Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47210 * 2 1 4 4 C 1.34291 * 125.74638 * 125.29149 * 3 2 1 5 5 C 1.38109 * 107.39855 * 180.16246 * 4 3 2 6 6 C 1.47357 * 126.42142 * 179.83583 * 5 4 3 7 7 O 1.21629 * 120.00460 * 172.44283 * 6 5 4 8 8 N 1.34781 * 119.99980 * 352.44084 * 6 5 4 9 9 C 1.36979 * 119.99913 * 2.69087 * 8 6 5 10 10 H 1.07999 * 120.00161 * 307.33596 * 9 8 6 11 11 C 1.38980 * 119.99981 * 127.33065 * 9 8 6 12 12 N 1.31406 * 119.99900 * 4.41550 * 11 9 8 13 13 Si 1.86805 * 119.99855 * 184.41400 * 11 9 8 14 14 H 1.48495 * 109.47207 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46869 * 120.00157 * 13 11 9 16 16 H 1.48496 * 109.46959 * 239.99899 * 13 11 9 17 17 C 1.46497 * 120.00262 * 182.68979 * 8 6 5 18 18 C 1.55240 * 110.46694 * 57.16683 * 17 8 6 19 19 C 1.54890 * 102.58969 * 203.39757 * 18 17 8 20 20 C 1.54266 * 104.31262 * 37.92847 * 19 18 17 21 21 C 1.53876 * 106.59918 * 336.32591 * 20 19 18 22 22 C 1.41323 * 107.15695 * 359.57568 * 5 4 3 23 23 C 1.50706 * 125.98425 * 180.24228 * 22 5 4 24 24 N 1.30441 * 108.02772 * 0.26086 * 22 5 4 25 25 H 1.09004 * 109.47111 * 59.99530 * 1 2 3 26 26 H 1.09002 * 109.47589 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47505 * 299.99757 * 1 2 3 28 28 H 1.09006 * 109.47011 * 240.00432 * 2 1 3 29 29 H 1.08998 * 109.47392 * 120.00135 * 2 1 3 30 30 H 1.07997 * 126.30404 * 0.02562 * 4 3 2 31 31 H 0.97006 * 120.00048 * 179.97438 * 12 11 9 32 32 H 1.08998 * 110.43552 * 179.81433 * 17 8 6 33 33 H 1.08998 * 110.89667 * 85.10038 * 18 17 8 34 34 H 1.08998 * 110.76484 * 321.62687 * 18 17 8 35 35 H 1.09006 * 110.48130 * 279.18996 * 19 18 17 36 36 H 1.08997 * 110.48685 * 156.67572 * 19 18 17 37 37 H 1.09004 * 110.02737 * 95.61336 * 20 19 18 38 38 H 1.08996 * 110.03192 * 216.99086 * 20 19 18 39 39 H 1.08999 * 110.02646 * 119.28401 * 21 20 19 40 40 H 1.08993 * 110.02946 * 240.66365 * 21 20 19 41 41 H 1.09000 * 109.46826 * 90.00101 * 23 22 5 42 42 H 1.08999 * 109.46629 * 209.99780 * 23 22 5 43 43 H 1.09005 * 109.47042 * 329.99860 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8735 1.9110 0.8896 5 6 3.0708 3.2317 0.5369 6 6 3.9314 4.2041 1.2335 7 8 4.1289 5.3005 0.7456 8 7 4.4997 3.8784 2.4115 9 6 4.3223 2.6248 2.9342 10 1 3.3261 2.2244 3.0510 11 6 5.4243 1.8680 3.3141 12 7 6.6301 2.3868 3.2533 13 14 5.1914 0.1133 3.9110 14 1 3.7471 -0.2308 3.8851 15 1 5.9369 -0.8147 3.0231 16 1 5.7052 -0.0097 5.2988 17 6 5.3072 4.8652 3.1328 18 6 4.4748 6.1444 3.4172 19 6 5.5685 7.2272 3.5909 20 6 6.6380 6.8609 2.5412 21 6 6.4718 5.3592 2.2500 22 6 2.2974 3.4740 -0.6208 23 6 2.2051 4.7803 -1.3666 24 7 1.6770 2.3691 -0.9304 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.3225 1.3993 1.7280 31 1 7.3993 1.8587 3.5188 32 1 5.6865 4.4405 4.0622 33 1 3.8920 6.0336 4.3316 34 1 3.8282 6.3805 2.5721 35 1 5.9900 7.1859 4.5954 36 1 5.1601 8.2176 3.3899 37 1 6.4797 7.4379 1.6300 38 1 7.6338 7.0570 2.9387 39 1 6.2329 5.2073 1.1974 40 1 7.3873 4.8258 2.5055 41 1 2.9769 4.8149 -2.1356 42 1 1.2235 4.8637 -1.8330 43 1 2.3482 5.6070 -0.6707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599538028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = 23.866299 kcal Electronic energy + Delta-G solvation = -24662.849882 eV Core-core repulsion = 21323.021592 eV Total energy + Delta-G solvation = -3339.828289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.18118 -40.44255 -37.63746 -36.18573 -35.49707 -33.29274 -32.17901 -30.92793 -29.35504 -28.73694 -28.18201 -26.70969 -24.24120 -22.92798 -22.10975 -21.11121 -20.51555 -20.22853 -19.09805 -17.35417 -17.04364 -16.57310 -16.42721 -16.23813 -15.84261 -15.29567 -14.87519 -14.86001 -14.60113 -14.27850 -14.13941 -13.90476 -13.68638 -13.41900 -13.12877 -13.02738 -12.93751 -12.82544 -12.68832 -12.33959 -12.24602 -11.96824 -11.91382 -11.88171 -11.76232 -11.58743 -11.46320 -11.11136 -10.66705 -10.09301 -10.00156 -9.37941 -9.00081 -8.22571 -6.12590 0.88952 1.35637 1.47160 1.48260 1.57744 1.65377 2.30823 2.86051 3.14987 3.18828 3.57899 4.00779 4.05895 4.07678 4.12044 4.16746 4.20913 4.38742 4.45964 4.66534 4.78264 4.81188 4.83195 4.84346 4.89349 4.93460 4.93886 4.99356 5.04729 5.10388 5.16862 5.22576 5.25039 5.27013 5.32849 5.45582 5.60777 5.68558 5.76159 5.80035 6.19600 6.28208 6.57831 6.80990 7.17770 7.80526 8.23178 8.82248 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013187 B = 0.007537 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.733214 B = 3713.989245 C = 5425.707638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.114 3.886 3 N -0.371 5.371 4 C 0.102 3.898 5 C -0.298 4.298 6 C 0.547 3.453 7 O -0.612 6.612 8 N -0.450 5.450 9 C -0.361 4.361 10 H 0.095 0.905 11 C 0.012 3.988 12 N -0.883 5.883 13 Si 0.964 3.036 14 H -0.241 1.241 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.172 3.828 18 C -0.139 4.139 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.108 4.108 22 C 0.100 3.900 23 C -0.059 4.059 24 N -0.327 5.327 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.215 0.785 31 H 0.269 0.731 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -3.623 -0.894 7.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 N -0.151 5.151 4 C -0.047 4.047 5 C -0.312 4.312 6 C 0.339 3.661 7 O -0.500 6.500 8 N -0.168 5.168 9 C -0.489 4.489 10 H 0.112 0.888 11 C -0.193 4.193 12 N -0.518 5.518 13 Si 0.787 3.213 14 H -0.164 1.164 15 H -0.205 1.205 16 H -0.207 1.207 17 C 0.068 3.932 18 C -0.178 4.178 19 C -0.144 4.144 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.068 4.068 23 C -0.117 4.117 24 N -0.150 5.150 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.231 0.769 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.144 -3.870 -1.874 8.338 hybrid contribution 1.024 -0.555 0.925 1.487 sum -6.121 -4.425 -0.949 7.612 Atomic orbital electron populations 1.21987 0.92715 1.04214 1.02280 1.22147 0.97032 0.75817 1.05496 1.48965 1.34653 1.11044 1.20458 1.24932 0.90766 0.94360 0.94675 1.20461 1.11362 0.95990 1.03386 1.17845 0.81541 0.86204 0.80546 1.90502 1.66819 1.24914 1.67765 1.43292 1.45253 1.11829 1.16445 1.19672 0.93475 0.91981 1.43755 0.88773 1.26406 0.94488 1.02611 0.95762 1.70004 0.99121 1.38111 1.44578 0.85324 0.80115 0.78080 0.77815 1.16352 1.20475 1.20747 1.21571 0.90058 0.87184 0.94393 1.22938 0.98492 0.96037 1.00317 1.22176 0.95303 0.98004 0.98942 1.22000 0.99029 0.95118 0.98778 1.22082 0.98021 0.95322 0.99206 1.22707 0.94023 0.95784 0.94249 1.20138 1.02606 0.89966 0.99026 1.76785 1.25949 0.97182 1.15037 0.92636 0.87631 0.93115 0.88556 0.86487 0.76947 0.92136 0.91239 0.92488 0.92147 0.90870 0.90738 0.92792 0.91210 0.94472 0.93633 0.90659 0.89808 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.09 71.98 0.73 -2.32 16 2 C 0.11 2.65 7.21 86.38 0.62 3.28 16 3 N -0.37 -12.92 3.65 -346.21 -1.26 -14.18 16 4 C 0.10 4.13 9.68 84.29 0.82 4.95 16 5 C -0.30 -13.69 6.03 -20.15 -0.12 -13.81 16 6 C 0.55 27.81 6.75 86.64 0.58 28.40 16 7 O -0.61 -32.21 11.37 -4.12 -0.05 -32.25 16 8 N -0.45 -22.65 2.51 -610.67 -1.53 -24.18 16 9 C -0.36 -17.33 6.34 84.07 0.53 -16.80 16 10 H 0.10 4.28 5.80 -2.91 -0.02 4.26 16 11 C 0.01 0.59 5.29 84.93 0.45 1.04 16 12 N -0.88 -45.07 11.29 21.67 0.24 -44.82 16 13 Si 0.96 35.62 29.12 68.60 2.00 37.62 16 14 H -0.24 -7.82 7.11 99.48 0.71 -7.11 16 15 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.28 -10.61 7.11 99.48 0.71 -9.91 16 17 C 0.17 8.20 2.25 46.19 0.10 8.30 16 18 C -0.14 -5.82 6.27 32.01 0.20 -5.62 16 19 C -0.11 -3.67 6.82 31.67 0.22 -3.45 16 20 C -0.11 -4.18 6.80 31.32 0.21 -3.96 16 21 C -0.11 -5.03 5.80 31.32 0.18 -4.85 16 22 C 0.10 4.15 7.26 43.53 0.32 4.47 16 23 C -0.06 -2.11 9.86 71.24 0.70 -1.41 16 24 N -0.33 -12.60 12.33 -46.65 -0.58 -13.18 16 25 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.12 2.19 8.06 -2.39 -0.02 2.17 16 30 H 0.21 8.39 4.29 -2.91 -0.01 8.38 16 31 H 0.27 13.06 8.31 -92.70 -0.77 12.29 16 32 H 0.07 3.54 6.99 -2.39 -0.02 3.53 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.06 2.79 6.03 -2.39 -0.01 2.78 16 35 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.04 1.95 6.05 -2.39 -0.01 1.94 16 40 H 0.04 2.22 7.81 -2.39 -0.02 2.20 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.07 2.93 6.73 -2.38 -0.02 2.92 16 Total: -1.00 -62.81 337.66 5.38 -57.44 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 1.01 Total: 35.37 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 5.54 Total: -1.80 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -3.13 Total: -96.37 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.00 Total: 37.62 kcal Total: -62.81 5.38 -57.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.304 kcal (2) G-P(sol) polarization free energy of solvation -62.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds