Wall clock time and date at job start Tue Mar 31 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47188 * 2 1 4 4 N 1.39934 * 125.74979 * 269.97645 * 3 2 1 5 5 C 1.30438 * 108.91370 * 179.77048 * 4 3 2 6 6 C 1.41319 * 108.02850 * 0.38491 * 5 4 3 7 7 C 1.47358 * 126.42317 * 179.87609 * 6 5 4 8 8 O 1.21627 * 120.00201 * 171.16472 * 7 6 5 9 9 N 1.34780 * 120.00203 * 351.16747 * 7 6 5 10 10 C 1.36985 * 119.99773 * 0.31274 * 9 7 6 11 11 H 1.08000 * 119.99988 * 113.30733 * 10 9 7 12 12 C 1.38977 * 120.00207 * 293.31513 * 10 9 7 13 13 N 1.31410 * 120.00208 * 175.17276 * 12 10 9 14 14 Si 1.86798 * 119.99740 * 355.16733 * 12 10 9 15 15 H 1.48504 * 109.47092 * 95.11832 * 14 12 10 16 16 H 1.48502 * 109.47008 * 215.11314 * 14 12 10 17 17 H 1.48502 * 109.47472 * 335.11439 * 14 12 10 18 18 C 1.46493 * 120.00117 * 180.31574 * 9 7 6 19 19 C 1.54966 * 110.92521 * 121.71786 * 18 9 7 20 20 C 1.54260 * 104.16322 * 156.29523 * 19 18 9 21 21 C 1.53879 * 106.64015 * 336.44481 * 20 19 18 22 22 C 1.54267 * 106.59520 * 359.97438 * 21 20 19 23 23 C 1.34280 * 125.75180 * 89.99844 * 3 2 1 24 24 C 1.50695 * 126.29849 * 359.96195 * 23 3 2 25 25 H 1.09001 * 109.46747 * 300.00330 * 1 2 3 26 26 H 1.08995 * 109.46969 * 59.99791 * 1 2 3 27 27 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46877 * 240.00160 * 2 1 3 29 29 H 1.09001 * 109.47208 * 119.99826 * 2 1 3 30 30 H 1.08006 * 125.98762 * 180.26738 * 5 4 3 31 31 H 0.96994 * 120.00188 * 179.97438 * 13 12 10 32 32 H 1.09000 * 110.67572 * 358.40866 * 18 9 7 33 33 H 1.09004 * 110.47334 * 37.63796 * 19 18 9 34 34 H 1.08999 * 110.52443 * 274.97692 * 19 18 9 35 35 H 1.08999 * 110.03276 * 217.13497 * 20 19 18 36 36 H 1.09000 * 110.03614 * 95.75314 * 20 19 18 37 37 H 1.08995 * 110.03335 * 119.25890 * 21 20 19 38 38 H 1.08998 * 110.03373 * 240.64525 * 21 20 19 39 39 H 1.09005 * 110.48512 * 142.29147 * 22 21 20 40 40 H 1.09002 * 110.48579 * 264.79518 * 22 21 20 41 41 H 1.08999 * 109.46959 * 269.99635 * 24 23 3 42 42 H 1.09002 * 109.47488 * 29.99802 * 24 23 3 43 43 H 1.09009 * 109.47321 * 150.00120 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2914 2.1519 -1.1357 5 6 2.7027 3.3306 -0.7579 6 6 2.7173 3.3567 0.6550 7 6 3.1180 4.4917 1.5050 8 8 2.9352 4.4460 2.7066 9 7 3.6871 5.5807 0.9510 10 6 3.8871 5.6350 -0.4030 11 1 3.3392 6.3476 -1.0017 12 6 4.7950 4.7729 -1.0065 13 7 4.9180 4.7590 -2.3148 14 14 5.8405 3.6342 0.0421 15 1 5.1845 2.3052 0.1347 16 1 7.1812 3.4823 -0.5779 17 1 5.9869 4.2099 1.4032 18 6 4.0917 6.7062 1.7970 19 6 5.6066 6.9957 1.6455 20 6 5.7509 8.4756 2.0562 21 6 4.3743 9.1288 1.8413 22 6 3.4407 8.0232 1.3066 23 6 2.2799 2.1209 1.0898 24 6 2.1243 1.6833 2.5234 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 2.9848 4.1436 -1.4105 31 1 5.5518 4.1576 -2.7359 32 1 3.8381 6.5147 2.8396 33 1 5.9202 6.8544 0.6112 34 1 6.1862 6.3566 2.3116 35 1 6.4981 8.9653 1.4317 36 1 6.0377 8.5457 3.1055 37 1 3.9926 9.5151 2.7864 38 1 4.4536 9.9360 1.1131 39 1 2.4403 8.1332 1.7253 40 1 3.4023 8.0500 0.2176 41 1 1.1181 1.9210 2.8686 42 1 2.2885 0.6082 2.5950 43 1 2.8537 2.2045 3.1436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601206058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:16 Heat of formation + Delta-G solvation = 46.661165 kcal Electronic energy + Delta-G solvation = -24884.309920 eV Core-core repulsion = 21545.470091 eV Total energy + Delta-G solvation = -3338.839830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70526 -38.79024 -36.65966 -34.71014 -33.79172 -31.91557 -31.47296 -29.18419 -28.03788 -27.40226 -26.24643 -24.71698 -23.52868 -21.51391 -19.96446 -19.77423 -19.35826 -18.50454 -17.09181 -16.06944 -15.63735 -15.41829 -14.84186 -14.72608 -14.23654 -13.82345 -13.67536 -13.48999 -13.13274 -12.89261 -12.71026 -12.63267 -12.40044 -12.22034 -11.85975 -11.84250 -11.56709 -11.28770 -11.20722 -11.06388 -10.76714 -10.68953 -10.58029 -10.37960 -10.02254 -9.92715 -9.82573 -9.67945 -8.85038 -8.59580 -8.39832 -7.74368 -7.24362 -6.45093 -4.36637 2.29941 3.03738 3.17471 3.27833 3.32361 3.41089 4.19937 4.48416 4.58053 4.80524 4.87100 5.07753 5.14917 5.25701 5.31327 5.34604 5.47278 5.52128 5.58807 5.66551 5.90540 6.06607 6.08707 6.10172 6.13620 6.19201 6.24228 6.27504 6.34564 6.39934 6.47026 6.48449 6.61587 6.62412 6.85542 6.93362 6.99273 7.19464 7.61004 7.67548 7.76028 7.99459 8.44775 8.53760 9.02913 9.34826 9.81188 10.56919 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.006365 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.236815 B = 4397.758369 C = 4943.298725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.129 3.871 3 N -0.378 5.378 4 N -0.327 5.327 5 C 0.101 3.899 6 C -0.272 4.272 7 C 0.572 3.428 8 O -0.600 6.600 9 N -0.466 5.466 10 C -0.347 4.347 11 H 0.100 0.900 12 C 0.086 3.914 13 N -0.866 5.866 14 Si 0.865 3.135 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.255 1.255 18 C 0.135 3.865 19 C -0.131 4.131 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.126 4.126 23 C 0.122 3.878 24 C -0.086 4.086 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.244 0.756 31 H 0.278 0.722 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -3.433 5.538 7.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 N -0.159 5.159 4 N -0.145 5.145 5 C -0.085 4.085 6 C -0.286 4.286 7 C 0.364 3.636 8 O -0.485 6.485 9 N -0.186 5.186 10 C -0.476 4.476 11 H 0.118 0.882 12 C -0.123 4.123 13 N -0.500 5.500 14 Si 0.691 3.309 15 H -0.194 1.194 16 H -0.215 1.215 17 H -0.179 1.179 18 C 0.032 3.968 19 C -0.170 4.170 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.165 4.165 23 C -0.009 4.009 24 C -0.145 4.145 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.259 0.741 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.691 -4.419 4.929 7.579 hybrid contribution 0.954 -0.228 0.885 1.321 sum -2.737 -4.647 5.814 7.930 Atomic orbital electron populations 1.22161 0.94665 1.02393 1.03309 1.21511 0.94963 0.79097 1.03694 1.48484 1.51556 1.11770 1.04087 1.77237 1.24793 1.05686 1.06811 1.26299 0.91426 0.95211 0.95553 1.20003 1.18541 0.95490 0.94578 1.17674 0.77089 0.82827 0.86039 1.90554 1.59898 1.82570 1.15492 1.43270 1.54228 1.14039 1.07048 1.18756 1.24796 1.23369 0.80643 0.88245 1.25730 0.94589 0.96490 0.95444 1.69654 1.35232 1.36745 1.08396 0.86879 0.79861 0.82205 0.82001 1.19436 1.21493 1.17900 1.21970 0.92957 0.86801 0.95119 1.22665 0.97129 0.94475 1.02695 1.22040 0.97097 0.96387 1.00196 1.22033 0.95553 0.97984 1.00097 1.22573 0.97470 0.94030 1.02397 1.21338 0.97317 0.91784 0.90470 1.20483 1.04214 1.00191 0.89575 0.92116 0.91543 0.91035 0.89101 0.89725 0.74062 0.91130 0.89690 0.89806 0.92896 0.92349 0.92717 0.92681 0.92335 0.92705 0.90000 0.90373 0.92359 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.13 1.76 6.93 -4.04 -0.03 1.73 16 3 N -0.38 -7.35 3.58 -56.58 -0.20 -7.55 16 4 N -0.33 -7.45 12.50 30.87 0.39 -7.07 16 5 C 0.10 2.46 8.45 -16.97 -0.14 2.32 16 6 C -0.27 -6.47 4.18 -105.06 -0.44 -6.91 16 7 C 0.57 14.18 6.15 -12.55 -0.08 14.11 16 8 O -0.60 -15.21 14.34 5.25 0.08 -15.14 16 9 N -0.47 -11.11 1.79 -106.80 -0.19 -11.30 16 10 C -0.35 -8.63 5.47 -14.98 -0.08 -8.72 16 11 H 0.10 2.60 7.36 -52.49 -0.39 2.21 16 12 C 0.09 2.19 2.99 -17.46 -0.05 2.13 16 13 N -0.87 -22.79 13.31 55.50 0.74 -22.05 16 14 Si 0.86 21.52 24.06 -169.99 -4.09 17.43 16 15 H -0.27 -6.99 6.87 56.52 0.39 -6.60 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.26 -6.44 6.58 56.52 0.37 -6.07 16 18 C 0.14 2.86 3.29 -65.90 -0.22 2.64 16 19 C -0.13 -2.58 5.68 -25.03 -0.14 -2.72 16 20 C -0.12 -1.87 6.80 -25.61 -0.17 -2.05 16 21 C -0.12 -1.80 6.80 -25.61 -0.17 -1.98 16 22 C -0.13 -2.31 6.35 -25.07 -0.16 -2.47 16 23 C 0.12 2.52 7.01 -81.57 -0.57 1.95 16 24 C -0.09 -1.43 9.49 36.00 0.34 -1.09 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 0.94 7.02 -51.93 -0.36 0.58 16 30 H 0.24 6.28 3.86 -52.48 -0.20 6.07 16 31 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16 33 H 0.08 1.81 7.08 -51.93 -0.37 1.44 16 34 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.61 6.73 -51.93 -0.35 1.26 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.76 7.05 -51.93 -0.37 0.40 16 43 H 0.10 1.80 6.72 -51.92 -0.35 1.45 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -29.54 330.44 -6.41 -35.95 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.57 Total: 7.33 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.54 Total: -2.58 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.73 Total: -47.97 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.09 Total: 17.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.54 -6.41 -35.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.610 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds