Wall clock time and date at job start Tue Mar 31 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47210 * 2 1 4 4 C 1.34291 * 125.74638 * 125.29149 * 3 2 1 5 5 C 1.38109 * 107.39855 * 180.16246 * 4 3 2 6 6 C 1.47357 * 126.42142 * 179.83583 * 5 4 3 7 7 O 1.21629 * 120.00460 * 172.44283 * 6 5 4 8 8 N 1.34781 * 119.99980 * 352.44084 * 6 5 4 9 9 C 1.36979 * 119.99913 * 2.69087 * 8 6 5 10 10 H 1.07999 * 120.00161 * 307.33596 * 9 8 6 11 11 C 1.38980 * 119.99981 * 127.33065 * 9 8 6 12 12 N 1.31406 * 119.99900 * 4.41550 * 11 9 8 13 13 Si 1.86805 * 119.99855 * 184.41400 * 11 9 8 14 14 H 1.48495 * 109.47207 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46869 * 120.00157 * 13 11 9 16 16 H 1.48496 * 109.46959 * 239.99899 * 13 11 9 17 17 C 1.46497 * 120.00262 * 182.68979 * 8 6 5 18 18 C 1.55240 * 110.46694 * 57.16683 * 17 8 6 19 19 C 1.54890 * 102.58969 * 203.39757 * 18 17 8 20 20 C 1.54266 * 104.31262 * 37.92847 * 19 18 17 21 21 C 1.53876 * 106.59918 * 336.32591 * 20 19 18 22 22 C 1.41323 * 107.15695 * 359.57568 * 5 4 3 23 23 C 1.50706 * 125.98425 * 180.24228 * 22 5 4 24 24 N 1.30441 * 108.02772 * 0.26086 * 22 5 4 25 25 H 1.09004 * 109.47111 * 59.99530 * 1 2 3 26 26 H 1.09002 * 109.47589 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47505 * 299.99757 * 1 2 3 28 28 H 1.09006 * 109.47011 * 240.00432 * 2 1 3 29 29 H 1.08998 * 109.47392 * 120.00135 * 2 1 3 30 30 H 1.07997 * 126.30404 * 0.02562 * 4 3 2 31 31 H 0.97006 * 120.00048 * 179.97438 * 12 11 9 32 32 H 1.08998 * 110.43552 * 179.81433 * 17 8 6 33 33 H 1.08998 * 110.89667 * 85.10038 * 18 17 8 34 34 H 1.08998 * 110.76484 * 321.62687 * 18 17 8 35 35 H 1.09006 * 110.48130 * 279.18996 * 19 18 17 36 36 H 1.08997 * 110.48685 * 156.67572 * 19 18 17 37 37 H 1.09004 * 110.02737 * 95.61336 * 20 19 18 38 38 H 1.08996 * 110.03192 * 216.99086 * 20 19 18 39 39 H 1.08999 * 110.02646 * 119.28401 * 21 20 19 40 40 H 1.08993 * 110.02946 * 240.66365 * 21 20 19 41 41 H 1.09000 * 109.46826 * 90.00101 * 23 22 5 42 42 H 1.08999 * 109.46629 * 209.99780 * 23 22 5 43 43 H 1.09005 * 109.47042 * 329.99860 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8735 1.9110 0.8896 5 6 3.0708 3.2317 0.5369 6 6 3.9314 4.2041 1.2335 7 8 4.1289 5.3005 0.7456 8 7 4.4997 3.8784 2.4115 9 6 4.3223 2.6248 2.9342 10 1 3.3261 2.2244 3.0510 11 6 5.4243 1.8680 3.3141 12 7 6.6301 2.3868 3.2533 13 14 5.1914 0.1133 3.9110 14 1 3.7471 -0.2308 3.8851 15 1 5.9369 -0.8147 3.0231 16 1 5.7052 -0.0097 5.2988 17 6 5.3072 4.8652 3.1328 18 6 4.4748 6.1444 3.4172 19 6 5.5685 7.2272 3.5909 20 6 6.6380 6.8609 2.5412 21 6 6.4718 5.3592 2.2500 22 6 2.2974 3.4740 -0.6208 23 6 2.2051 4.7803 -1.3666 24 7 1.6770 2.3691 -0.9304 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.3225 1.3993 1.7280 31 1 7.3993 1.8587 3.5188 32 1 5.6865 4.4405 4.0622 33 1 3.8920 6.0336 4.3316 34 1 3.8282 6.3805 2.5721 35 1 5.9900 7.1859 4.5954 36 1 5.1601 8.2176 3.3899 37 1 6.4797 7.4379 1.6300 38 1 7.6338 7.0570 2.9387 39 1 6.2329 5.2073 1.1974 40 1 7.3873 4.8258 2.5055 41 1 2.9769 4.8149 -2.1356 42 1 1.2235 4.8637 -1.8330 43 1 2.3482 5.6070 -0.6707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:00 Heat of formation + Delta-G solvation = 38.668271 kcal Electronic energy + Delta-G solvation = -24662.208020 eV Core-core repulsion = 21323.021592 eV Total energy + Delta-G solvation = -3339.186427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61755 -38.67822 -35.92518 -34.44527 -34.16804 -31.48573 -30.80715 -29.36226 -27.66160 -27.28875 -26.55928 -24.92728 -22.95563 -21.36148 -20.46002 -19.52702 -18.81523 -18.50701 -17.48121 -15.77584 -15.38986 -15.09797 -14.81288 -14.59315 -14.28089 -13.85346 -13.41001 -13.27171 -12.96238 -12.67502 -12.49792 -12.38831 -12.27170 -12.01834 -11.73392 -11.62656 -11.45102 -11.29236 -11.17054 -11.12608 -10.67159 -10.39336 -10.29632 -10.20076 -10.10883 -9.97843 -9.77501 -9.44786 -8.86138 -8.58990 -8.15646 -7.73078 -7.17807 -6.42892 -4.26223 2.47751 2.96825 2.99889 3.05866 3.08525 3.11772 3.97035 4.65671 4.75420 4.92448 4.97466 5.08657 5.25139 5.44685 5.60280 5.61799 5.67917 5.68306 5.78222 5.85034 6.00802 6.13914 6.25966 6.34065 6.42142 6.43980 6.50085 6.56969 6.61975 6.64441 6.70201 6.75685 6.81434 6.92469 7.04791 7.27323 7.28678 7.36660 7.52713 7.59122 7.66102 8.10742 8.35963 8.43065 9.00983 9.64629 10.06923 10.61516 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.007537 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.733214 B = 3713.989245 C = 5425.707638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 N -0.382 5.382 4 C 0.097 3.903 5 C -0.260 4.260 6 C 0.560 3.440 7 O -0.593 6.593 8 N -0.440 5.440 9 C -0.350 4.350 10 H 0.087 0.913 11 C 0.053 3.947 12 N -0.850 5.850 13 Si 0.899 3.101 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.176 3.824 18 C -0.145 4.145 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.116 4.116 22 C 0.113 3.887 23 C -0.065 4.065 24 N -0.326 5.326 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.212 0.788 31 H 0.270 0.730 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 -2.296 -1.301 6.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.162 5.162 4 C -0.050 4.050 5 C -0.274 4.274 6 C 0.350 3.650 7 O -0.480 6.480 8 N -0.157 5.157 9 C -0.478 4.478 10 H 0.105 0.895 11 C -0.155 4.155 12 N -0.484 5.484 13 Si 0.724 3.276 14 H -0.191 1.191 15 H -0.203 1.203 16 H -0.202 1.202 17 C 0.072 3.928 18 C -0.183 4.183 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.054 4.054 23 C -0.124 4.124 24 N -0.149 5.149 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.228 0.772 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.976 -2.529 -2.270 6.875 hybrid contribution 0.691 -0.897 1.081 1.565 sum -5.285 -3.426 -1.189 6.410 Atomic orbital electron populations 1.22027 0.94256 1.02228 1.03491 1.21578 0.95697 0.78380 1.03402 1.48536 1.36028 1.09728 1.21939 1.25055 0.90628 0.94927 0.94382 1.20366 1.09969 0.95104 1.01933 1.17472 0.81221 0.85865 0.80394 1.90544 1.66024 1.24103 1.67284 1.43085 1.45233 1.11212 1.16219 1.19373 0.92866 0.91838 1.43733 0.89548 1.25627 0.95080 0.98875 0.95922 1.69862 0.98325 1.36642 1.43546 0.86333 0.78850 0.83304 0.79064 1.19076 1.20266 1.20218 1.21571 0.89476 0.86454 0.95325 1.23031 0.98144 0.96199 1.00933 1.22188 0.96816 0.98034 0.98336 1.22035 0.97223 0.98055 0.98125 1.22227 0.99020 0.92686 1.01488 1.22364 0.94117 0.94586 0.94371 1.20161 1.00999 0.91671 0.99522 1.76830 1.26205 0.97144 1.14671 0.91273 0.91225 0.92121 0.90340 0.88840 0.77239 0.91985 0.89284 0.93324 0.90019 0.92782 0.92998 0.92791 0.93507 0.91152 0.91943 0.91113 0.92368 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.09 37.15 0.37 -1.47 16 2 C 0.13 1.72 7.21 -4.04 -0.03 1.69 16 3 N -0.38 -6.94 3.65 -60.78 -0.22 -7.16 16 4 C 0.10 1.99 9.68 -16.52 -0.16 1.83 16 5 C -0.26 -5.87 6.03 -105.06 -0.63 -6.51 16 6 C 0.56 13.74 6.75 -12.55 -0.08 13.66 16 7 O -0.59 -14.97 11.37 5.25 0.06 -14.91 16 8 N -0.44 -10.73 2.51 -107.00 -0.27 -10.99 16 9 C -0.35 -8.31 6.34 -14.98 -0.09 -8.40 16 10 H 0.09 1.97 5.80 -52.49 -0.30 1.67 16 11 C 0.05 1.25 5.29 -17.46 -0.09 1.16 16 12 N -0.85 -21.18 11.29 55.50 0.63 -20.56 16 13 Si 0.90 17.71 29.12 -169.99 -4.95 12.76 16 14 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 15 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 17 C 0.18 4.08 2.25 -66.08 -0.15 3.93 16 18 C -0.14 -3.00 6.27 -24.55 -0.15 -3.16 16 19 C -0.12 -2.08 6.82 -25.07 -0.17 -2.25 16 20 C -0.12 -2.21 6.80 -25.61 -0.17 -2.39 16 21 C -0.12 -2.62 5.80 -25.61 -0.15 -2.77 16 22 C 0.11 2.36 7.26 -82.01 -0.60 1.76 16 23 C -0.06 -1.16 9.86 36.01 0.35 -0.80 16 24 N -0.33 -6.45 12.33 33.90 0.42 -6.04 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.05 8.06 -51.93 -0.42 0.64 16 30 H 0.21 4.24 4.29 -52.49 -0.23 4.01 16 31 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 32 H 0.09 2.20 6.99 -51.93 -0.36 1.84 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.85 6.03 -51.93 -0.31 1.54 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.77 6.05 -51.93 -0.31 1.46 16 40 H 0.06 1.46 7.81 -51.93 -0.41 1.06 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.74 6.73 -51.93 -0.35 1.39 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -28.11 337.66 -7.48 -35.59 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.48 Total: 9.94 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.76 Total: -3.72 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.55 Total: -44.75 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.06 Total: -14.91 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -4.95 Total: 12.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.11 -7.48 -35.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.262 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds