Wall clock time and date at job start Tue Mar 31 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46996 * 2 1 4 4 C 1.34262 * 125.75078 * 125.26673 * 3 2 1 5 5 C 1.38047 * 107.41527 * 180.15098 * 4 3 2 6 6 C 1.47425 * 126.41653 * 179.87312 * 5 4 3 7 7 O 1.21602 * 120.00397 * 188.10391 * 6 5 4 8 8 N 1.34781 * 119.99609 * 8.10742 * 6 5 4 9 9 C 1.46501 * 119.99647 * 186.00746 * 8 6 5 10 10 C 1.50695 * 109.47363 * 270.27263 * 9 8 6 11 11 H 1.08000 * 119.99790 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00617 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99587 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00477 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47185 * 60.00184 * 14 12 10 16 16 H 1.48501 * 109.47371 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47164 * 300.00039 * 14 12 10 18 18 C 1.46494 * 120.00219 * 6.28275 * 8 6 5 19 19 C 1.53000 * 109.46936 * 271.20227 * 18 8 6 20 20 C 1.53000 * 117.50175 * 243.74789 * 19 18 8 21 21 C 1.53003 * 117.50047 * 175.08462 * 19 18 8 22 22 C 1.41289 * 107.17139 * 359.60227 * 5 4 3 23 23 C 1.50693 * 125.99256 * 180.27842 * 22 5 4 24 24 N 1.30452 * 108.02366 * 0.24623 * 22 5 4 25 25 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47155 * 299.99764 * 1 2 3 27 27 H 1.09001 * 109.46781 * 60.00059 * 1 2 3 28 28 H 1.09000 * 109.47478 * 240.00336 * 2 1 3 29 29 H 1.09000 * 109.47267 * 120.00142 * 2 1 3 30 30 H 1.08000 * 126.29488 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47058 * 30.27779 * 9 8 6 32 32 H 1.09004 * 109.47205 * 150.27171 * 9 8 6 33 33 H 0.97003 * 120.00209 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47448 * 31.20316 * 18 8 6 35 35 H 1.08998 * 109.47376 * 151.20600 * 18 8 6 36 36 H 1.09004 * 115.55489 * 29.42177 * 19 18 8 37 37 H 1.09003 * 117.50030 * 359.97438 * 20 19 18 38 38 H 1.08995 * 117.50259 * 145.02209 * 20 19 18 39 39 H 1.08999 * 117.50166 * 214.98151 * 21 19 18 40 40 H 1.09005 * 117.49334 * 0.02562 * 21 19 18 41 41 H 1.09002 * 109.47427 * 89.99950 * 23 22 5 42 42 H 1.08996 * 109.47379 * 210.00427 * 23 22 5 43 43 H 1.09000 * 109.46963 * 330.00289 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8729 1.9111 0.8897 5 6 3.0706 3.2311 0.5371 6 6 3.9321 4.2035 1.2340 7 8 3.9091 5.3761 0.9127 8 7 4.7452 3.7928 2.2273 9 6 5.5024 4.7749 3.0074 10 6 6.8360 5.0188 2.3493 11 1 7.0936 4.4950 1.4407 12 6 7.7268 5.9114 2.9066 13 7 7.4129 6.5497 4.0128 14 14 9.3796 6.2143 2.0905 15 1 9.1651 6.7327 0.7156 16 1 10.1471 7.2097 2.8813 17 1 10.1407 4.9407 2.0263 18 6 4.8766 2.3641 2.5230 19 6 3.8082 1.9531 3.5381 20 6 4.2854 1.4581 4.9049 21 6 3.7041 0.4682 3.8923 22 6 2.2977 3.4740 -0.6204 23 6 2.2067 4.7800 -1.3666 24 7 1.6771 2.3692 -0.9305 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3210 1.3996 1.7287 31 1 4.9441 5.7099 3.0545 32 1 5.6595 4.3943 4.0166 33 1 8.0398 7.1775 4.4052 34 1 4.7464 1.7897 1.6058 35 1 5.8656 2.1681 2.9371 36 1 2.8831 2.5288 3.5064 37 1 5.3607 1.4248 5.0808 38 1 3.6744 1.7079 5.7722 39 1 2.7107 0.0673 4.0938 40 1 4.3971 -0.2157 3.4023 41 1 2.9785 4.8138 -2.1356 42 1 1.2252 4.8644 -1.8330 43 1 2.3506 5.6067 -0.6709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599326215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:40 Heat of formation + Delta-G solvation = 59.995874 kcal Electronic energy + Delta-G solvation = -24009.941439 eV Core-core repulsion = 20671.679846 eV Total energy + Delta-G solvation = -3338.261593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56826 -40.26673 -38.56894 -36.12419 -35.61406 -34.64220 -32.43476 -31.43880 -29.41052 -28.70832 -27.77929 -25.33017 -24.05326 -23.40108 -22.56948 -22.05304 -20.94014 -19.88206 -18.59397 -18.15055 -17.33647 -16.96081 -16.70219 -16.14830 -16.02300 -15.82914 -15.30447 -15.04728 -14.73422 -14.30700 -14.21046 -14.02406 -13.84892 -13.44831 -13.33084 -13.11884 -12.97088 -12.79965 -12.69135 -12.58299 -12.52721 -12.28502 -12.25229 -12.15416 -11.72406 -11.65121 -11.31062 -10.92973 -10.61402 -10.57566 -10.23887 -9.68200 -9.33484 -8.18582 -6.32908 0.58327 1.14234 1.37375 1.42135 1.47013 1.49529 2.30041 2.46688 2.56056 2.90181 3.10485 3.35764 3.66692 3.77608 3.97662 4.00009 4.07864 4.12196 4.15221 4.27449 4.40414 4.43491 4.52836 4.59892 4.73889 4.78683 4.81781 4.82825 4.86674 4.99860 5.03449 5.08321 5.10600 5.26389 5.27238 5.27648 5.34031 5.56763 5.61628 5.89375 5.98652 6.10999 6.57109 6.74553 6.84944 7.32348 7.55812 8.87976 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016489 B = 0.005115 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.725910 B = 5473.300037 C = 6626.247100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 N -0.353 5.353 4 C 0.097 3.903 5 C -0.316 4.316 6 C 0.573 3.427 7 O -0.592 6.592 8 N -0.596 5.596 9 C 0.270 3.730 10 C -0.541 4.541 11 H 0.049 0.951 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.964 3.036 15 H -0.280 1.280 16 H -0.277 1.277 17 H -0.260 1.260 18 C 0.126 3.874 19 C -0.204 4.204 20 C -0.179 4.179 21 C -0.144 4.144 22 C 0.110 3.890 23 C -0.074 4.074 24 N -0.317 5.317 25 H 0.107 0.893 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.235 0.765 31 H -0.006 1.006 32 H 0.026 0.974 33 H 0.267 0.733 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -20.408 -3.588 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.006 4.006 3 N -0.131 5.131 4 C -0.055 4.055 5 C -0.331 4.331 6 C 0.364 3.636 7 O -0.474 6.474 8 N -0.325 5.325 9 C 0.149 3.851 10 C -0.579 4.579 11 H 0.068 0.932 12 C -0.188 4.188 13 N -0.567 5.567 14 Si 0.789 3.211 15 H -0.206 1.206 16 H -0.202 1.202 17 H -0.184 1.184 18 C 0.004 3.996 19 C -0.224 4.224 20 C -0.216 4.216 21 C -0.181 4.181 22 C -0.057 4.057 23 C -0.133 4.133 24 N -0.140 5.140 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.154 0.846 30 H 0.250 0.750 31 H 0.012 0.988 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.476 -20.417 -4.426 24.333 hybrid contribution 1.518 1.498 0.471 2.184 sum -10.958 -18.919 -3.955 22.219 Atomic orbital electron populations 1.22028 0.93162 1.04385 1.02247 1.22349 0.96740 0.74833 1.06672 1.48994 1.33275 1.11316 1.19528 1.24851 0.91772 0.93101 0.95730 1.20332 1.12354 0.95804 1.04577 1.17828 0.79369 0.87127 0.79288 1.90653 1.69994 1.20438 1.66344 1.47927 1.43022 1.08049 1.33532 1.18672 0.89513 0.86668 0.90219 1.21662 1.01435 1.24933 1.09900 0.93243 1.25798 1.02514 0.95018 0.95508 1.70044 1.37766 1.28054 1.20844 0.85523 0.78914 0.78574 0.78123 1.20588 1.20214 1.18450 1.21701 0.98914 0.80456 0.98579 1.22800 1.00609 0.99771 0.99198 1.23062 1.01634 1.04165 0.92707 1.23266 1.04247 0.89377 1.01229 1.22602 0.93406 0.95734 0.93929 1.20268 1.03277 0.90333 0.99373 1.76970 1.25042 0.96961 1.14981 0.87492 0.92912 0.93131 0.88037 0.84556 0.74994 0.98772 0.95580 0.92445 0.88397 0.90277 0.88837 0.89015 0.88548 0.86033 0.86132 0.90242 0.89260 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.09 71.98 0.73 -1.12 16 2 C 0.11 1.35 7.21 86.38 0.62 1.97 16 3 N -0.35 -8.34 3.65 -346.28 -1.26 -9.60 16 4 C 0.10 2.58 8.67 84.28 0.73 3.31 16 5 C -0.32 -11.73 5.94 -20.15 -0.12 -11.85 16 6 C 0.57 26.97 7.64 86.66 0.66 27.63 16 7 O -0.59 -33.22 14.55 -4.04 -0.06 -33.28 16 8 N -0.60 -26.86 2.46 -830.05 -2.04 -28.90 16 9 C 0.27 15.05 5.10 85.63 0.44 15.49 16 10 C -0.54 -32.06 9.38 25.60 0.24 -31.82 16 11 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 12 C 0.01 0.62 5.46 84.65 0.46 1.08 16 13 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 14 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 18 C 0.13 4.02 5.15 86.38 0.44 4.46 16 19 C -0.20 -5.04 3.91 -10.79 -0.04 -5.08 16 20 C -0.18 -3.90 10.18 30.62 0.31 -3.59 16 21 C -0.14 -2.04 9.52 30.62 0.29 -1.74 16 22 C 0.11 3.90 7.26 43.51 0.32 4.21 16 23 C -0.07 -2.45 10.01 71.23 0.71 -1.74 16 24 N -0.32 -9.74 12.33 -46.68 -0.58 -10.32 16 25 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.14 0.63 8.06 -2.39 -0.02 0.61 16 30 H 0.23 4.80 2.59 -2.91 -0.01 4.79 16 31 H -0.01 -0.38 7.52 -2.39 -0.02 -0.39 16 32 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.10 2.64 4.98 -2.39 -0.01 2.63 16 35 H 0.08 2.61 7.79 -2.39 -0.02 2.59 16 36 H 0.09 2.63 7.91 -2.38 -0.02 2.61 16 37 H 0.09 2.16 8.03 -2.39 -0.02 2.14 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.07 2.80 6.42 -2.39 -0.02 2.79 16 Total: -1.00 -81.40 353.43 5.18 -76.23 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.00 Total: 13.38 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.80 Total: 1.21 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.59 Total: -105.39 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.06 Total: -33.28 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -81.40 5.18 -76.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599326215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.223 kcal (2) G-P(sol) polarization free energy of solvation -81.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds