Wall clock time and date at job start Tue Mar 31 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47246 * 2 1 4 4 C 1.46500 * 120.00024 * 275.96223 * 3 2 1 5 5 C 1.50700 * 109.46686 * 275.26165 * 4 3 2 6 6 H 1.08000 * 120.00252 * 4.82659 * 5 4 3 7 7 C 1.37880 * 120.00112 * 184.83005 * 5 4 3 8 8 N 1.31516 * 120.00369 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46981 * 90.00447 * 9 7 5 11 11 H 1.48504 * 109.47442 * 210.00236 * 9 7 5 12 12 H 1.48504 * 109.47498 * 330.00570 * 9 7 5 13 13 C 1.34773 * 120.00025 * 95.95601 * 3 2 1 14 14 O 1.21279 * 119.99807 * 3.29683 * 13 3 2 15 15 C 1.50701 * 119.99999 * 183.29697 * 13 3 2 16 16 H 1.08998 * 109.71279 * 33.38139 * 15 13 3 17 17 C 1.53373 * 109.71591 * 154.02913 * 15 13 3 18 18 C 1.53028 * 109.74776 * 170.32405 * 17 15 13 19 19 H 1.09003 * 109.42682 * 48.34850 * 18 17 15 20 20 C 1.52999 * 109.43000 * 168.19251 * 18 17 15 21 21 C 1.53389 * 109.72067 * 288.27272 * 18 17 15 22 22 C 1.50877 * 108.19256 * 50.53567 * 21 18 17 23 23 C 1.34575 * 128.32448 * 163.44180 * 22 21 18 24 24 N 1.35194 * 107.61908 * 180.13235 * 23 22 21 25 25 H 0.97003 * 126.00754 * 179.97438 * 24 23 22 26 26 N 1.40317 * 107.99368 * 359.96275 * 24 23 22 27 27 C 1.30132 * 108.12079 * 359.95727 * 26 24 23 28 28 H 1.09007 * 109.47001 * 62.73657 * 1 2 3 29 29 H 1.08999 * 109.47250 * 182.73512 * 1 2 3 30 30 H 1.08997 * 109.47557 * 302.74019 * 1 2 3 31 31 H 1.09002 * 109.47033 * 239.99838 * 2 1 3 32 32 H 1.08999 * 109.47293 * 119.99587 * 2 1 3 33 33 H 1.08998 * 109.47305 * 35.25535 * 4 3 2 34 34 H 1.08996 * 109.47364 * 155.26264 * 4 3 2 35 35 H 0.97001 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.42262 * 290.40765 * 17 15 13 37 37 H 1.09004 * 109.42534 * 50.24058 * 17 15 13 38 38 H 1.09002 * 109.46921 * 180.25679 * 20 18 17 39 39 H 1.09001 * 109.46938 * 300.25528 * 20 18 17 40 40 H 1.08994 * 109.46903 * 60.25216 * 20 18 17 41 41 H 1.09003 * 109.71401 * 290.86540 * 21 18 17 42 42 H 1.08997 * 109.71716 * 170.21097 * 21 18 17 43 43 H 1.08002 * 126.19412 * 0.09269 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1383 2.1158 -1.2619 5 6 3.4621 1.7943 -1.9062 6 1 4.1118 1.0531 -1.4648 7 6 3.8441 2.4467 -3.0593 8 7 4.9991 2.1659 -3.6220 9 14 2.7202 3.7284 -3.8232 10 1 3.0374 5.0647 -3.2582 11 1 2.9238 3.7519 -5.2940 12 1 1.3059 3.3878 -3.5246 13 6 2.3572 1.9762 1.1609 14 8 2.3148 1.3495 2.1984 15 6 2.7886 3.4201 1.1697 16 1 2.2505 3.9694 0.3972 17 6 2.4984 4.0384 2.5429 18 6 3.1486 5.4206 2.6355 19 1 2.9042 5.9967 1.7431 20 6 2.6195 6.1502 3.8718 21 6 4.6712 5.2700 2.7445 22 6 5.1342 4.3527 1.6397 23 6 6.3820 4.1801 1.1663 24 7 6.3206 3.2618 0.1760 25 1 7.0693 2.9384 -0.3491 26 7 4.9834 2.8585 0.0412 27 6 4.2741 3.5093 0.9169 28 1 -0.3633 0.4708 -0.9136 29 1 -0.3634 -1.0265 0.0490 30 1 -0.3634 0.5558 0.8643 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3285 1.8240 -1.9305 34 1 2.0799 3.1864 -1.0660 35 1 5.2677 2.6246 -4.4334 36 1 1.4209 4.1350 2.6766 37 1 2.9034 3.3943 3.3235 38 1 3.0788 7.1367 3.9358 39 1 1.5375 6.2576 3.7949 40 1 2.8651 5.5763 4.7652 41 1 4.9298 4.8400 3.7122 42 1 5.1459 6.2452 2.6360 43 1 7.2715 4.6844 1.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598935188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:37 Heat of formation + Delta-G solvation = 13.068133 kcal Electronic energy + Delta-G solvation = -24931.459545 eV Core-core repulsion = 21591.163012 eV Total energy + Delta-G solvation = -3340.296533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36809 -40.70613 -37.91931 -36.90195 -34.54419 -33.77391 -31.93668 -31.61341 -30.54189 -29.35869 -26.81588 -25.77937 -24.47992 -23.72756 -22.12471 -21.47795 -20.04357 -19.40530 -18.88065 -18.41193 -17.89308 -17.13854 -16.49971 -16.06209 -15.64807 -15.22818 -15.04604 -14.95546 -14.63252 -14.44098 -14.29022 -13.92917 -13.77173 -13.54041 -13.31275 -13.15732 -13.07821 -12.83009 -12.58304 -12.53952 -12.24805 -12.10455 -11.97005 -11.80180 -11.60942 -11.46142 -11.40078 -11.03881 -10.68753 -10.53562 -10.06320 -9.39693 -9.13421 -8.10574 -6.04970 1.27726 1.35573 1.38562 1.44535 1.62174 1.97625 2.26057 2.36484 2.41626 3.23455 3.52961 3.75870 3.87459 4.02122 4.12924 4.23684 4.32938 4.38439 4.40788 4.50292 4.54207 4.70998 4.76230 4.83746 4.87887 4.90493 4.96029 4.98597 5.02576 5.05580 5.12913 5.20815 5.30414 5.33410 5.38529 5.53086 5.58828 5.64553 5.76780 5.90106 6.34868 6.66976 6.68893 6.95161 7.03668 7.29576 7.50733 9.06084 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.008019 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.425662 B = 3490.766208 C = 4563.456400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.106 3.894 3 N -0.589 5.589 4 C 0.215 3.785 5 C -0.473 4.473 6 H 0.038 0.962 7 C 0.029 3.971 8 N -0.938 5.938 9 Si 0.913 3.087 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.243 1.243 13 C 0.524 3.476 14 O -0.590 6.590 15 C -0.023 4.023 16 H 0.101 0.899 17 C -0.086 4.086 18 C -0.086 4.086 19 H 0.068 0.932 20 C -0.137 4.137 21 C -0.025 4.025 22 C -0.253 4.253 23 C 0.053 3.947 24 N -0.491 5.491 25 H 0.440 0.560 26 N -0.246 5.246 27 C 0.046 3.954 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 8.726 11.465 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.318 5.318 4 C 0.093 3.907 5 C -0.512 4.512 6 H 0.057 0.943 7 C -0.168 4.168 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.166 1.166 13 C 0.313 3.687 14 O -0.473 6.473 15 C -0.046 4.046 16 H 0.119 0.881 17 C -0.124 4.124 18 C -0.105 4.105 19 H 0.086 0.914 20 C -0.195 4.195 21 C -0.063 4.063 22 C -0.265 4.265 23 C -0.092 4.092 24 N -0.199 5.199 25 H 0.283 0.717 26 N -0.067 5.067 27 C -0.124 4.124 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.436 7.566 10.891 13.699 hybrid contribution 0.592 0.522 -0.878 1.181 sum -2.844 8.088 10.013 13.182 Atomic orbital electron populations 1.22004 0.93767 1.03181 1.01801 1.21404 0.95675 0.82571 1.01995 1.47980 1.62436 1.14245 1.07155 1.19686 0.96902 0.92259 0.81840 1.21110 1.01370 1.21547 1.07207 0.94336 1.25331 0.95889 0.98256 0.97329 1.70025 1.22702 1.44435 1.20857 0.86250 0.81574 0.80564 0.77779 1.20331 1.21610 1.16587 1.20581 0.75651 0.89630 0.82882 1.90545 1.56714 1.66897 1.33120 1.19880 0.90050 0.93083 1.01571 0.88109 1.21497 1.01417 0.96737 0.92775 1.21151 0.94907 0.94434 1.00010 0.91355 1.21760 1.01204 1.00338 0.96158 1.20064 0.94603 0.97259 0.94411 1.20443 0.92200 1.07438 1.06408 1.22651 1.00215 0.94706 0.91643 1.46778 1.08304 1.34565 1.30252 0.71675 1.78146 0.87802 1.21293 1.19450 1.22028 0.95663 0.98524 0.96154 0.92193 0.89524 0.93204 0.91186 0.91763 0.94290 0.94741 0.93467 0.90227 0.91897 0.90986 0.92110 0.92306 0.90770 0.89219 0.76999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 10.23 71.98 0.74 -3.72 16 2 C 0.11 4.07 6.24 86.38 0.54 4.61 16 3 N -0.59 -25.51 2.46 -826.17 -2.03 -27.54 16 4 C 0.21 9.81 4.18 85.63 0.36 10.17 16 5 C -0.47 -25.65 7.29 25.60 0.19 -25.46 16 6 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 7 C 0.03 1.61 5.47 84.66 0.46 2.07 16 8 N -0.94 -55.89 13.96 21.45 0.30 -55.59 16 9 Si 0.91 42.00 27.38 68.60 1.88 43.87 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.24 -10.10 6.68 99.48 0.66 -9.44 16 13 C 0.52 22.80 6.70 87.66 0.59 23.39 16 14 O -0.59 -27.77 15.40 -3.03 -0.05 -27.82 16 15 C -0.02 -0.88 2.16 -12.08 -0.03 -0.90 16 16 H 0.10 3.79 6.07 -2.39 -0.01 3.77 16 17 C -0.09 -2.58 4.22 30.73 0.13 -2.45 16 18 C -0.09 -2.03 2.66 -10.65 -0.03 -2.06 16 19 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 20 C -0.14 -2.34 9.15 71.98 0.66 -1.68 16 21 C -0.03 -0.60 5.57 30.03 0.17 -0.43 16 22 C -0.25 -8.21 5.89 -20.10 -0.12 -8.33 16 23 C 0.05 1.56 11.95 83.34 1.00 2.56 16 24 N -0.49 -18.47 7.37 -57.88 -0.43 -18.90 16 25 H 0.44 15.11 8.96 -213.18 -1.91 13.20 16 26 N -0.25 -11.46 9.50 -47.14 -0.45 -11.91 16 27 C 0.05 1.88 6.40 43.44 0.28 2.16 16 28 H 0.06 1.73 8.12 -2.38 -0.02 1.71 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 2.75 8.12 -2.39 -0.02 2.73 16 32 H 0.06 2.57 7.21 -2.39 -0.02 2.55 16 33 H 0.04 1.71 7.48 -2.39 -0.02 1.69 16 34 H 0.03 1.55 4.77 -2.39 -0.01 1.54 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 37 H 0.06 2.10 7.48 -2.38 -0.02 2.08 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 42 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.21 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -72.45 340.56 3.21 -69.24 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.94 Total: 28.72 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 4.93 Total: -0.08 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -2.61 Total: -113.94 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.87 kcal Total: -72.45 3.21 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598935188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.307 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds