Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47342 * 2 1 4 4 N 1.39932 * 125.75137 * 270.00069 * 3 2 1 5 5 C 1.30449 * 108.89441 * 179.73605 * 4 3 2 6 6 C 1.41287 * 108.02498 * 0.40371 * 5 4 3 7 7 C 1.47435 * 126.41893 * 179.85844 * 6 5 4 8 8 O 1.21599 * 120.00144 * 188.01756 * 7 6 5 9 9 N 1.34776 * 119.99468 * 8.01670 * 7 6 5 10 10 C 1.46507 * 119.99539 * 185.97321 * 9 7 6 11 11 C 1.50698 * 109.46830 * 270.27190 * 10 9 7 12 12 H 1.07999 * 120.00212 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99982 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00102 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00174 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47486 * 59.99988 * 15 13 11 17 17 H 1.48503 * 109.47183 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47026 * 299.99809 * 15 13 11 19 19 C 1.46502 * 120.00208 * 6.24502 * 9 7 6 20 20 C 1.53000 * 109.47092 * 271.09774 * 19 9 7 21 21 C 1.53002 * 117.49830 * 243.74690 * 20 19 9 22 22 C 1.52996 * 117.49638 * 175.08783 * 20 19 9 23 23 C 1.34255 * 125.75294 * 89.99344 * 3 2 1 24 24 C 1.50697 * 126.29602 * 359.97438 * 23 3 2 25 25 H 1.09006 * 109.46770 * 60.00244 * 1 2 3 26 26 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47605 * 300.00320 * 1 2 3 28 28 H 1.08999 * 109.47297 * 239.99279 * 2 1 3 29 29 H 1.09006 * 109.46770 * 119.99756 * 2 1 3 30 30 H 1.08005 * 125.98964 * 180.26605 * 5 4 3 31 31 H 1.08995 * 109.47085 * 30.27471 * 10 9 7 32 32 H 1.08997 * 109.46640 * 150.27363 * 10 9 7 33 33 H 0.97000 * 119.99987 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.46992 * 31.09942 * 19 9 7 35 35 H 1.09001 * 109.46760 * 151.09882 * 19 9 7 36 36 H 1.08997 * 115.54910 * 29.41548 * 20 19 9 37 37 H 1.08999 * 117.49978 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49576 * 145.01972 * 21 20 19 39 39 H 1.09001 * 117.49823 * 214.97614 * 22 20 19 40 40 H 1.08999 * 117.50122 * 0.02562 * 22 20 19 41 41 H 1.08996 * 109.47291 * 270.00148 * 24 23 3 42 42 H 1.09008 * 109.46832 * 29.99923 * 24 23 3 43 43 H 1.09000 * 109.47214 * 149.99868 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1520 -1.1356 5 6 2.7017 3.3309 -0.7574 6 6 2.7166 3.3562 0.6552 7 6 3.1174 4.4916 1.5061 8 8 3.2259 4.3421 2.7080 9 7 3.3637 5.6951 0.9517 10 6 3.8875 6.7876 1.7755 11 6 2.7401 7.5679 2.3634 12 1 1.7226 7.2787 2.1457 13 6 2.9893 8.6509 3.1794 14 7 4.2284 9.0034 3.4441 15 14 1.5671 9.6177 3.9088 16 1 0.7370 8.7185 4.7499 17 1 2.0980 10.7259 4.7427 18 1 0.7358 10.1777 2.8131 19 6 3.1021 5.9126 -0.4732 20 6 4.3471 5.5438 -1.2825 21 6 5.0395 6.6630 -2.0628 22 6 4.2382 5.5925 -2.8078 23 6 2.2798 2.1208 1.0895 24 6 2.1243 1.6831 2.5232 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.9835 4.1443 -1.4097 31 1 4.4971 6.3761 2.5798 32 1 4.4973 7.4475 1.1585 33 1 4.4038 9.7657 4.0179 34 1 2.2659 5.2886 -0.7884 35 1 2.8567 6.9612 -0.6416 36 1 4.9780 4.7688 -0.8474 37 1 4.6083 7.6621 -1.9993 38 1 6.1260 6.6240 -2.1414 39 1 4.7978 4.8498 -3.3762 40 1 3.2797 5.8877 -3.2348 41 1 1.1180 1.9205 2.8684 42 1 2.2887 0.6079 2.5946 43 1 2.8536 2.2043 3.1433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601036733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = 80.998313 kcal Electronic energy + Delta-G solvation = -23938.602393 eV Core-core repulsion = 20601.251534 eV Total energy + Delta-G solvation = -3337.350859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33470 -38.74583 -37.19321 -34.65060 -34.27930 -32.46861 -31.90797 -29.84844 -27.89200 -27.14171 -25.91761 -24.14904 -22.87742 -22.32980 -21.24406 -20.73892 -19.67938 -18.36200 -16.85668 -16.39301 -15.88685 -15.56398 -15.31609 -14.91706 -14.42073 -14.32348 -14.16189 -13.87603 -13.27826 -13.01142 -12.92937 -12.66627 -12.47815 -12.37651 -12.05656 -11.93910 -11.56339 -11.48149 -11.37671 -11.25788 -11.08881 -10.82876 -10.62268 -10.53275 -10.21449 -10.06413 -9.75685 -9.55110 -9.17893 -8.78704 -8.35601 -8.29310 -7.53499 -5.96490 -4.00325 1.81153 2.46613 2.55480 3.36767 3.40730 3.44333 3.83719 4.07559 4.24056 4.41679 4.52783 4.71812 4.76225 4.88554 4.92641 5.05712 5.12249 5.19235 5.19926 5.32144 5.37330 5.48232 5.58491 5.68535 5.70097 5.76538 5.78612 5.79694 5.89847 6.05498 6.08152 6.12337 6.30714 6.31619 6.50891 6.69836 7.05386 7.22298 7.53968 7.66974 7.79559 8.00939 8.32915 8.56639 8.99871 9.25911 9.64416 11.11392 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.005202 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.858839 B = 5381.256970 C = 6694.008091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.368 5.368 4 N -0.309 5.309 5 C 0.055 3.945 6 C -0.284 4.284 7 C 0.583 3.417 8 O -0.545 6.545 9 N -0.588 5.588 10 C 0.251 3.749 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.129 3.871 20 C -0.177 4.177 21 C -0.168 4.168 22 C -0.186 4.186 23 C 0.145 3.855 24 C -0.098 4.098 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.215 0.785 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -15.311 -10.659 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.149 5.149 4 N -0.129 5.129 5 C -0.130 4.130 6 C -0.299 4.299 7 C 0.371 3.629 8 O -0.424 6.424 9 N -0.318 5.318 10 C 0.132 3.868 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.536 5.536 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.004 3.996 20 C -0.196 4.196 21 C -0.205 4.205 22 C -0.223 4.223 23 C 0.014 3.986 24 C -0.156 4.156 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.231 0.769 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.798 -16.123 -10.910 19.835 hybrid contribution -0.549 1.127 0.949 1.572 sum -4.347 -14.996 -9.961 18.521 Atomic orbital electron populations 1.22182 0.94239 1.02941 1.03468 1.21667 0.95310 0.78191 1.04333 1.48510 1.50690 1.12033 1.03627 1.77125 1.23492 1.04630 1.07617 1.25456 0.96844 0.95678 0.95070 1.20378 1.19165 0.96587 0.93722 1.17155 0.77489 0.81675 0.86573 1.90683 1.53598 1.83632 1.14506 1.47917 1.63735 1.11799 1.08370 1.19249 0.94469 0.82946 0.90140 1.21421 0.93163 1.12083 1.29408 0.92555 1.24908 0.95684 0.97279 0.96170 1.69928 1.18428 1.27570 1.37628 0.86597 0.82477 0.79369 0.79181 1.20250 1.21269 1.20342 1.21475 0.94168 1.02415 0.81525 1.23023 1.01485 1.02438 0.92704 1.23005 0.99074 0.94925 1.03488 1.23034 1.02563 1.02938 0.93810 1.21467 0.95331 0.90964 0.90863 1.20675 1.05074 1.00946 0.88943 0.91550 0.90561 0.91839 0.88693 0.88955 0.76912 0.94050 0.94845 0.92793 0.90152 0.89708 0.87488 0.88297 0.89037 0.88836 0.88550 0.89955 0.91728 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.13 1.14 6.93 -4.04 -0.03 1.11 16 3 N -0.37 -5.08 3.58 -56.60 -0.20 -5.28 16 4 N -0.31 -4.81 12.50 30.86 0.39 -4.42 16 5 C 0.06 0.89 9.20 -16.98 -0.16 0.74 16 6 C -0.28 -5.20 5.92 -105.06 -0.62 -5.83 16 7 C 0.58 12.97 7.64 -12.52 -0.10 12.88 16 8 O -0.55 -13.89 14.47 5.28 0.08 -13.82 16 9 N -0.59 -12.93 2.46 -176.33 -0.43 -13.36 16 10 C 0.25 6.64 5.11 -5.19 -0.03 6.61 16 11 C -0.52 -14.96 9.38 -34.44 -0.32 -15.28 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 15 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.13 2.21 5.15 -4.04 -0.02 2.19 16 20 C -0.18 -2.57 3.91 -90.62 -0.35 -2.93 16 21 C -0.17 -2.20 10.18 -26.69 -0.27 -2.47 16 22 C -0.19 -2.12 9.47 -26.70 -0.25 -2.37 16 23 C 0.14 2.29 7.00 -81.60 -0.57 1.72 16 24 C -0.10 -1.31 9.66 36.00 0.35 -0.97 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.64 7.02 -51.93 -0.36 0.28 16 30 H 0.22 3.08 2.60 -52.48 -0.14 2.94 16 31 H 0.04 1.23 7.52 -51.93 -0.39 0.84 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 1.27 4.94 -51.93 -0.26 1.02 16 35 H 0.08 1.49 7.80 -51.93 -0.40 1.08 16 36 H 0.11 1.68 7.93 -51.93 -0.41 1.27 16 37 H 0.10 1.32 8.03 -51.93 -0.42 0.90 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.63 7.05 -51.92 -0.37 0.26 16 43 H 0.11 1.78 6.37 -51.93 -0.33 1.45 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -34.17 350.98 -7.69 -41.86 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.42 Total: 2.60 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.09 Total: -3.90 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.49 Total: -49.11 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.17 -7.69 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.854 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds