Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46805 * 2 1 4 4 C 1.34255 * 125.75530 * 124.97797 * 3 2 1 5 5 C 1.38053 * 107.41769 * 179.97438 * 4 3 2 6 6 C 1.47422 * 126.41176 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99718 * 220.46850 * 6 5 4 8 8 N 1.34770 * 120.00508 * 40.47867 * 6 5 4 9 9 C 1.46935 * 120.62694 * 5.23569 * 8 6 5 10 10 C 1.53622 * 108.54017 * 126.37085 * 9 8 6 11 11 C 1.53033 * 109.24289 * 54.85886 * 10 9 8 12 12 C 1.53040 * 109.53669 * 298.50757 * 11 10 9 13 13 H 1.09001 * 109.49534 * 301.41037 * 12 11 10 14 14 C 1.50709 * 109.49785 * 181.31828 * 12 11 10 15 15 H 1.08003 * 119.99956 * 0.16147 * 14 12 11 16 16 C 1.37874 * 120.00021 * 180.15892 * 14 12 11 17 17 N 1.31519 * 119.99769 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00058 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47144 * 89.99961 * 18 16 14 20 20 H 1.48501 * 109.47371 * 210.00341 * 18 16 14 21 21 H 1.48498 * 109.47154 * 330.00342 * 18 16 14 22 22 C 1.46925 * 120.63576 * 185.51967 * 8 6 5 23 23 C 1.41286 * 107.16939 * 359.97438 * 5 4 3 24 24 C 1.50696 * 125.99075 * 180.26059 * 23 5 4 25 25 N 1.30453 * 108.02526 * 0.02562 * 23 5 4 26 26 H 1.08999 * 109.47337 * 299.99640 * 1 2 3 27 27 H 1.08993 * 109.47209 * 60.00275 * 1 2 3 28 28 H 1.09004 * 109.46589 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47337 * 240.00360 * 2 1 3 30 30 H 1.08993 * 109.47209 * 119.99724 * 2 1 3 31 31 H 1.07998 * 126.29032 * 359.97238 * 4 3 2 32 32 H 1.08999 * 109.58358 * 246.20369 * 9 8 6 33 33 H 1.08997 * 109.58503 * 6.62651 * 9 8 6 34 34 H 1.08994 * 109.63496 * 294.86282 * 10 9 8 35 35 H 1.09001 * 109.45429 * 174.73852 * 10 9 8 36 36 H 1.09003 * 109.46337 * 178.48580 * 11 10 9 37 37 H 1.08999 * 109.45362 * 58.52501 * 11 10 9 38 38 H 0.97008 * 119.99495 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.58441 * 353.36526 * 22 8 6 40 40 H 1.08996 * 109.58855 * 113.79651 * 22 8 6 41 41 H 1.09004 * 109.47493 * 269.72155 * 24 23 5 42 42 H 1.09005 * 109.46568 * 29.71597 * 24 23 5 43 43 H 1.08999 * 109.47364 * 149.71400 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8686 1.9128 0.8927 5 6 3.0710 3.2311 0.5365 6 6 3.9319 4.2037 1.2338 7 8 3.5596 5.3526 1.3765 8 7 5.1316 3.8197 1.7131 9 6 5.6453 2.4686 1.4497 10 6 7.0461 2.5906 0.8309 11 6 7.9329 3.4312 1.7521 12 6 7.3427 4.8367 1.8880 13 1 7.2689 5.2970 0.9027 14 6 8.2340 5.6735 2.7693 15 1 9.1332 5.2468 3.1886 16 6 7.9014 6.9838 3.0403 17 7 6.8062 7.5033 2.5301 18 14 9.0057 8.0208 4.1333 19 1 10.0209 8.7116 3.2981 20 1 8.1855 9.0295 4.8509 21 1 9.6886 7.1456 5.1196 22 6 5.9478 4.7421 2.5141 23 6 2.2987 3.4735 -0.6215 24 6 2.2120 4.7780 -1.3710 25 7 1.6777 2.3689 -0.9311 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.3126 1.4027 1.7348 32 1 5.7030 1.9110 2.3845 33 1 4.9811 1.9541 0.7554 34 1 6.9750 3.0720 -0.1444 35 1 7.4798 1.5973 0.7155 36 1 8.9356 3.4977 1.3296 37 1 7.9835 2.9621 2.7347 38 1 6.5720 8.4251 2.7211 39 1 5.4834 5.7282 2.5222 40 1 6.0298 4.3661 3.5339 41 1 1.3952 5.3759 -0.9665 42 1 3.1497 5.3228 -1.2617 43 1 2.0284 4.5789 -2.4268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600093152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = 32.102820 kcal Electronic energy + Delta-G solvation = -23940.028624 eV Core-core repulsion = 20600.557497 eV Total energy + Delta-G solvation = -3339.471127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35096 -38.90870 -36.51270 -34.81865 -33.37611 -31.83971 -31.32325 -30.24127 -29.28779 -27.69069 -25.03427 -24.88311 -23.28392 -21.85220 -21.68809 -20.19847 -19.29059 -18.27681 -16.93494 -16.34684 -15.97994 -15.52978 -15.07407 -14.57892 -14.38777 -14.16006 -13.97115 -13.56480 -13.22105 -13.09689 -12.87376 -12.54203 -12.48463 -12.42567 -12.21572 -11.95465 -11.91880 -11.76773 -11.60360 -10.95533 -10.89884 -10.61437 -10.46365 -10.35833 -10.18508 -9.83559 -9.24062 -9.21632 -9.07227 -8.83763 -8.39337 -8.37467 -7.62421 -5.94693 -4.03830 1.71466 2.34552 2.48355 3.33406 3.40944 3.43003 3.66610 3.98014 4.27929 4.46636 4.63947 4.68239 4.81784 4.90642 5.17815 5.33099 5.34490 5.36369 5.43700 5.47913 5.54614 5.72427 5.75570 5.79681 5.89161 6.00344 6.06968 6.15036 6.23303 6.35338 6.64110 6.68804 6.73859 6.87197 6.92070 7.02769 7.22945 7.39487 7.68825 7.72702 7.93890 8.06327 8.37639 8.44489 8.98644 9.06224 9.61552 11.10245 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026335 B = 0.004098 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.987034 B = 6830.542391 C = 7418.731026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 N -0.366 5.366 4 C 0.086 3.914 5 C -0.268 4.268 6 C 0.581 3.419 7 O -0.533 6.533 8 N -0.603 5.603 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.878 5.878 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.115 3.885 23 C 0.123 3.877 24 C -0.072 4.072 25 N -0.303 5.303 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.180 0.820 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.263 0.737 39 H 0.123 0.877 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 -16.379 -4.799 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.145 5.145 4 C -0.063 4.063 5 C -0.283 4.283 6 C 0.368 3.632 7 O -0.410 6.410 8 N -0.336 5.336 9 C -0.019 4.019 10 C -0.171 4.171 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.005 4.005 23 C -0.044 4.044 24 C -0.130 4.130 25 N -0.126 5.126 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.197 0.803 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.533 -16.303 -5.521 20.179 hybrid contribution 1.237 0.668 1.304 1.918 sum -9.295 -15.634 -4.217 18.671 Atomic orbital electron populations 1.22054 0.93719 1.02767 1.03780 1.21730 0.96219 0.77336 1.03883 1.48418 1.35097 1.10222 1.20811 1.23068 0.93933 0.93665 0.95638 1.20499 1.10065 0.94531 1.03195 1.17315 0.80878 0.86620 0.78424 1.90786 1.73328 1.18970 1.57912 1.48364 1.17931 1.14394 1.52868 1.21870 0.95769 0.84799 0.99462 1.22004 0.95375 0.99660 1.00042 1.21623 0.97771 0.97896 0.97480 1.18960 0.91400 0.90333 0.97198 0.95291 1.21076 1.08048 0.96025 1.30876 0.92462 1.25052 0.95182 0.97887 0.95896 1.69900 1.23372 1.14585 1.43702 0.86614 0.80544 0.80220 0.80724 1.20735 1.21198 1.19974 1.22257 0.92794 0.94465 0.91030 1.22399 0.93003 0.94931 0.94023 1.20218 1.04405 0.90196 0.98212 1.77047 1.24658 0.96877 1.13987 0.92015 0.90983 0.90736 0.89577 0.88548 0.80280 0.92403 0.90868 0.92164 0.92521 0.93137 0.93280 0.92670 0.85873 0.94134 0.90010 0.89682 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.09 37.16 0.37 -0.79 16 2 C 0.13 0.96 7.21 -4.04 -0.03 0.94 16 3 N -0.37 -4.46 3.65 -60.81 -0.22 -4.68 16 4 C 0.09 1.13 9.06 -16.56 -0.15 0.98 16 5 C -0.27 -4.57 5.22 -105.07 -0.55 -5.12 16 6 C 0.58 12.23 7.33 -12.52 -0.09 12.13 16 7 O -0.53 -13.42 15.96 5.27 0.08 -13.34 16 8 N -0.60 -12.29 2.97 -173.77 -0.52 -12.80 16 9 C 0.10 1.65 5.50 -3.48 -0.02 1.63 16 10 C -0.13 -2.18 6.10 -26.39 -0.16 -2.34 16 11 C -0.11 -2.20 5.10 -26.69 -0.14 -2.33 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.88 -25.73 11.39 55.43 0.63 -25.10 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.11 2.79 5.41 -3.71 -0.02 2.77 16 23 C 0.12 2.02 7.26 -82.02 -0.60 1.43 16 24 C -0.07 -1.07 9.97 36.00 0.36 -0.71 16 25 N -0.30 -4.55 12.33 33.89 0.42 -4.13 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.18 1.78 7.32 -52.49 -0.38 1.39 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.00 4.78 -51.93 -0.25 0.75 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 3.51 5.11 -51.93 -0.27 3.25 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.41 7.82 -51.93 -0.41 1.00 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -33.42 346.50 -7.78 -41.20 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.76 Total: 0.78 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.61 Total: -3.45 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.31 Total: -46.71 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.42 -7.78 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.303 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds