Wall clock time and date at job start Tue Mar 31 2020 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47207 * 2 1 4 4 C 1.46501 * 119.99715 * 268.03413 * 3 2 1 5 5 C 1.50702 * 109.46962 * 261.59625 * 4 3 2 6 6 H 1.08000 * 119.99956 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99823 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00389 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99787 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47157 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47418 * 119.99977 * 9 7 5 12 12 H 1.48501 * 109.47321 * 240.00035 * 9 7 5 13 13 C 1.34771 * 120.00069 * 88.02790 * 3 2 1 14 14 O 1.21281 * 120.00223 * 4.19752 * 13 3 2 15 15 C 1.50707 * 119.99848 * 184.19532 * 13 3 2 16 16 H 1.08999 * 109.74996 * 311.48038 * 15 13 3 17 17 C 1.53162 * 110.17385 * 191.22911 * 15 13 3 18 18 C 1.53030 * 109.95317 * 189.72632 * 17 15 13 19 19 H 1.08998 * 109.38875 * 311.47002 * 18 17 15 20 20 C 1.53004 * 109.42721 * 191.59549 * 18 17 15 21 21 C 1.53386 * 109.71542 * 71.52459 * 18 17 15 22 22 C 1.50887 * 108.19516 * 309.46919 * 21 18 17 23 23 C 1.34570 * 128.32607 * 196.62512 * 22 21 18 24 24 N 1.35199 * 107.61610 * 179.48767 * 23 22 21 25 25 H 0.96995 * 125.99985 * 180.27072 * 24 23 22 26 26 N 1.40314 * 107.99316 * 0.30069 * 24 23 22 27 27 C 1.30125 * 108.12311 * 0.03995 * 26 24 23 28 28 H 1.08994 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46951 * 300.00059 * 1 2 3 30 30 H 1.08998 * 109.47414 * 59.99709 * 1 2 3 31 31 H 1.08993 * 109.47150 * 240.00199 * 2 1 3 32 32 H 1.09000 * 109.47334 * 119.99518 * 2 1 3 33 33 H 1.09004 * 109.47250 * 21.59608 * 4 3 2 34 34 H 1.08999 * 109.47142 * 141.59928 * 4 3 2 35 35 H 0.97005 * 120.00025 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.49836 * 69.46205 * 17 15 13 37 37 H 1.09000 * 109.13777 * 309.75873 * 17 15 13 38 38 H 1.08997 * 109.47321 * 299.75141 * 20 18 17 39 39 H 1.09001 * 109.46880 * 59.75532 * 20 18 17 40 40 H 1.09006 * 109.46702 * 179.74622 * 20 18 17 41 41 H 1.09006 * 109.71862 * 189.79718 * 21 18 17 42 42 H 1.08999 * 109.72101 * 69.14823 * 21 18 17 43 43 H 1.07995 * 126.19234 * 359.75733 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3036 2.0573 -1.2680 5 6 3.7823 1.9916 -1.5508 6 1 4.4435 1.4954 -0.8557 7 6 4.2910 2.5639 -2.6974 8 7 3.4857 3.1667 -3.5445 9 14 6.1240 2.4817 -3.0482 10 1 6.8062 1.7528 -1.9489 11 1 6.3511 1.7679 -4.3305 12 1 6.6717 3.8586 -3.1446 13 6 2.2051 2.0300 1.1664 14 8 2.0422 1.4470 2.2174 15 6 2.6165 3.4798 1.1649 16 1 3.4547 3.6241 0.4832 17 6 3.0334 3.9121 2.5738 18 6 3.2168 5.4307 2.6213 19 1 3.8336 5.7471 1.7801 20 6 3.9046 5.8195 3.9315 21 6 1.8490 6.1199 2.5389 22 6 1.1007 5.5428 1.3626 23 6 0.0201 6.0419 0.7348 24 7 -0.2983 5.1935 -0.2685 25 1 -1.0328 5.2993 -0.8931 26 7 0.6200 4.1328 -0.2471 27 6 1.4535 4.3387 0.7307 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7575 1.5653 -2.0730 34 1 1.9923 3.0998 -1.2020 35 1 3.8437 3.5696 -4.3510 36 1 3.9711 3.4251 2.8412 37 1 2.2584 3.6183 3.2817 38 1 3.2876 5.5049 4.7731 39 1 4.8768 5.3300 3.9907 40 1 4.0397 6.9006 3.9640 41 1 1.9854 7.1922 2.3978 42 1 1.2894 5.9374 3.4563 43 1 -0.4964 6.9569 0.9843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598935194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:47 Heat of formation + Delta-G solvation = 23.513130 kcal Electronic energy + Delta-G solvation = -24776.293757 eV Core-core repulsion = 21436.450154 eV Total energy + Delta-G solvation = -3339.843604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21874 -38.95789 -36.70760 -34.99233 -32.86717 -32.34040 -30.64920 -30.10185 -29.28163 -26.84664 -25.89025 -24.41153 -22.88606 -22.26249 -20.93347 -20.42728 -18.73198 -17.77418 -17.36004 -16.58696 -15.83442 -15.38614 -15.18695 -14.39885 -14.15309 -14.04320 -13.91561 -13.63970 -13.13066 -12.93847 -12.59726 -12.55086 -12.21212 -12.10046 -11.76730 -11.68541 -11.47821 -11.28147 -11.12371 -10.87711 -10.86447 -10.71612 -10.40074 -10.36567 -10.27500 -10.02552 -9.82017 -9.53658 -9.20023 -8.66147 -8.44735 -8.05375 -7.50353 -6.07602 -4.14364 2.29385 3.07782 3.20730 3.25957 3.34127 3.38580 3.59677 4.11016 4.40867 4.77156 5.03561 5.11091 5.14239 5.24581 5.39919 5.49766 5.63450 5.75540 5.76854 5.87402 5.89205 5.91770 5.95978 6.00398 6.06545 6.14734 6.23481 6.26886 6.34539 6.42564 6.49236 6.53476 6.60566 6.74889 6.80997 6.99275 7.00621 7.52763 7.66975 7.80551 7.88861 8.13451 8.23175 8.49828 8.93278 9.16995 9.52002 10.98148 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.006943 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.776513 B = 4032.016710 C = 4566.295061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.585 5.585 4 C 0.228 3.772 5 C -0.539 4.539 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.530 3.470 14 O -0.577 6.577 15 C -0.028 4.028 16 H 0.127 0.873 17 C -0.091 4.091 18 C -0.092 4.092 19 H 0.075 0.925 20 C -0.143 4.143 21 C -0.031 4.031 22 C -0.234 4.234 23 C 0.050 3.950 24 N -0.489 5.489 25 H 0.435 0.565 26 N -0.250 5.250 27 C 0.100 3.900 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 6.738 9.071 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 N -0.314 5.314 4 C 0.107 3.893 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.318 3.682 14 O -0.459 6.459 15 C -0.051 4.051 16 H 0.145 0.855 17 C -0.129 4.129 18 C -0.111 4.111 19 H 0.093 0.907 20 C -0.201 4.201 21 C -0.069 4.069 22 C -0.246 4.246 23 C -0.095 4.095 24 N -0.197 5.197 25 H 0.278 0.722 26 N -0.072 5.072 27 C -0.070 4.070 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.875 5.762 8.443 11.789 hybrid contribution 0.763 0.664 -0.426 1.098 sum -5.112 6.426 8.016 11.476 Atomic orbital electron populations 1.22078 0.97019 1.00781 1.01932 1.21227 0.93347 0.84189 1.02155 1.48142 1.62263 1.12870 1.08107 1.19767 0.95427 0.95154 0.78908 1.21652 0.93156 1.36463 1.06499 0.92248 1.24920 0.97921 0.95061 0.95865 1.69965 1.34618 1.36474 1.11534 0.86550 0.85422 0.77847 0.78336 1.19600 1.20954 1.20886 1.20002 0.76676 0.88101 0.83469 1.90559 1.54576 1.69029 1.31733 1.19874 0.95404 0.90594 0.99209 0.85497 1.21404 1.02277 0.94425 0.94820 1.21182 0.96180 0.95300 0.98409 0.90694 1.21804 1.00431 1.00800 0.97043 1.20004 0.94191 0.98345 0.94392 1.20031 1.01134 0.98920 1.04517 1.21907 0.98422 0.97223 0.91998 1.46510 1.27200 1.18731 1.27212 0.72178 1.77404 1.02482 1.07513 1.19768 1.21800 0.96384 0.95248 0.93531 0.92714 0.93071 0.92603 0.90752 0.91285 0.95191 0.91170 0.92860 0.90990 0.90832 0.92717 0.92563 0.92881 0.91604 0.91564 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.23 37.16 0.38 -2.43 16 2 C 0.11 2.29 6.10 -4.04 -0.02 2.26 16 3 N -0.58 -13.29 2.49 -175.05 -0.44 -13.73 16 4 C 0.23 5.73 4.57 -5.19 -0.02 5.71 16 5 C -0.54 -14.53 8.38 -34.44 -0.29 -14.82 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.53 11.94 6.77 -10.98 -0.07 11.87 16 14 O -0.58 -13.72 15.42 5.56 0.09 -13.63 16 15 C -0.03 -0.56 2.04 -92.71 -0.19 -0.75 16 16 H 0.13 2.80 6.86 -51.93 -0.36 2.44 16 17 C -0.09 -1.51 4.07 -26.63 -0.11 -1.62 16 18 C -0.09 -1.25 2.67 -90.40 -0.24 -1.49 16 19 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 20 C -0.14 -1.56 9.15 37.16 0.34 -1.22 16 21 C -0.03 -0.40 5.57 -27.59 -0.15 -0.55 16 22 C -0.23 -3.69 5.89 -104.98 -0.62 -4.31 16 23 C 0.05 0.67 11.95 -17.37 -0.21 0.46 16 24 N -0.49 -7.44 7.37 30.35 0.22 -7.22 16 25 H 0.44 5.12 8.96 -182.44 -1.64 3.49 16 26 N -0.25 -5.04 9.90 33.75 0.33 -4.71 16 27 C 0.10 1.94 5.92 -82.34 -0.49 1.45 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.44 8.06 -51.93 -0.42 1.03 16 32 H 0.07 1.37 7.43 -51.93 -0.39 0.99 16 33 H 0.03 0.81 8.01 -51.93 -0.42 0.39 16 34 H 0.07 1.82 4.12 -51.93 -0.21 1.61 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 37 H 0.07 1.28 7.60 -51.93 -0.39 0.89 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 43 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -32.30 344.63 -8.69 -40.99 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.01 Total: 5.38 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.79 Total: -3.78 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.86 Total: -50.13 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.30 -8.69 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598935194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.505 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds