Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47186 * 2 1 4 4 C 1.34253 * 125.75538 * 125.00285 * 3 2 1 5 5 C 1.38044 * 107.41992 * 180.26661 * 4 3 2 6 6 C 1.47427 * 126.41843 * 179.72119 * 5 4 3 7 7 O 1.21606 * 120.00142 * 142.74465 * 6 5 4 8 8 N 1.34773 * 119.99896 * 322.74795 * 6 5 4 9 9 C 1.46503 * 119.99914 * 4.54713 * 8 6 5 10 10 C 1.46500 * 120.00068 * 184.54431 * 8 6 5 11 11 H 1.08994 * 109.47296 * 0.02562 * 10 8 6 12 12 C 1.53003 * 109.46952 * 120.00159 * 10 8 6 13 13 C 1.50697 * 109.47512 * 239.99753 * 10 8 6 14 14 H 1.08003 * 119.99580 * 0.02562 * 13 10 8 15 15 C 1.37874 * 120.00632 * 180.02562 * 13 10 8 16 16 N 1.31513 * 120.00556 * 180.02562 * 15 13 10 17 17 Si 1.86806 * 119.99485 * 0.02562 * 15 13 10 18 18 H 1.48497 * 109.47199 * 89.99890 * 17 15 13 19 19 H 1.48500 * 109.46788 * 210.00115 * 17 15 13 20 20 H 1.48496 * 109.46915 * 329.99906 * 17 15 13 21 21 C 1.41296 * 107.16785 * 359.58267 * 5 4 3 22 22 C 1.50699 * 125.98914 * 180.16813 * 21 5 4 23 23 C 1.52999 * 117.50115 * 188.90144 * 22 21 5 24 24 C 1.52999 * 117.50177 * 120.27726 * 22 21 5 25 25 N 1.30447 * 108.02236 * 0.41994 * 21 5 4 26 26 H 1.09000 * 109.47055 * 59.99612 * 1 2 3 27 27 H 1.09003 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46788 * 300.00013 * 1 2 3 29 29 H 1.09003 * 109.46788 * 239.99987 * 2 1 3 30 30 H 1.09000 * 109.47055 * 120.00388 * 2 1 3 31 31 H 1.07997 * 126.29019 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47497 * 84.77888 * 9 8 6 33 33 H 1.09005 * 109.46855 * 204.78402 * 9 8 6 34 34 H 1.08998 * 109.46976 * 324.77448 * 9 8 6 35 35 H 1.09002 * 109.46923 * 299.99789 * 12 10 8 36 36 H 1.08994 * 109.47213 * 59.99835 * 12 10 8 37 37 H 1.08997 * 109.47004 * 180.02562 * 12 10 8 38 38 H 0.96995 * 119.99893 * 180.02562 * 16 15 13 39 39 H 1.09003 * 115.54677 * 334.60473 * 22 21 5 40 40 H 1.09007 * 117.49514 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50415 * 145.01656 * 23 22 21 42 42 H 1.09002 * 117.49597 * 214.98008 * 24 22 21 43 43 H 1.08996 * 117.49613 * 359.96908 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9125 0.8924 5 6 3.0663 3.2326 0.5402 6 6 3.9216 4.2072 1.2417 7 8 4.5585 5.0254 0.6063 8 7 3.9976 4.1914 2.5872 9 6 3.3102 3.1445 3.3475 10 6 4.7677 5.2209 3.2896 11 1 5.2032 5.9074 2.5636 12 6 3.8436 5.9948 4.2320 13 6 5.8672 4.5689 4.0877 14 1 5.9812 3.4950 4.0728 15 6 6.7276 5.3432 4.8368 16 7 7.6874 4.7742 5.5329 17 14 6.5298 7.2005 4.8630 18 1 5.6168 7.5856 5.9690 19 1 7.8555 7.8365 5.0712 20 1 5.9600 7.6559 3.5695 21 6 2.2975 3.4739 -0.6204 22 6 2.2057 4.7803 -1.3660 23 6 1.1574 4.8886 -2.4752 24 6 2.6418 4.7890 -2.8325 25 7 1.6768 2.3692 -0.9303 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3134 1.4023 1.7342 32 1 3.9439 2.2595 3.4021 33 1 3.1014 3.5048 4.3548 34 1 2.3735 2.8907 2.8511 35 1 3.0484 6.4665 3.6548 36 1 3.4077 5.3086 4.9580 37 1 4.4165 6.7611 4.7542 38 1 8.2924 5.3190 6.0602 39 1 2.4081 5.6739 -0.7755 40 1 0.5344 4.0146 -2.6659 41 1 0.6698 5.8534 -2.6146 42 1 3.1308 5.6883 -3.2068 43 1 2.9955 3.8498 -3.2579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = 79.090052 kcal Electronic energy + Delta-G solvation = -23812.565042 eV Core-core repulsion = 20475.131434 eV Total energy + Delta-G solvation = -3337.433608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38422 -38.68484 -37.11948 -35.37209 -34.28251 -32.78782 -30.98120 -30.08052 -29.04774 -26.32933 -25.10225 -24.73455 -23.28157 -22.29565 -21.85929 -20.80145 -19.21688 -18.44655 -17.03748 -16.67321 -15.91447 -15.85644 -15.44064 -15.15503 -14.75563 -14.59005 -14.17083 -13.70404 -13.36279 -13.12137 -12.81342 -12.61475 -12.44974 -12.22113 -12.14658 -11.88298 -11.77268 -11.62621 -11.50725 -11.45883 -11.11958 -10.83906 -10.71079 -10.62318 -10.22414 -10.10482 -9.62935 -9.30500 -9.10084 -9.00031 -8.60943 -8.37694 -7.64637 -6.11895 -4.11945 1.73849 2.33053 2.37727 3.25825 3.39605 3.42745 3.69955 3.94553 4.10835 4.27250 4.38211 4.56979 4.66179 4.75419 4.91989 4.96285 5.08671 5.16462 5.21323 5.28746 5.46358 5.48142 5.67251 5.70295 5.71893 5.79668 5.86244 5.91967 5.98005 6.18847 6.20395 6.27916 6.29081 6.35882 6.51667 6.58799 6.87939 6.89864 7.19340 7.41846 7.67660 7.71188 8.27103 8.52022 8.88697 9.04344 9.49826 11.00960 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.004669 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.021555 B = 5994.960147 C = 6977.789628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.364 5.364 4 C 0.090 3.910 5 C -0.264 4.264 6 C 0.583 3.417 7 O -0.547 6.547 8 N -0.584 5.584 9 C 0.086 3.914 10 C 0.231 3.769 11 H 0.064 0.936 12 C -0.161 4.161 13 C -0.525 4.525 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.897 5.897 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.262 1.262 21 C 0.154 3.846 22 C -0.074 4.074 23 C -0.170 4.170 24 C -0.156 4.156 25 N -0.301 5.301 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.186 0.814 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.720 -7.965 -10.286 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.144 5.144 4 C -0.059 4.059 5 C -0.279 4.279 6 C 0.370 3.630 7 O -0.425 6.425 8 N -0.315 5.315 9 C -0.058 4.058 10 C 0.129 3.871 11 H 0.081 0.919 12 C -0.219 4.219 13 C -0.563 4.563 14 H 0.096 0.904 15 C -0.128 4.128 16 N -0.534 5.534 17 Si 0.713 3.287 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.187 1.187 21 C -0.013 4.013 22 C -0.094 4.094 23 C -0.208 4.208 24 C -0.194 4.194 25 N -0.122 5.122 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.202 0.798 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.078 -8.246 -11.265 21.294 hybrid contribution 0.671 1.034 1.057 1.624 sum -15.407 -7.212 -10.209 19.840 Atomic orbital electron populations 1.22047 0.93649 1.02785 1.03727 1.21744 0.96198 0.77256 1.04000 1.48395 1.34912 1.10167 1.20955 1.23337 0.93353 0.94084 0.95153 1.20340 1.10496 0.94913 1.02140 1.17257 0.80688 0.83227 0.81848 1.90719 1.45252 1.40476 1.66086 1.47703 1.50061 1.28922 1.04802 1.21740 0.95239 0.91349 0.97505 1.19279 0.89318 0.86898 0.91631 0.91865 1.22467 0.99342 0.99940 1.00176 1.21161 1.11954 0.95798 1.27371 0.90435 1.24861 0.94695 0.98460 0.94736 1.69873 1.17730 1.35855 1.29985 0.86919 0.76480 0.86185 0.79132 1.20459 1.22193 1.18724 1.21297 0.93689 0.93271 0.93014 1.20291 1.05435 0.93293 0.90424 1.22994 0.92207 1.03264 1.02289 1.22917 0.97134 1.03472 0.95884 1.76950 1.24892 0.96694 1.13709 0.91080 0.90728 0.91930 0.89686 0.88364 0.79766 0.93300 0.90607 0.92671 0.94770 0.92595 0.93168 0.92497 0.85496 0.88264 0.88511 0.88144 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.09 37.16 0.37 -0.78 16 2 C 0.13 1.01 7.21 -4.04 -0.03 0.98 16 3 N -0.36 -4.55 3.65 -60.81 -0.22 -4.78 16 4 C 0.09 1.24 9.16 -16.56 -0.15 1.09 16 5 C -0.26 -4.61 5.39 -105.06 -0.57 -5.17 16 6 C 0.58 12.39 7.48 -12.52 -0.09 12.30 16 7 O -0.55 -13.50 15.69 5.27 0.08 -13.42 16 8 N -0.58 -12.29 2.75 -176.53 -0.49 -12.78 16 9 C 0.09 1.40 8.24 59.85 0.49 1.89 16 10 C 0.23 5.62 2.22 -69.08 -0.15 5.47 16 11 H 0.06 1.72 5.97 -51.93 -0.31 1.41 16 12 C -0.16 -3.49 8.66 37.16 0.32 -3.17 16 13 C -0.52 -14.53 8.95 -34.44 -0.31 -14.84 16 14 H 0.08 2.30 7.89 -52.48 -0.41 1.88 16 15 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 16 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 17 Si 0.88 21.93 24.37 -169.99 -4.14 17.79 16 18 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 21 C 0.15 2.52 6.79 -82.02 -0.56 1.97 16 22 C -0.07 -1.12 5.68 -91.77 -0.52 -1.64 16 23 C -0.17 -2.01 10.14 -26.73 -0.27 -2.28 16 24 C -0.16 -2.00 10.23 -26.73 -0.27 -2.28 16 25 N -0.30 -4.47 11.91 33.90 0.40 -4.06 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.19 2.07 6.25 -52.49 -0.33 1.74 16 32 H 0.05 0.75 7.32 -51.93 -0.38 0.37 16 33 H 0.08 1.24 6.44 -51.93 -0.33 0.91 16 34 H 0.05 0.76 5.89 -51.93 -0.31 0.45 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.12 6.66 -51.93 -0.35 0.77 16 37 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.13 2.06 7.86 -51.93 -0.41 1.65 16 40 H 0.10 1.18 7.90 -51.92 -0.41 0.77 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -34.44 345.47 -6.60 -41.04 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.39 Total: 1.67 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.83 Total: -4.42 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.47 Total: -47.86 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.44 -6.60 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.131 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds