Wall clock time and date at job start Tue Mar 31 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46996 * 2 1 4 4 C 1.34262 * 125.75078 * 125.26673 * 3 2 1 5 5 C 1.38047 * 107.41527 * 180.15098 * 4 3 2 6 6 C 1.47425 * 126.41653 * 179.87312 * 5 4 3 7 7 O 1.21602 * 120.00397 * 188.10391 * 6 5 4 8 8 N 1.34781 * 119.99609 * 8.10742 * 6 5 4 9 9 C 1.46501 * 119.99647 * 186.00746 * 8 6 5 10 10 C 1.50695 * 109.47363 * 270.27263 * 9 8 6 11 11 H 1.08000 * 119.99790 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00617 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99587 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00477 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47185 * 60.00184 * 14 12 10 16 16 H 1.48501 * 109.47371 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47164 * 300.00039 * 14 12 10 18 18 C 1.46494 * 120.00219 * 6.28275 * 8 6 5 19 19 C 1.53000 * 109.46936 * 271.20227 * 18 8 6 20 20 C 1.53000 * 117.50175 * 243.74789 * 19 18 8 21 21 C 1.53003 * 117.50047 * 175.08462 * 19 18 8 22 22 C 1.41289 * 107.17139 * 359.60227 * 5 4 3 23 23 C 1.50693 * 125.99256 * 180.27842 * 22 5 4 24 24 N 1.30452 * 108.02366 * 0.24623 * 22 5 4 25 25 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47155 * 299.99764 * 1 2 3 27 27 H 1.09001 * 109.46781 * 60.00059 * 1 2 3 28 28 H 1.09000 * 109.47478 * 240.00336 * 2 1 3 29 29 H 1.09000 * 109.47267 * 120.00142 * 2 1 3 30 30 H 1.08000 * 126.29488 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47058 * 30.27779 * 9 8 6 32 32 H 1.09004 * 109.47205 * 150.27171 * 9 8 6 33 33 H 0.97003 * 120.00209 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47448 * 31.20316 * 18 8 6 35 35 H 1.08998 * 109.47376 * 151.20600 * 18 8 6 36 36 H 1.09004 * 115.55489 * 29.42177 * 19 18 8 37 37 H 1.09003 * 117.50030 * 359.97438 * 20 19 18 38 38 H 1.08995 * 117.50259 * 145.02209 * 20 19 18 39 39 H 1.08999 * 117.50166 * 214.98151 * 21 19 18 40 40 H 1.09005 * 117.49334 * 0.02562 * 21 19 18 41 41 H 1.09002 * 109.47427 * 89.99950 * 23 22 5 42 42 H 1.08996 * 109.47379 * 210.00427 * 23 22 5 43 43 H 1.09000 * 109.46963 * 330.00289 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8729 1.9111 0.8897 5 6 3.0706 3.2311 0.5371 6 6 3.9321 4.2035 1.2340 7 8 3.9091 5.3761 0.9127 8 7 4.7452 3.7928 2.2273 9 6 5.5024 4.7749 3.0074 10 6 6.8360 5.0188 2.3493 11 1 7.0936 4.4950 1.4407 12 6 7.7268 5.9114 2.9066 13 7 7.4129 6.5497 4.0128 14 14 9.3796 6.2143 2.0905 15 1 9.1651 6.7327 0.7156 16 1 10.1471 7.2097 2.8813 17 1 10.1407 4.9407 2.0263 18 6 4.8766 2.3641 2.5230 19 6 3.8082 1.9531 3.5381 20 6 4.2854 1.4581 4.9049 21 6 3.7041 0.4682 3.8923 22 6 2.2977 3.4740 -0.6204 23 6 2.2067 4.7800 -1.3666 24 7 1.6771 2.3692 -0.9305 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3210 1.3996 1.7287 31 1 4.9441 5.7099 3.0545 32 1 5.6595 4.3943 4.0166 33 1 8.0398 7.1775 4.4052 34 1 4.7464 1.7897 1.6058 35 1 5.8656 2.1681 2.9371 36 1 2.8831 2.5288 3.5064 37 1 5.3607 1.4248 5.0808 38 1 3.6744 1.7079 5.7722 39 1 2.7107 0.0673 4.0938 40 1 4.3971 -0.2157 3.4023 41 1 2.9785 4.8138 -2.1356 42 1 1.2252 4.8644 -1.8330 43 1 2.3506 5.6067 -0.6709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599326215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:41 Heat of formation + Delta-G solvation = 81.830884 kcal Electronic energy + Delta-G solvation = -24008.994602 eV Core-core repulsion = 20671.679846 eV Total energy + Delta-G solvation = -3337.314756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31523 -38.74880 -37.31008 -34.79399 -34.28240 -32.60375 -31.28642 -30.05922 -27.77411 -27.45554 -26.21828 -23.70062 -22.79463 -22.52005 -21.27090 -20.89872 -19.64363 -18.49884 -16.91551 -16.42251 -16.02317 -15.60563 -15.16322 -14.95035 -14.62438 -14.29844 -14.14289 -13.92684 -13.35012 -13.02440 -12.75528 -12.61471 -12.39912 -12.24381 -12.02556 -11.90442 -11.57402 -11.56767 -11.46475 -11.33018 -11.16309 -10.85234 -10.64335 -10.43465 -10.35595 -10.10850 -9.87645 -9.58245 -9.10175 -8.80112 -8.37248 -8.32044 -7.59087 -5.98312 -4.02269 1.81569 2.47284 2.54237 3.35753 3.40152 3.44018 3.70148 4.04303 4.18810 4.33142 4.50728 4.71107 4.74065 4.84142 4.91496 4.96432 5.01449 5.06604 5.27929 5.35512 5.42503 5.48646 5.55735 5.57735 5.62854 5.79117 5.82488 5.85695 5.92366 5.99087 6.00616 6.16186 6.17153 6.35309 6.37973 6.84541 7.00343 7.18115 7.51324 7.63317 7.83836 7.99008 8.30539 8.52316 8.98091 9.24016 9.62636 11.09619 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.005115 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.725910 B = 5473.300037 C = 6626.247100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.367 5.367 4 C 0.067 3.933 5 C -0.277 4.277 6 C 0.581 3.419 7 O -0.537 6.537 8 N -0.591 5.591 9 C 0.251 3.749 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.128 3.872 19 C -0.180 4.180 20 C -0.164 4.164 21 C -0.191 4.191 22 C 0.127 3.873 23 C -0.077 4.077 24 N -0.311 5.311 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.208 0.792 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 -16.319 -3.266 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.147 5.147 4 C -0.082 4.082 5 C -0.292 4.292 6 C 0.369 3.631 7 O -0.415 6.415 8 N -0.321 5.321 9 C 0.132 3.868 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.204 1.204 18 C 0.004 3.996 19 C -0.200 4.200 20 C -0.201 4.201 21 C -0.229 4.229 22 C -0.040 4.040 23 C -0.136 4.136 24 N -0.133 5.133 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.224 0.776 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.241 -16.247 -4.099 20.751 hybrid contribution 1.540 0.335 0.339 1.612 sum -10.701 -15.913 -3.760 19.541 Atomic orbital electron populations 1.22043 0.93770 1.02680 1.03731 1.21705 0.96164 0.77578 1.03785 1.48488 1.34858 1.10140 1.21226 1.24681 0.92951 0.94683 0.95902 1.20616 1.10744 0.94643 1.03174 1.17216 0.79339 0.86961 0.79566 1.90701 1.68209 1.17970 1.64628 1.47986 1.43710 1.06362 1.34085 1.19250 0.90355 0.87238 0.89927 1.21417 1.00331 1.24449 1.09998 0.92539 1.24909 0.98591 0.95530 0.94988 1.69925 1.36347 1.27649 1.19603 0.86593 0.83501 0.77883 0.79632 1.20159 1.21255 1.20371 1.21444 0.97926 0.83578 0.96695 1.23082 1.02040 0.96086 0.98794 1.22996 1.01778 1.02423 0.92880 1.23063 1.02582 0.92063 1.05156 1.22442 0.93028 0.94839 0.93725 1.20337 1.01853 0.91408 0.99978 1.77008 1.25249 0.96901 1.14136 0.90801 0.92028 0.91037 0.89763 0.88566 0.77586 0.93975 0.94917 0.92767 0.90524 0.89540 0.87416 0.88159 0.88889 0.88894 0.88562 0.90557 0.91591 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.09 37.16 0.37 -0.89 16 2 C 0.13 1.08 7.21 -4.04 -0.03 1.05 16 3 N -0.37 -4.90 3.65 -60.80 -0.22 -5.12 16 4 C 0.07 0.96 8.67 -16.56 -0.14 0.82 16 5 C -0.28 -5.09 5.94 -105.07 -0.62 -5.71 16 6 C 0.58 12.95 7.64 -12.52 -0.10 12.85 16 7 O -0.54 -13.92 14.55 5.28 0.08 -13.84 16 8 N -0.59 -12.74 2.46 -176.33 -0.43 -13.17 16 9 C 0.25 6.57 5.10 -5.20 -0.03 6.55 16 10 C -0.52 -14.91 9.38 -34.44 -0.32 -15.23 16 11 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 14 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.13 2.08 5.15 -4.04 -0.02 2.06 16 19 C -0.18 -2.38 3.91 -90.62 -0.35 -2.73 16 20 C -0.16 -1.94 10.18 -26.69 -0.27 -2.22 16 21 C -0.19 -1.81 9.52 -26.69 -0.25 -2.06 16 22 C 0.13 2.23 7.26 -82.02 -0.60 1.63 16 23 C -0.08 -1.22 10.01 36.00 0.36 -0.86 16 24 N -0.31 -4.99 12.33 33.89 0.42 -4.57 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.55 8.06 -51.93 -0.42 0.13 16 30 H 0.21 2.50 2.59 -52.49 -0.14 2.36 16 31 H 0.04 1.25 7.52 -51.93 -0.39 0.86 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.08 1.11 4.98 -51.93 -0.26 0.85 16 35 H 0.09 1.44 7.79 -51.93 -0.40 1.03 16 36 H 0.11 1.56 7.91 -51.93 -0.41 1.15 16 37 H 0.10 1.23 8.03 -51.93 -0.42 0.82 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 1.77 6.42 -51.93 -0.33 1.44 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -34.47 353.43 -7.76 -42.22 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.54 Total: 1.13 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.10 Total: -3.07 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.50 Total: -48.78 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.47 -7.76 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599326215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.055 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds