Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46805 * 2 1 4 4 C 1.34255 * 125.75530 * 124.97797 * 3 2 1 5 5 C 1.38053 * 107.41769 * 179.97438 * 4 3 2 6 6 C 1.47422 * 126.41176 * 179.97438 * 5 4 3 7 7 O 1.21609 * 119.99718 * 220.46850 * 6 5 4 8 8 N 1.34770 * 120.00508 * 40.47867 * 6 5 4 9 9 C 1.46935 * 120.62694 * 5.23569 * 8 6 5 10 10 C 1.53622 * 108.54017 * 126.37085 * 9 8 6 11 11 C 1.53033 * 109.24289 * 54.85886 * 10 9 8 12 12 C 1.53040 * 109.53669 * 298.50757 * 11 10 9 13 13 H 1.09001 * 109.49534 * 301.41037 * 12 11 10 14 14 C 1.50709 * 109.49785 * 181.31828 * 12 11 10 15 15 H 1.08003 * 119.99956 * 0.16147 * 14 12 11 16 16 C 1.37874 * 120.00021 * 180.15892 * 14 12 11 17 17 N 1.31519 * 119.99769 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00058 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47144 * 89.99961 * 18 16 14 20 20 H 1.48501 * 109.47371 * 210.00341 * 18 16 14 21 21 H 1.48498 * 109.47154 * 330.00342 * 18 16 14 22 22 C 1.46925 * 120.63576 * 185.51967 * 8 6 5 23 23 C 1.41286 * 107.16939 * 359.97438 * 5 4 3 24 24 C 1.50696 * 125.99075 * 180.26059 * 23 5 4 25 25 N 1.30453 * 108.02526 * 0.02562 * 23 5 4 26 26 H 1.08999 * 109.47337 * 299.99640 * 1 2 3 27 27 H 1.08993 * 109.47209 * 60.00275 * 1 2 3 28 28 H 1.09004 * 109.46589 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47337 * 240.00360 * 2 1 3 30 30 H 1.08993 * 109.47209 * 119.99724 * 2 1 3 31 31 H 1.07998 * 126.29032 * 359.97238 * 4 3 2 32 32 H 1.08999 * 109.58358 * 246.20369 * 9 8 6 33 33 H 1.08997 * 109.58503 * 6.62651 * 9 8 6 34 34 H 1.08994 * 109.63496 * 294.86282 * 10 9 8 35 35 H 1.09001 * 109.45429 * 174.73852 * 10 9 8 36 36 H 1.09003 * 109.46337 * 178.48580 * 11 10 9 37 37 H 1.08999 * 109.45362 * 58.52501 * 11 10 9 38 38 H 0.97008 * 119.99495 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.58441 * 353.36526 * 22 8 6 40 40 H 1.08996 * 109.58855 * 113.79651 * 22 8 6 41 41 H 1.09004 * 109.47493 * 269.72155 * 24 23 5 42 42 H 1.09005 * 109.46568 * 29.71597 * 24 23 5 43 43 H 1.08999 * 109.47364 * 149.71400 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8686 1.9128 0.8927 5 6 3.0710 3.2311 0.5365 6 6 3.9319 4.2037 1.2338 7 8 3.5596 5.3526 1.3765 8 7 5.1316 3.8197 1.7131 9 6 5.6453 2.4686 1.4497 10 6 7.0461 2.5906 0.8309 11 6 7.9329 3.4312 1.7521 12 6 7.3427 4.8367 1.8880 13 1 7.2689 5.2970 0.9027 14 6 8.2340 5.6735 2.7693 15 1 9.1332 5.2468 3.1886 16 6 7.9014 6.9838 3.0403 17 7 6.8062 7.5033 2.5301 18 14 9.0057 8.0208 4.1333 19 1 10.0209 8.7116 3.2981 20 1 8.1855 9.0295 4.8509 21 1 9.6886 7.1456 5.1196 22 6 5.9478 4.7421 2.5141 23 6 2.2987 3.4735 -0.6215 24 6 2.2120 4.7780 -1.3710 25 7 1.6777 2.3689 -0.9311 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.3126 1.4027 1.7348 32 1 5.7030 1.9110 2.3845 33 1 4.9811 1.9541 0.7554 34 1 6.9750 3.0720 -0.1444 35 1 7.4798 1.5973 0.7155 36 1 8.9356 3.4977 1.3296 37 1 7.9835 2.9621 2.7347 38 1 6.5720 8.4251 2.7211 39 1 5.4834 5.7282 2.5222 40 1 6.0298 4.3661 3.5339 41 1 1.3952 5.3759 -0.9665 42 1 3.1497 5.3228 -1.2617 43 1 2.0284 4.5789 -2.4268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600093152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = 10.314152 kcal Electronic energy + Delta-G solvation = -23940.973451 eV Core-core repulsion = 20600.557497 eV Total energy + Delta-G solvation = -3340.415954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.49010 -40.48282 -38.18616 -35.69679 -35.28297 -33.50449 -32.37778 -31.72621 -30.74582 -28.75924 -26.99285 -26.35350 -24.22167 -23.46472 -22.87595 -21.53765 -20.76584 -19.64110 -18.54301 -17.88681 -17.38393 -16.68099 -16.63119 -16.27737 -15.75805 -15.35040 -15.15081 -14.94684 -14.69809 -14.50287 -14.22885 -14.02981 -13.95660 -13.60102 -13.44865 -13.13116 -13.10258 -12.86924 -12.83871 -12.64443 -12.29588 -12.23671 -12.20561 -11.86176 -11.65264 -11.58669 -11.08368 -10.91347 -10.65302 -10.48743 -10.26321 -9.62360 -9.26489 -8.07097 -6.24935 0.63222 1.17946 1.42059 1.43014 1.45662 1.53921 2.14627 2.42497 2.50309 3.20585 3.37547 3.73332 3.98915 3.99625 4.11349 4.12856 4.20277 4.24830 4.39650 4.42406 4.58680 4.62349 4.68771 4.75815 4.79770 4.81175 4.84058 4.91582 4.92775 5.01424 5.12066 5.25811 5.29162 5.31192 5.40225 5.51109 5.59297 5.71559 5.94179 5.98274 6.05229 6.36782 6.57109 6.78509 6.88578 7.43286 7.47152 8.95915 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026335 B = 0.004098 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.987034 B = 6830.542391 C = 7418.731026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.352 5.352 4 C 0.117 3.883 5 C -0.307 4.307 6 C 0.577 3.423 7 O -0.593 6.593 8 N -0.606 5.606 9 C 0.102 3.898 10 C -0.127 4.127 11 C -0.104 4.104 12 C 0.038 3.962 13 H -0.019 1.019 14 C -0.536 4.536 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.914 5.914 18 Si 0.958 3.042 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.128 3.872 23 C 0.106 3.894 24 C -0.069 4.069 25 N -0.313 5.313 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.222 0.778 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.041 0.959 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.259 0.741 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -20.704 -4.187 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.002 4.002 3 N -0.130 5.130 4 C -0.035 4.035 5 C -0.322 4.322 6 C 0.366 3.634 7 O -0.474 6.474 8 N -0.337 5.337 9 C -0.020 4.020 10 C -0.165 4.165 11 C -0.141 4.141 12 C 0.019 3.981 13 H -0.001 1.001 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.553 5.553 18 Si 0.783 3.217 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.184 1.184 22 C 0.006 3.994 23 C -0.061 4.061 24 C -0.127 4.127 25 N -0.136 5.136 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.155 0.845 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.246 -20.706 -4.937 23.623 hybrid contribution 1.102 1.897 1.077 2.443 sum -9.144 -18.809 -3.860 21.267 Atomic orbital electron populations 1.22039 0.93577 1.04263 1.02143 1.22314 0.96389 0.74763 1.06740 1.48891 1.33630 1.11243 1.19268 1.23483 0.92471 0.91968 0.95622 1.20187 1.11737 0.95777 1.04502 1.17920 0.81153 0.86609 0.77700 1.90741 1.74694 1.21861 1.60144 1.48358 1.17446 1.15742 1.52136 1.22239 0.95556 0.82451 1.01760 1.21978 0.95342 1.01110 0.98033 1.21506 0.98140 0.95274 0.99223 1.18899 0.91990 0.93084 0.94135 1.00096 1.21522 1.08444 0.96653 1.30785 0.91904 1.25912 0.96408 0.99400 0.97346 1.70118 1.25307 1.14523 1.45349 0.85561 0.78592 0.78499 0.79037 1.20287 1.21413 1.18436 1.21672 0.92671 0.93433 0.91652 1.22500 0.93531 0.95628 0.94399 1.20145 1.02830 0.90077 0.99681 1.77009 1.24613 0.96979 1.15038 0.93125 0.93138 0.87689 0.87868 0.84545 0.76210 0.89073 0.88106 0.94049 0.87762 0.93226 0.91951 0.93220 0.90709 0.94086 0.90162 0.92469 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.09 71.98 0.73 -1.00 16 2 C 0.12 1.16 7.21 86.38 0.62 1.78 16 3 N -0.35 -7.30 3.65 -346.29 -1.26 -8.57 16 4 C 0.12 2.62 9.06 84.28 0.76 3.39 16 5 C -0.31 -10.29 5.22 -20.15 -0.11 -10.40 16 6 C 0.58 25.13 7.33 86.66 0.64 25.77 16 7 O -0.59 -32.22 15.96 -4.06 -0.06 -32.28 16 8 N -0.61 -24.83 2.97 -821.94 -2.44 -27.27 16 9 C 0.10 2.87 5.50 86.51 0.48 3.34 16 10 C -0.13 -3.81 6.10 30.81 0.19 -3.62 16 11 C -0.10 -4.01 5.10 30.62 0.16 -3.86 16 12 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 13 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 14 C -0.54 -29.80 8.56 25.60 0.22 -29.58 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.01 0.50 5.30 84.65 0.45 0.95 16 17 N -0.91 -56.70 11.39 21.45 0.24 -56.46 16 18 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.13 6.48 5.41 86.36 0.47 6.94 16 23 C 0.11 3.47 7.26 43.51 0.32 3.79 16 24 C -0.07 -2.17 9.97 71.23 0.71 -1.46 16 25 N -0.31 -8.90 12.33 -46.68 -0.58 -9.48 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.14 0.37 8.06 -2.39 -0.02 0.35 16 31 H 0.22 3.03 7.32 -2.91 -0.02 3.01 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.10 2.32 4.78 -2.39 -0.01 2.30 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 39 H 0.07 4.57 5.11 -2.39 -0.01 4.56 16 40 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 41 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 42 H 0.06 2.09 7.82 -2.38 -0.02 2.07 16 43 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -80.95 346.50 4.52 -76.43 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.99 Total: 12.89 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.60 Total: -2.02 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -4.03 Total: -101.77 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.06 Total: -32.28 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -80.95 4.52 -76.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.748 kcal (2) G-P(sol) polarization free energy of solvation -80.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds