Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46800 * 2 1 4 4 C 1.34262 * 125.75768 * 125.00523 * 3 2 1 5 5 C 1.38035 * 107.42183 * 180.02562 * 4 3 2 6 6 C 1.47427 * 126.41813 * 179.97438 * 5 4 3 7 7 O 1.21607 * 119.99804 * 138.56087 * 6 5 4 8 8 N 1.34774 * 119.99980 * 318.56469 * 6 5 4 9 9 C 1.46927 * 120.63023 * 354.59936 * 8 6 5 10 10 C 1.53197 * 108.77436 * 233.60759 * 9 8 6 11 11 C 1.53041 * 109.31325 * 305.36460 * 10 9 8 12 12 C 1.53039 * 109.53574 * 61.36340 * 11 10 9 13 13 H 1.09004 * 109.50010 * 58.62267 * 12 11 10 14 14 C 1.50699 * 109.49662 * 178.68006 * 12 11 10 15 15 H 1.07997 * 120.00287 * 4.42869 * 14 12 11 16 16 C 1.37884 * 120.00424 * 184.14959 * 14 12 11 17 17 N 1.31514 * 119.99475 * 356.95261 * 16 14 12 18 18 Si 1.86796 * 120.00311 * 176.95713 * 16 14 12 19 19 H 1.48497 * 109.47106 * 94.99085 * 18 16 14 20 20 H 1.48497 * 109.47117 * 214.98966 * 18 16 14 21 21 H 1.48498 * 109.47134 * 334.99280 * 18 16 14 22 22 C 1.46933 * 120.60681 * 174.61941 * 8 6 5 23 23 C 1.41288 * 107.16983 * 0.22453 * 5 4 3 24 24 C 1.50702 * 125.99386 * 179.73801 * 23 5 4 25 25 N 1.30456 * 108.02391 * 359.61619 * 23 5 4 26 26 H 1.08996 * 109.47319 * 60.00181 * 1 2 3 27 27 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47175 * 300.00329 * 1 2 3 29 29 H 1.09002 * 109.47175 * 239.99671 * 2 1 3 30 30 H 1.09004 * 109.47106 * 119.99565 * 2 1 3 31 31 H 1.08006 * 126.28473 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.59047 * 113.82220 * 9 8 6 33 33 H 1.09003 * 109.58656 * 353.39128 * 9 8 6 34 34 H 1.08998 * 109.49749 * 185.41346 * 10 9 8 35 35 H 1.09001 * 109.52305 * 65.33353 * 10 9 8 36 36 H 1.08996 * 109.46307 * 301.34357 * 11 10 9 37 37 H 1.08997 * 109.44622 * 181.37544 * 11 10 9 38 38 H 0.97001 * 119.99728 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.61233 * 6.62104 * 22 8 6 40 40 H 1.08997 * 109.56350 * 246.19441 * 22 8 6 41 41 H 1.08993 * 109.47330 * 89.99604 * 24 23 5 42 42 H 1.08998 * 109.47331 * 210.00298 * 24 23 5 43 43 H 1.09003 * 109.46848 * 329.99955 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8690 1.9127 0.8924 5 6 3.0704 3.2312 0.5371 6 6 3.9312 4.2039 1.2344 7 8 4.6277 4.9680 0.5941 8 7 3.9463 4.2463 2.5814 9 6 3.0256 3.4132 3.3669 10 6 2.2554 4.3119 4.3395 11 6 3.2493 5.1156 5.1812 12 6 4.0927 6.0058 4.2656 13 1 3.4390 6.6736 3.7044 14 6 5.0488 6.8207 5.0980 15 1 5.1052 6.6634 6.1650 16 6 5.8559 7.7631 4.4967 17 7 5.8348 7.9093 3.1899 18 14 6.9793 8.8321 5.5381 19 1 8.3327 8.2233 5.5910 20 1 7.0694 10.1873 4.9377 21 1 6.4290 8.9355 6.9135 22 6 4.8837 5.1270 3.2917 23 6 2.2924 3.4757 -0.6167 24 6 2.1941 4.7843 -1.3576 25 7 1.6761 2.3694 -0.9299 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.3134 1.4024 1.7342 32 1 3.5929 2.6701 3.9273 33 1 2.3247 2.9131 2.6985 34 1 1.6393 3.6955 4.9942 35 1 1.6185 4.9951 3.7776 36 1 3.9016 4.4318 5.7242 37 1 2.7040 5.7378 5.8908 38 1 6.4024 8.5725 2.7668 39 1 5.4085 5.7576 2.5740 40 1 5.6029 4.5237 3.8455 41 1 2.9630 4.8237 -2.1291 42 1 1.2106 4.8669 -1.8202 43 1 2.3375 5.6089 -0.6593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600093153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = 9.405403 kcal Electronic energy + Delta-G solvation = -23968.972247 eV Core-core repulsion = 20628.516887 eV Total energy + Delta-G solvation = -3340.455361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48938 -40.49205 -38.19561 -35.69412 -35.27385 -33.50216 -32.37595 -31.76023 -30.75769 -28.75431 -26.98694 -26.35858 -24.21469 -23.45975 -22.88217 -21.53050 -20.76579 -19.64858 -18.54516 -17.84600 -17.48453 -16.63559 -16.61637 -16.24897 -15.85274 -15.35228 -15.02246 -14.96448 -14.76834 -14.50393 -14.24037 -14.06936 -13.92819 -13.57362 -13.44122 -13.16147 -13.06247 -12.88238 -12.84146 -12.66041 -12.29187 -12.27353 -12.19704 -11.82009 -11.67329 -11.58258 -11.05582 -10.90808 -10.67167 -10.50578 -10.26557 -9.62208 -9.27330 -8.08001 -6.24975 0.63700 1.18099 1.42037 1.42637 1.45595 1.54157 2.12910 2.42333 2.49888 3.20748 3.37460 3.73621 3.99190 3.99521 4.10807 4.13812 4.20379 4.25138 4.40172 4.42336 4.58981 4.61801 4.68406 4.76289 4.81058 4.82611 4.83915 4.91534 4.92984 5.01953 5.11808 5.27958 5.28321 5.30830 5.39583 5.51130 5.59392 5.70620 5.93662 5.98328 6.03284 6.36640 6.57102 6.77580 6.89183 7.43002 7.46627 8.96019 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025974 B = 0.004172 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.749188 B = 6709.672814 C = 7383.288127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 N -0.352 5.352 4 C 0.117 3.883 5 C -0.307 4.307 6 C 0.577 3.423 7 O -0.593 6.593 8 N -0.605 5.605 9 C 0.103 3.897 10 C -0.127 4.127 11 C -0.104 4.104 12 C 0.038 3.962 13 H -0.017 1.017 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.915 5.915 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.262 1.262 22 C 0.130 3.870 23 C 0.105 3.895 24 C -0.069 4.069 25 N -0.313 5.313 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.222 0.778 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.259 0.741 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -20.009 -2.503 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 N -0.130 5.130 4 C -0.035 4.035 5 C -0.322 4.322 6 C 0.366 3.634 7 O -0.475 6.475 8 N -0.337 5.337 9 C -0.019 4.019 10 C -0.165 4.165 11 C -0.141 4.141 12 C 0.019 3.981 13 H 0.001 0.999 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.553 5.553 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.186 1.186 22 C 0.008 3.992 23 C -0.061 4.061 24 C -0.127 4.127 25 N -0.136 5.136 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.676 -20.261 -3.783 23.689 hybrid contribution 1.511 1.766 0.744 2.440 sum -10.165 -18.495 -3.040 21.322 Atomic orbital electron populations 1.22026 0.93170 1.04270 1.02390 1.22307 0.96658 0.74757 1.06521 1.48886 1.33505 1.11256 1.19388 1.23468 0.92262 0.92439 0.95344 1.20177 1.12126 0.96131 1.03746 1.17926 0.81040 0.82472 0.81916 1.90741 1.45457 1.44346 1.66915 1.48365 1.37563 1.42729 1.04995 1.22124 0.92369 0.93141 0.94241 1.21910 0.97730 0.98733 0.98120 1.21508 0.97228 0.97846 0.97559 1.18905 0.93693 0.92571 0.92966 0.99899 1.21521 1.21753 1.19769 0.94331 0.91880 1.25916 0.98681 0.98613 0.95850 1.70134 1.40075 1.34937 1.10193 0.85551 0.79083 0.77908 0.79168 1.20131 1.21447 1.18566 1.21667 0.91283 0.90925 0.95355 1.22499 0.94074 0.95707 0.93812 1.20144 1.03615 0.89705 0.99281 1.77008 1.25249 0.96767 1.14616 0.93220 0.87811 0.92525 0.88479 0.84477 0.76213 0.89059 0.88209 0.87746 0.94103 0.91912 0.93218 0.93230 0.91257 0.93915 0.90133 0.88943 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.09 71.98 0.73 -0.86 16 2 C 0.12 1.16 7.21 86.38 0.62 1.79 16 3 N -0.35 -7.30 3.65 -346.29 -1.26 -8.57 16 4 C 0.12 2.62 9.07 84.27 0.76 3.39 16 5 C -0.31 -10.26 5.19 -20.16 -0.10 -10.37 16 6 C 0.58 25.09 7.32 86.66 0.63 25.73 16 7 O -0.59 -32.19 16.06 -4.05 -0.07 -32.26 16 8 N -0.61 -24.74 2.97 -822.76 -2.45 -27.19 16 9 C 0.10 2.90 5.51 86.36 0.48 3.38 16 10 C -0.13 -3.82 6.08 30.67 0.19 -3.63 16 11 C -0.10 -4.01 5.11 30.62 0.16 -3.85 16 12 C 0.04 1.94 2.20 -11.46 -0.03 1.92 16 13 H -0.02 -1.04 8.14 -2.38 -0.02 -1.05 16 14 C -0.54 -29.75 8.51 25.60 0.22 -29.53 16 15 H 0.06 3.35 7.75 -2.91 -0.02 3.32 16 16 C 0.01 0.51 5.35 84.66 0.45 0.96 16 17 N -0.91 -56.81 11.59 21.45 0.25 -56.56 16 18 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.13 6.55 5.47 86.36 0.47 7.03 16 23 C 0.11 3.46 7.26 43.51 0.32 3.77 16 24 C -0.07 -2.17 9.99 71.24 0.71 -1.46 16 25 N -0.31 -8.90 12.33 -46.67 -0.58 -9.48 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.14 0.37 8.06 -2.38 -0.02 0.35 16 31 H 0.22 3.01 7.41 -2.91 -0.02 2.99 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.10 2.31 4.85 -2.39 -0.01 2.30 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.07 4.23 5.32 -2.39 -0.01 4.22 16 40 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.06 2.07 7.88 -2.39 -0.02 2.05 16 Total: -1.00 -80.96 347.21 4.52 -76.44 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.99 Total: 12.60 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.61 Total: -1.75 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -4.04 Total: -101.79 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.07 Total: -32.26 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -80.96 4.52 -76.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.841 kcal (2) G-P(sol) polarization free energy of solvation -80.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds