Wall clock time and date at job start Tue Mar 31 2020 06:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47207 * 2 1 4 4 C 1.46501 * 119.99715 * 268.03413 * 3 2 1 5 5 C 1.50702 * 109.46962 * 261.59625 * 4 3 2 6 6 H 1.08000 * 119.99956 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99823 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00389 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99787 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47157 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47418 * 119.99977 * 9 7 5 12 12 H 1.48501 * 109.47321 * 240.00035 * 9 7 5 13 13 C 1.34771 * 120.00069 * 88.02790 * 3 2 1 14 14 O 1.21281 * 120.00223 * 4.19752 * 13 3 2 15 15 C 1.50707 * 119.99848 * 184.19532 * 13 3 2 16 16 H 1.08999 * 109.74996 * 311.48038 * 15 13 3 17 17 C 1.53162 * 110.17385 * 191.22911 * 15 13 3 18 18 C 1.53030 * 109.95317 * 189.72632 * 17 15 13 19 19 H 1.08998 * 109.38875 * 311.47002 * 18 17 15 20 20 C 1.53004 * 109.42721 * 191.59549 * 18 17 15 21 21 C 1.53386 * 109.71542 * 71.52459 * 18 17 15 22 22 C 1.50887 * 108.19516 * 309.46919 * 21 18 17 23 23 C 1.34570 * 128.32607 * 196.62512 * 22 21 18 24 24 N 1.35199 * 107.61610 * 179.48767 * 23 22 21 25 25 H 0.96995 * 125.99985 * 180.27072 * 24 23 22 26 26 N 1.40314 * 107.99316 * 0.30069 * 24 23 22 27 27 C 1.30125 * 108.12311 * 0.03995 * 26 24 23 28 28 H 1.08994 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46951 * 300.00059 * 1 2 3 30 30 H 1.08998 * 109.47414 * 59.99709 * 1 2 3 31 31 H 1.08993 * 109.47150 * 240.00199 * 2 1 3 32 32 H 1.09000 * 109.47334 * 119.99518 * 2 1 3 33 33 H 1.09004 * 109.47250 * 21.59608 * 4 3 2 34 34 H 1.08999 * 109.47142 * 141.59928 * 4 3 2 35 35 H 0.97005 * 120.00025 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.49836 * 69.46205 * 17 15 13 37 37 H 1.09000 * 109.13777 * 309.75873 * 17 15 13 38 38 H 1.08997 * 109.47321 * 299.75141 * 20 18 17 39 39 H 1.09001 * 109.46880 * 59.75532 * 20 18 17 40 40 H 1.09006 * 109.46702 * 179.74622 * 20 18 17 41 41 H 1.09006 * 109.71862 * 189.79718 * 21 18 17 42 42 H 1.08999 * 109.72101 * 69.14823 * 21 18 17 43 43 H 1.07995 * 126.19234 * 359.75733 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3036 2.0573 -1.2680 5 6 3.7823 1.9916 -1.5508 6 1 4.4435 1.4954 -0.8557 7 6 4.2910 2.5639 -2.6974 8 7 3.4857 3.1667 -3.5445 9 14 6.1240 2.4817 -3.0482 10 1 6.8062 1.7528 -1.9489 11 1 6.3511 1.7679 -4.3305 12 1 6.6717 3.8586 -3.1446 13 6 2.2051 2.0300 1.1664 14 8 2.0422 1.4470 2.2174 15 6 2.6165 3.4798 1.1649 16 1 3.4547 3.6241 0.4832 17 6 3.0334 3.9121 2.5738 18 6 3.2168 5.4307 2.6213 19 1 3.8336 5.7471 1.7801 20 6 3.9046 5.8195 3.9315 21 6 1.8490 6.1199 2.5389 22 6 1.1007 5.5428 1.3626 23 6 0.0201 6.0419 0.7348 24 7 -0.2983 5.1935 -0.2685 25 1 -1.0328 5.2993 -0.8931 26 7 0.6200 4.1328 -0.2471 27 6 1.4535 4.3387 0.7307 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7575 1.5653 -2.0730 34 1 1.9923 3.0998 -1.2020 35 1 3.8437 3.5696 -4.3510 36 1 3.9711 3.4251 2.8412 37 1 2.2584 3.6183 3.2817 38 1 3.2876 5.5049 4.7731 39 1 4.8768 5.3300 3.9907 40 1 4.0397 6.9006 3.9640 41 1 1.9854 7.1922 2.3978 42 1 1.2894 5.9374 3.4563 43 1 -0.4964 6.9569 0.9843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598935194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:46 Heat of formation + Delta-G solvation = 3.697858 kcal Electronic energy + Delta-G solvation = -24777.153012 eV Core-core repulsion = 21436.450154 eV Total energy + Delta-G solvation = -3340.702858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.50860 -40.65546 -37.94690 -36.82172 -34.76778 -33.85659 -31.88805 -31.62712 -30.61601 -28.85512 -26.89590 -25.83085 -24.90531 -23.76260 -22.28234 -21.56666 -20.09996 -19.40924 -18.61582 -18.58339 -17.60663 -17.13317 -16.55096 -16.29370 -15.67837 -15.36048 -15.11843 -14.99138 -14.48648 -14.35963 -14.26989 -13.90293 -13.77471 -13.46744 -13.20765 -13.13942 -13.07550 -12.84038 -12.71167 -12.56533 -12.36331 -12.22584 -11.98156 -11.82246 -11.68717 -11.45065 -11.43036 -11.22688 -10.72709 -10.53056 -10.18931 -9.39340 -9.21444 -8.17881 -6.32803 1.09122 1.37623 1.39679 1.51324 1.65683 1.88329 2.13707 2.34618 2.49626 3.10700 3.54080 3.74779 3.83473 4.03704 4.10701 4.24835 4.35033 4.37105 4.48601 4.49669 4.57081 4.71008 4.77820 4.79888 4.88761 4.94377 4.97303 5.03424 5.04900 5.10006 5.18736 5.21954 5.32930 5.35602 5.45519 5.50239 5.63983 5.71729 5.82471 5.92532 6.12329 6.57053 6.62154 6.81429 6.91013 7.30506 7.42617 8.86997 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.006943 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.776513 B = 4032.016710 C = 4566.295061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.245 3.755 5 C -0.550 4.550 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.275 1.275 13 C 0.524 3.476 14 O -0.595 6.595 15 C -0.027 4.027 16 H 0.098 0.902 17 C -0.083 4.083 18 C -0.089 4.089 19 H 0.062 0.938 20 C -0.137 4.137 21 C -0.025 4.025 22 C -0.255 4.255 23 C 0.075 3.925 24 N -0.482 5.482 25 H 0.448 0.552 26 N -0.307 5.307 27 C 0.073 3.927 28 H 0.089 0.911 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.004 0.996 34 H 0.067 0.933 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 8.641 10.086 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 N -0.319 5.319 4 C 0.124 3.876 5 C -0.589 4.589 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.200 1.200 13 C 0.312 3.688 14 O -0.478 6.478 15 C -0.050 4.050 16 H 0.115 0.885 17 C -0.122 4.122 18 C -0.107 4.107 19 H 0.080 0.920 20 C -0.194 4.194 21 C -0.063 4.063 22 C -0.266 4.266 23 C -0.071 4.071 24 N -0.191 5.191 25 H 0.294 0.706 26 N -0.130 5.130 27 C -0.095 4.095 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.022 0.978 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.079 7.651 9.458 13.599 hybrid contribution 0.735 0.052 -0.768 1.064 sum -5.344 7.703 8.690 12.783 Atomic orbital electron populations 1.21944 0.94949 1.02711 1.00725 1.21431 0.95097 0.83027 1.02177 1.48181 1.62442 1.13792 1.07508 1.19398 0.94188 0.94920 0.79068 1.21799 0.93919 1.36545 1.06598 0.93314 1.25659 1.02218 0.94524 0.95525 1.70066 1.36497 1.37069 1.11962 0.85551 0.80145 0.78131 0.78161 1.19408 1.20283 1.20030 1.20495 0.76132 0.89171 0.82993 1.90524 1.55570 1.69721 1.32025 1.19820 0.95137 0.89406 1.00639 0.88451 1.21398 1.01448 0.97061 0.92280 1.21168 0.97273 0.92741 0.99564 0.91991 1.21759 1.00052 1.02190 0.95444 1.20078 0.92992 0.99539 0.93723 1.20478 1.02383 0.97954 1.05813 1.22711 0.97111 0.97632 0.89689 1.46521 1.26730 1.17965 1.27926 0.70625 1.77231 1.04321 1.10296 1.21166 1.21861 0.96338 0.96783 0.94512 0.89181 0.94438 0.93456 0.90588 0.91276 0.97786 0.91531 0.92569 0.91500 0.91664 0.91935 0.92796 0.90677 0.88747 0.90183 0.75881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 10.23 71.98 0.74 -4.42 16 2 C 0.11 4.35 6.10 86.38 0.53 4.88 16 3 N -0.59 -28.08 2.49 -826.14 -2.05 -30.13 16 4 C 0.25 12.97 4.57 85.63 0.39 13.36 16 5 C -0.55 -30.73 8.38 25.60 0.21 -30.52 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 7 C 0.02 1.16 5.46 84.65 0.46 1.62 16 8 N -0.92 -53.08 13.29 21.44 0.28 -52.80 16 9 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 C 0.52 24.61 6.77 87.66 0.59 25.20 16 14 O -0.60 -29.22 15.42 -3.03 -0.05 -29.27 16 15 C -0.03 -1.14 2.04 -12.15 -0.02 -1.16 16 16 H 0.10 4.59 6.86 -2.39 -0.02 4.57 16 17 C -0.08 -2.83 4.07 30.66 0.12 -2.70 16 18 C -0.09 -2.31 2.67 -10.65 -0.03 -2.33 16 19 H 0.06 1.76 8.11 -2.39 -0.02 1.74 16 20 C -0.14 -2.66 9.15 71.98 0.66 -2.00 16 21 C -0.03 -0.57 5.57 30.04 0.17 -0.41 16 22 C -0.25 -7.59 5.89 -20.10 -0.12 -7.71 16 23 C 0.07 1.77 11.95 83.33 1.00 2.77 16 24 N -0.48 -14.11 7.37 -57.89 -0.43 -14.53 16 25 H 0.45 9.98 8.96 -213.19 -1.91 8.07 16 26 N -0.31 -12.64 9.90 -47.13 -0.47 -13.11 16 27 C 0.07 2.88 5.92 43.44 0.26 3.14 16 28 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 3.05 8.06 -2.39 -0.02 3.03 16 32 H 0.07 2.82 7.43 -2.39 -0.02 2.81 16 33 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 34 H 0.07 3.64 4.12 -2.39 -0.01 3.63 16 35 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 36 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 37 H 0.06 2.29 7.60 -2.39 -0.02 2.28 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.08 1.61 8.13 -2.39 -0.02 1.59 16 43 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -72.63 344.63 3.37 -69.25 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.90 Total: 25.29 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 4.96 Total: -0.29 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -2.66 Total: -110.57 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.63 3.37 -69.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598935194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.950 kcal (2) G-P(sol) polarization free energy of solvation -72.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds