Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47186 * 2 1 4 4 C 1.34253 * 125.75538 * 125.00285 * 3 2 1 5 5 C 1.38044 * 107.41992 * 180.26661 * 4 3 2 6 6 C 1.47427 * 126.41843 * 179.72119 * 5 4 3 7 7 O 1.21606 * 120.00142 * 142.74465 * 6 5 4 8 8 N 1.34773 * 119.99896 * 322.74795 * 6 5 4 9 9 C 1.46503 * 119.99914 * 4.54713 * 8 6 5 10 10 C 1.46500 * 120.00068 * 184.54431 * 8 6 5 11 11 H 1.08994 * 109.47296 * 0.02562 * 10 8 6 12 12 C 1.53003 * 109.46952 * 120.00159 * 10 8 6 13 13 C 1.50697 * 109.47512 * 239.99753 * 10 8 6 14 14 H 1.08003 * 119.99580 * 0.02562 * 13 10 8 15 15 C 1.37874 * 120.00632 * 180.02562 * 13 10 8 16 16 N 1.31513 * 120.00556 * 180.02562 * 15 13 10 17 17 Si 1.86806 * 119.99485 * 0.02562 * 15 13 10 18 18 H 1.48497 * 109.47199 * 89.99890 * 17 15 13 19 19 H 1.48500 * 109.46788 * 210.00115 * 17 15 13 20 20 H 1.48496 * 109.46915 * 329.99906 * 17 15 13 21 21 C 1.41296 * 107.16785 * 359.58267 * 5 4 3 22 22 C 1.50699 * 125.98914 * 180.16813 * 21 5 4 23 23 C 1.52999 * 117.50115 * 188.90144 * 22 21 5 24 24 C 1.52999 * 117.50177 * 120.27726 * 22 21 5 25 25 N 1.30447 * 108.02236 * 0.41994 * 21 5 4 26 26 H 1.09000 * 109.47055 * 59.99612 * 1 2 3 27 27 H 1.09003 * 109.46882 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46788 * 300.00013 * 1 2 3 29 29 H 1.09003 * 109.46788 * 239.99987 * 2 1 3 30 30 H 1.09000 * 109.47055 * 120.00388 * 2 1 3 31 31 H 1.07997 * 126.29019 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47497 * 84.77888 * 9 8 6 33 33 H 1.09005 * 109.46855 * 204.78402 * 9 8 6 34 34 H 1.08998 * 109.46976 * 324.77448 * 9 8 6 35 35 H 1.09002 * 109.46923 * 299.99789 * 12 10 8 36 36 H 1.08994 * 109.47213 * 59.99835 * 12 10 8 37 37 H 1.08997 * 109.47004 * 180.02562 * 12 10 8 38 38 H 0.96995 * 119.99893 * 180.02562 * 16 15 13 39 39 H 1.09003 * 115.54677 * 334.60473 * 22 21 5 40 40 H 1.09007 * 117.49514 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50415 * 145.01656 * 23 22 21 42 42 H 1.09002 * 117.49597 * 214.98008 * 24 22 21 43 43 H 1.08996 * 117.49613 * 359.96908 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9125 0.8924 5 6 3.0663 3.2326 0.5402 6 6 3.9216 4.2072 1.2417 7 8 4.5585 5.0254 0.6063 8 7 3.9976 4.1914 2.5872 9 6 3.3102 3.1445 3.3475 10 6 4.7677 5.2209 3.2896 11 1 5.2032 5.9074 2.5636 12 6 3.8436 5.9948 4.2320 13 6 5.8672 4.5689 4.0877 14 1 5.9812 3.4950 4.0728 15 6 6.7276 5.3432 4.8368 16 7 7.6874 4.7742 5.5329 17 14 6.5298 7.2005 4.8630 18 1 5.6168 7.5856 5.9690 19 1 7.8555 7.8365 5.0712 20 1 5.9600 7.6559 3.5695 21 6 2.2975 3.4739 -0.6204 22 6 2.2057 4.7803 -1.3660 23 6 1.1574 4.8886 -2.4752 24 6 2.6418 4.7890 -2.8325 25 7 1.6768 2.3692 -0.9303 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3134 1.4023 1.7342 32 1 3.9439 2.2595 3.4021 33 1 3.1014 3.5048 4.3548 34 1 2.3735 2.8907 2.8511 35 1 3.0484 6.4665 3.6548 36 1 3.4077 5.3086 4.9580 37 1 4.4165 6.7611 4.7542 38 1 8.2924 5.3190 6.0602 39 1 2.4081 5.6739 -0.7755 40 1 0.5344 4.0146 -2.6659 41 1 0.6698 5.8534 -2.6146 42 1 3.1308 5.6883 -3.2068 43 1 2.9955 3.8498 -3.2579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601037548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = 56.206232 kcal Electronic energy + Delta-G solvation = -23813.557359 eV Core-core repulsion = 20475.131434 eV Total energy + Delta-G solvation = -3338.425924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.53013 -40.29839 -38.15582 -37.13158 -35.15617 -34.71822 -32.71200 -31.15227 -30.28694 -27.78804 -27.12967 -25.62618 -24.70776 -23.27570 -22.84314 -22.23895 -20.61937 -19.74206 -18.89386 -18.00880 -17.59737 -17.09880 -16.88584 -16.31777 -16.03332 -15.82387 -15.47844 -14.96900 -14.78683 -14.65787 -14.28715 -14.09401 -13.76240 -13.53371 -13.43205 -13.07093 -13.04738 -12.97199 -12.79713 -12.51816 -12.43514 -12.40640 -12.03498 -11.83710 -11.69415 -11.57243 -11.34402 -11.27381 -10.77695 -10.70471 -10.14197 -9.61112 -9.30703 -8.32810 -6.36531 0.60848 1.09989 1.27442 1.37577 1.41440 1.46331 2.20519 2.30024 2.41861 3.02464 3.03285 3.30104 3.56345 3.86925 3.95201 4.01642 4.10483 4.13261 4.21657 4.38648 4.40354 4.48711 4.51546 4.59774 4.61626 4.67165 4.74595 4.75505 4.83049 4.89459 4.93781 4.96167 5.09210 5.15913 5.24524 5.25714 5.34230 5.46303 5.51810 5.77046 5.94752 6.24332 6.56852 6.64652 6.79175 7.25406 7.44745 8.83110 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.004669 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.021555 B = 5994.960147 C = 6977.789628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.352 5.352 4 C 0.112 3.888 5 C -0.303 4.303 6 C 0.579 3.421 7 O -0.595 6.595 8 N -0.592 5.592 9 C 0.083 3.917 10 C 0.233 3.767 11 H 0.030 0.970 12 C -0.154 4.154 13 C -0.522 4.522 14 H 0.047 0.953 15 C 0.024 3.976 16 N -0.939 5.939 17 Si 0.938 3.062 18 H -0.253 1.253 19 H -0.296 1.296 20 H -0.264 1.264 21 C 0.144 3.856 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.154 4.154 25 N -0.307 5.307 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.213 0.787 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.268 0.732 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 -9.125 -10.468 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.003 4.003 3 N -0.130 5.130 4 C -0.040 4.040 5 C -0.318 4.318 6 C 0.369 3.631 7 O -0.478 6.478 8 N -0.321 5.321 9 C -0.059 4.059 10 C 0.129 3.871 11 H 0.048 0.952 12 C -0.211 4.211 13 C -0.561 4.561 14 H 0.066 0.934 15 C -0.174 4.174 16 N -0.579 5.579 17 Si 0.766 3.234 18 H -0.178 1.178 19 H -0.224 1.224 20 H -0.189 1.189 21 C -0.022 4.022 22 C -0.126 4.126 23 C -0.178 4.178 24 C -0.193 4.193 25 N -0.129 5.129 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.150 0.850 31 H 0.229 0.771 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.539 -9.454 -11.449 23.752 hybrid contribution 1.401 1.203 1.054 2.126 sum -17.139 -8.252 -10.395 21.677 Atomic orbital electron populations 1.22014 0.92876 1.04279 1.02459 1.22294 0.96859 0.74820 1.06342 1.48854 1.33502 1.11212 1.19480 1.23603 0.92285 0.92791 0.95351 1.20104 1.12253 0.95862 1.03603 1.17802 0.80371 0.83259 0.81717 1.90671 1.47338 1.42720 1.67042 1.47747 1.49888 1.29310 1.05181 1.21969 0.96336 0.90322 0.97309 1.18963 0.89684 0.87414 0.90994 0.95220 1.22320 0.99094 0.99764 0.99950 1.21350 1.13027 0.94556 1.27142 0.93440 1.25603 0.94411 1.02877 0.94548 1.69992 1.18935 1.37601 1.31351 0.86018 0.76737 0.80926 0.79752 1.17788 1.22380 1.18857 1.21455 0.93786 0.94084 0.92909 1.20283 1.08701 0.92408 0.91232 1.23042 0.91434 1.04435 0.98929 1.22973 0.98379 1.03724 0.94191 1.76917 1.24863 0.96683 1.14434 0.92895 0.87861 0.92596 0.88422 0.85010 0.77055 0.92356 0.90505 0.89540 0.92770 0.90884 0.93885 0.92310 0.87701 0.87973 0.86396 0.87224 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.09 71.98 0.73 -0.99 16 2 C 0.12 1.37 7.21 86.38 0.62 2.00 16 3 N -0.35 -7.86 3.65 -346.30 -1.26 -9.12 16 4 C 0.11 2.82 9.16 84.28 0.77 3.60 16 5 C -0.30 -10.46 5.39 -20.15 -0.11 -10.57 16 6 C 0.58 25.12 7.48 86.66 0.65 25.77 16 7 O -0.60 -30.82 15.69 -4.05 -0.06 -30.88 16 8 N -0.59 -24.91 2.75 -830.68 -2.29 -27.20 16 9 C 0.08 2.58 8.24 127.77 1.05 3.63 16 10 C 0.23 11.45 2.22 44.25 0.10 11.55 16 11 H 0.03 1.67 5.97 -2.39 -0.01 1.65 16 12 C -0.15 -6.44 8.66 71.98 0.62 -5.81 16 13 C -0.52 -29.49 8.95 25.60 0.23 -29.26 16 14 H 0.05 2.90 7.89 -2.91 -0.02 2.87 16 15 C 0.02 1.40 5.45 84.65 0.46 1.86 16 16 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 17 Si 0.94 45.46 24.37 68.60 1.67 47.13 16 18 H -0.25 -11.16 6.87 99.48 0.68 -10.47 16 19 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 20 H -0.26 -12.74 6.53 99.48 0.65 -12.09 16 21 C 0.14 4.67 6.79 43.52 0.30 4.97 16 22 C -0.11 -3.23 5.68 -11.54 -0.07 -3.30 16 23 C -0.14 -3.17 10.14 30.59 0.31 -2.86 16 24 C -0.15 -3.93 10.23 30.59 0.31 -3.62 16 25 N -0.31 -8.66 11.91 -46.67 -0.56 -9.21 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.13 0.75 8.06 -2.39 -0.02 0.73 16 31 H 0.21 4.04 6.25 -2.91 -0.02 4.02 16 32 H 0.06 1.70 7.32 -2.39 -0.02 1.68 16 33 H 0.08 2.37 6.44 -2.38 -0.02 2.36 16 34 H 0.09 2.14 5.89 -2.39 -0.01 2.13 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.78 6.66 -2.39 -0.02 2.76 16 37 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.10 3.60 7.86 -2.39 -0.02 3.58 16 40 H 0.10 2.25 7.90 -2.38 -0.02 2.23 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.11 2.52 8.14 -2.39 -0.02 2.51 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -78.15 345.47 4.71 -73.44 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.93 Total: 16.22 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 5.98 Total: -3.02 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -3.81 Total: -102.89 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.06 Total: -30.88 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.13 kcal Total: -78.15 4.71 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.648 kcal (2) G-P(sol) polarization free energy of solvation -78.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds