Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47342 * 2 1 4 4 N 1.39932 * 125.75137 * 270.00069 * 3 2 1 5 5 C 1.30449 * 108.89441 * 179.73605 * 4 3 2 6 6 C 1.41287 * 108.02498 * 0.40371 * 5 4 3 7 7 C 1.47435 * 126.41893 * 179.85844 * 6 5 4 8 8 O 1.21599 * 120.00144 * 188.01756 * 7 6 5 9 9 N 1.34776 * 119.99468 * 8.01670 * 7 6 5 10 10 C 1.46507 * 119.99539 * 185.97321 * 9 7 6 11 11 C 1.50698 * 109.46830 * 270.27190 * 10 9 7 12 12 H 1.07999 * 120.00212 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99982 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00102 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00174 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47486 * 59.99988 * 15 13 11 17 17 H 1.48503 * 109.47183 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47026 * 299.99809 * 15 13 11 19 19 C 1.46502 * 120.00208 * 6.24502 * 9 7 6 20 20 C 1.53000 * 109.47092 * 271.09774 * 19 9 7 21 21 C 1.53002 * 117.49830 * 243.74690 * 20 19 9 22 22 C 1.52996 * 117.49638 * 175.08783 * 20 19 9 23 23 C 1.34255 * 125.75294 * 89.99344 * 3 2 1 24 24 C 1.50697 * 126.29602 * 359.97438 * 23 3 2 25 25 H 1.09006 * 109.46770 * 60.00244 * 1 2 3 26 26 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47605 * 300.00320 * 1 2 3 28 28 H 1.08999 * 109.47297 * 239.99279 * 2 1 3 29 29 H 1.09006 * 109.46770 * 119.99756 * 2 1 3 30 30 H 1.08005 * 125.98964 * 180.26605 * 5 4 3 31 31 H 1.08995 * 109.47085 * 30.27471 * 10 9 7 32 32 H 1.08997 * 109.46640 * 150.27363 * 10 9 7 33 33 H 0.97000 * 119.99987 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.46992 * 31.09942 * 19 9 7 35 35 H 1.09001 * 109.46760 * 151.09882 * 19 9 7 36 36 H 1.08997 * 115.54910 * 29.41548 * 20 19 9 37 37 H 1.08999 * 117.49978 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49576 * 145.01972 * 21 20 19 39 39 H 1.09001 * 117.49823 * 214.97614 * 22 20 19 40 40 H 1.08999 * 117.50122 * 0.02562 * 22 20 19 41 41 H 1.08996 * 109.47291 * 270.00148 * 24 23 3 42 42 H 1.09008 * 109.46832 * 29.99923 * 24 23 3 43 43 H 1.09000 * 109.47214 * 149.99868 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1520 -1.1356 5 6 2.7017 3.3309 -0.7574 6 6 2.7166 3.3562 0.6552 7 6 3.1174 4.4916 1.5061 8 8 3.2259 4.3421 2.7080 9 7 3.3637 5.6951 0.9517 10 6 3.8875 6.7876 1.7755 11 6 2.7401 7.5679 2.3634 12 1 1.7226 7.2787 2.1457 13 6 2.9893 8.6509 3.1794 14 7 4.2284 9.0034 3.4441 15 14 1.5671 9.6177 3.9088 16 1 0.7370 8.7185 4.7499 17 1 2.0980 10.7259 4.7427 18 1 0.7358 10.1777 2.8131 19 6 3.1021 5.9126 -0.4732 20 6 4.3471 5.5438 -1.2825 21 6 5.0395 6.6630 -2.0628 22 6 4.2382 5.5925 -2.8078 23 6 2.2798 2.1208 1.0895 24 6 2.1243 1.6831 2.5232 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.9835 4.1443 -1.4097 31 1 4.4971 6.3761 2.5798 32 1 4.4973 7.4475 1.1585 33 1 4.4038 9.7657 4.0179 34 1 2.2659 5.2886 -0.7884 35 1 2.8567 6.9612 -0.6416 36 1 4.9780 4.7688 -0.8474 37 1 4.6083 7.6621 -1.9993 38 1 6.1260 6.6240 -2.1414 39 1 4.7978 4.8498 -3.3762 40 1 3.2797 5.8877 -3.2348 41 1 1.1180 1.9205 2.8684 42 1 2.2887 0.6079 2.5946 43 1 2.8536 2.2043 3.1433 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601036733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = 59.730651 kcal Electronic energy + Delta-G solvation = -23939.524628 eV Core-core repulsion = 20601.251534 eV Total energy + Delta-G solvation = -3338.273094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.58149 -40.29895 -38.54915 -36.07383 -35.58424 -34.51331 -33.07791 -31.13169 -29.51211 -28.44836 -27.54596 -25.41979 -24.46057 -23.35196 -22.64693 -21.96948 -20.86572 -19.82867 -18.59178 -18.17610 -17.19608 -16.98255 -16.54512 -16.38282 -16.12361 -15.69224 -15.33829 -14.99303 -14.71050 -14.26953 -14.23001 -14.11972 -13.89319 -13.41906 -13.36577 -13.25288 -12.99989 -12.85197 -12.68915 -12.57770 -12.50267 -12.26733 -12.21717 -12.15123 -11.78436 -11.71056 -11.27625 -10.90492 -10.60266 -10.57342 -10.27103 -9.68082 -9.30387 -8.17717 -6.32172 0.54536 1.20709 1.37938 1.42108 1.43528 1.49710 2.30458 2.47149 2.56976 2.94370 3.11061 3.47326 3.62745 3.79528 3.94847 3.99739 4.07457 4.08608 4.10410 4.23179 4.35784 4.44033 4.45334 4.60922 4.63404 4.75191 4.80172 4.83610 4.86976 4.95679 5.08215 5.09737 5.15575 5.22566 5.26623 5.29219 5.33443 5.48158 5.62320 5.91103 5.97550 6.11764 6.56569 6.74718 6.85405 7.32722 7.55965 8.88813 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.005202 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.858839 B = 5381.256970 C = 6694.008091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.355 5.355 4 N -0.314 5.314 5 C 0.061 3.939 6 C -0.321 4.321 7 C 0.576 3.424 8 O -0.593 6.593 9 N -0.595 5.595 10 C 0.270 3.730 11 C -0.540 4.540 12 H 0.049 0.951 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.965 3.035 16 H -0.278 1.278 17 H -0.277 1.277 18 H -0.262 1.262 19 C 0.130 3.870 20 C -0.196 4.196 21 C -0.175 4.175 22 C -0.149 4.149 23 C 0.152 3.848 24 C -0.095 4.095 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.226 0.774 31 H -0.004 1.004 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -17.005 -12.365 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.135 5.135 4 N -0.133 5.133 5 C -0.125 4.125 6 C -0.335 4.335 7 C 0.366 3.634 8 O -0.476 6.476 9 N -0.324 5.324 10 C 0.149 3.851 11 C -0.579 4.579 12 H 0.067 0.933 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.789 3.211 16 H -0.204 1.204 17 H -0.202 1.202 18 H -0.187 1.187 19 C 0.007 3.993 20 C -0.216 4.216 21 C -0.212 4.212 22 C -0.186 4.186 23 C 0.018 3.982 24 C -0.153 4.153 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.242 0.758 31 H 0.015 0.985 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.448 -17.848 -12.689 22.566 hybrid contribution -0.031 1.530 1.464 2.118 sum -5.479 -16.317 -11.224 20.549 Atomic orbital electron populations 1.22159 0.93149 1.04675 1.02278 1.22223 0.96182 0.75677 1.06564 1.48911 1.49015 1.13182 1.02411 1.77083 1.23420 1.04424 1.08421 1.25518 0.96581 0.96317 0.94055 1.20138 1.22492 0.96450 0.94459 1.17755 0.76596 0.82487 0.86546 1.90639 1.55777 1.84499 1.16635 1.47871 1.63536 1.10888 1.10071 1.18684 0.93499 0.83597 0.89324 1.21651 0.93193 1.12798 1.30210 0.93275 1.25802 0.98512 0.98221 0.96309 1.70048 1.20503 1.28098 1.38076 0.85511 0.79043 0.77853 0.78649 1.20409 1.20187 1.18652 1.21656 0.96204 1.02339 0.79097 1.22752 1.00671 1.03366 0.94803 1.23078 0.99746 0.94732 1.03688 1.23166 1.03030 1.01544 0.90901 1.21736 0.93819 0.90369 0.92289 1.20692 1.04497 1.03224 0.86924 0.93101 0.87363 0.92634 0.87119 0.86155 0.75829 0.98544 0.95760 0.92443 0.88584 0.90482 0.88897 0.88837 0.88380 0.86778 0.86728 0.89130 0.87430 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.24 71.98 0.74 -1.32 16 2 C 0.11 1.62 6.93 86.38 0.60 2.22 16 3 N -0.36 -9.00 3.58 -333.00 -1.19 -10.20 16 4 N -0.31 -9.16 12.50 -56.27 -0.70 -9.86 16 5 C 0.06 1.91 9.20 85.65 0.79 2.70 16 6 C -0.32 -11.91 5.92 -20.15 -0.12 -12.03 16 7 C 0.58 27.00 7.64 86.67 0.66 27.67 16 8 O -0.59 -32.29 14.47 -4.03 -0.06 -32.35 16 9 N -0.59 -27.59 2.46 -830.04 -2.04 -29.63 16 10 C 0.27 15.21 5.11 85.63 0.44 15.65 16 11 C -0.54 -32.21 9.38 25.60 0.24 -31.97 16 12 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 13 C 0.01 0.62 5.46 84.65 0.46 1.08 16 14 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 15 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 C 0.13 4.57 5.15 86.38 0.44 5.02 16 20 C -0.20 -5.70 3.91 -10.79 -0.04 -5.74 16 21 C -0.18 -4.48 10.18 30.62 0.31 -4.17 16 22 C -0.15 -3.04 9.47 30.62 0.29 -2.75 16 23 C 0.15 4.65 7.00 42.14 0.30 4.95 16 24 C -0.10 -2.46 9.66 71.24 0.69 -1.77 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.12 1.11 7.02 -2.38 -0.02 1.09 16 30 H 0.23 6.23 2.60 -2.91 -0.01 6.22 16 31 H 0.00 -0.23 7.52 -2.39 -0.02 -0.25 16 32 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 33 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.10 3.04 4.94 -2.39 -0.01 3.03 16 35 H 0.08 2.78 7.80 -2.39 -0.02 2.76 16 36 H 0.09 2.99 7.93 -2.39 -0.02 2.97 16 37 H 0.09 2.48 8.03 -2.39 -0.02 2.47 16 38 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.11 1.78 7.05 -2.38 -0.02 1.76 16 43 H 0.08 2.63 6.37 -2.39 -0.02 2.61 16 Total: -1.00 -78.50 350.98 5.12 -73.38 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.01 Total: 17.96 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.79 Total: -0.48 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -3.65 Total: -106.44 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.06 Total: -32.35 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -78.50 5.12 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.110 kcal (2) G-P(sol) polarization free energy of solvation -78.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds