Wall clock time and date at job start Tue Mar 31 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47188 * 2 1 4 4 N 1.39934 * 125.74979 * 269.97645 * 3 2 1 5 5 C 1.30438 * 108.91370 * 179.77048 * 4 3 2 6 6 C 1.41319 * 108.02850 * 0.38491 * 5 4 3 7 7 C 1.47358 * 126.42317 * 179.87609 * 6 5 4 8 8 O 1.21627 * 120.00201 * 171.16472 * 7 6 5 9 9 N 1.34780 * 120.00203 * 351.16747 * 7 6 5 10 10 C 1.36985 * 119.99773 * 0.31274 * 9 7 6 11 11 H 1.08000 * 119.99988 * 113.30733 * 10 9 7 12 12 C 1.38977 * 120.00207 * 293.31513 * 10 9 7 13 13 N 1.31410 * 120.00208 * 175.17276 * 12 10 9 14 14 Si 1.86798 * 119.99740 * 355.16733 * 12 10 9 15 15 H 1.48504 * 109.47092 * 95.11832 * 14 12 10 16 16 H 1.48502 * 109.47008 * 215.11314 * 14 12 10 17 17 H 1.48502 * 109.47472 * 335.11439 * 14 12 10 18 18 C 1.46493 * 120.00117 * 180.31574 * 9 7 6 19 19 C 1.54966 * 110.92521 * 121.71786 * 18 9 7 20 20 C 1.54260 * 104.16322 * 156.29523 * 19 18 9 21 21 C 1.53879 * 106.64015 * 336.44481 * 20 19 18 22 22 C 1.54267 * 106.59520 * 359.97438 * 21 20 19 23 23 C 1.34280 * 125.75180 * 89.99844 * 3 2 1 24 24 C 1.50695 * 126.29849 * 359.96195 * 23 3 2 25 25 H 1.09001 * 109.46747 * 300.00330 * 1 2 3 26 26 H 1.08995 * 109.46969 * 59.99791 * 1 2 3 27 27 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46877 * 240.00160 * 2 1 3 29 29 H 1.09001 * 109.47208 * 119.99826 * 2 1 3 30 30 H 1.08006 * 125.98762 * 180.26738 * 5 4 3 31 31 H 0.96994 * 120.00188 * 179.97438 * 13 12 10 32 32 H 1.09000 * 110.67572 * 358.40866 * 18 9 7 33 33 H 1.09004 * 110.47334 * 37.63796 * 19 18 9 34 34 H 1.08999 * 110.52443 * 274.97692 * 19 18 9 35 35 H 1.08999 * 110.03276 * 217.13497 * 20 19 18 36 36 H 1.09000 * 110.03614 * 95.75314 * 20 19 18 37 37 H 1.08995 * 110.03335 * 119.25890 * 21 20 19 38 38 H 1.08998 * 110.03373 * 240.64525 * 21 20 19 39 39 H 1.09005 * 110.48512 * 142.29147 * 22 21 20 40 40 H 1.09002 * 110.48579 * 264.79518 * 22 21 20 41 41 H 1.08999 * 109.46959 * 269.99635 * 24 23 3 42 42 H 1.09002 * 109.47488 * 29.99802 * 24 23 3 43 43 H 1.09009 * 109.47321 * 150.00120 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2914 2.1519 -1.1357 5 6 2.7027 3.3306 -0.7579 6 6 2.7173 3.3567 0.6550 7 6 3.1180 4.4917 1.5050 8 8 2.9352 4.4460 2.7066 9 7 3.6871 5.5807 0.9510 10 6 3.8871 5.6350 -0.4030 11 1 3.3392 6.3476 -1.0017 12 6 4.7950 4.7729 -1.0065 13 7 4.9180 4.7590 -2.3148 14 14 5.8405 3.6342 0.0421 15 1 5.1845 2.3052 0.1347 16 1 7.1812 3.4823 -0.5779 17 1 5.9869 4.2099 1.4032 18 6 4.0917 6.7062 1.7970 19 6 5.6066 6.9957 1.6455 20 6 5.7509 8.4756 2.0562 21 6 4.3743 9.1288 1.8413 22 6 3.4407 8.0232 1.3066 23 6 2.2799 2.1209 1.0898 24 6 2.1243 1.6833 2.5234 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 2.9848 4.1436 -1.4105 31 1 5.5518 4.1576 -2.7359 32 1 3.8381 6.5147 2.8396 33 1 5.9202 6.8544 0.6112 34 1 6.1862 6.3566 2.3116 35 1 6.4981 8.9653 1.4317 36 1 6.0377 8.5457 3.1055 37 1 3.9926 9.5151 2.7864 38 1 4.4536 9.9360 1.1131 39 1 2.4403 8.1332 1.7253 40 1 3.4023 8.0500 0.2176 41 1 1.1181 1.9210 2.8686 42 1 2.2885 0.6082 2.5950 43 1 2.8537 2.2045 3.1436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601206058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:15 Heat of formation + Delta-G solvation = 28.753247 kcal Electronic energy + Delta-G solvation = -24885.086466 eV Core-core repulsion = 21545.470091 eV Total energy + Delta-G solvation = -3339.616375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.37743 -40.53384 -38.28817 -36.46069 -35.19349 -33.83462 -32.98394 -30.62128 -29.49133 -28.88712 -27.83713 -26.62123 -24.76906 -23.20603 -21.62734 -21.27605 -20.95465 -20.12392 -18.87005 -17.76458 -17.43641 -16.92159 -16.38175 -16.22922 -15.82874 -15.60753 -15.31323 -15.07181 -14.69641 -14.59215 -14.10704 -14.00994 -13.87902 -13.64968 -13.42844 -13.19489 -13.04925 -12.92335 -12.78763 -12.58698 -12.38846 -12.20948 -12.00687 -11.92504 -11.77858 -11.61884 -11.37180 -11.11988 -10.76551 -10.46745 -10.09766 -9.50405 -9.09139 -8.46929 -6.37234 0.66154 1.16136 1.25549 1.33383 1.45748 1.62076 2.17719 2.68616 2.79931 2.87272 3.67216 3.73768 3.90696 3.91273 4.07800 4.11042 4.15523 4.28791 4.34413 4.47267 4.65387 4.67269 4.69291 4.72361 4.74317 4.80166 4.86151 4.92250 4.94801 5.01589 5.02638 5.18537 5.19045 5.21269 5.26712 5.42986 5.54935 5.60893 5.76014 5.85538 6.08054 6.15339 6.44976 6.80958 7.02273 7.43853 7.89443 8.57314 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.006365 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.236815 B = 4397.758369 C = 4943.298725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.112 3.888 3 N -0.366 5.366 4 N -0.345 5.345 5 C 0.087 3.913 6 C -0.315 4.315 7 C 0.563 3.437 8 O -0.613 6.613 9 N -0.473 5.473 10 C -0.329 4.329 11 H 0.081 0.919 12 C 0.074 3.926 13 N -0.889 5.889 14 Si 0.901 3.099 15 H -0.283 1.283 16 H -0.286 1.286 17 H -0.263 1.263 18 C 0.123 3.877 19 C -0.131 4.131 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.122 4.122 23 C 0.131 3.869 24 C -0.082 4.082 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.221 0.779 31 H 0.278 0.722 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -4.331 7.204 9.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.007 4.007 3 N -0.146 5.146 4 N -0.165 5.165 5 C -0.099 4.099 6 C -0.329 4.329 7 C 0.355 3.645 8 O -0.500 6.500 9 N -0.193 5.193 10 C -0.458 4.458 11 H 0.098 0.902 12 C -0.132 4.132 13 N -0.525 5.525 14 Si 0.728 3.272 15 H -0.210 1.210 16 H -0.213 1.213 17 H -0.188 1.188 18 C 0.020 3.980 19 C -0.169 4.169 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.002 4.002 24 C -0.140 4.140 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.236 0.764 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.168 -5.315 6.579 9.429 hybrid contribution 0.986 -0.077 0.390 1.063 sum -3.182 -5.392 6.969 9.368 Atomic orbital electron populations 1.22119 0.92688 1.04600 1.02249 1.22145 0.96589 0.76101 1.05860 1.48937 1.49759 1.13185 1.02768 1.77108 1.25138 1.05608 1.08646 1.25866 0.92797 0.95504 0.95722 1.20152 1.21459 0.96934 0.94359 1.17966 0.77028 0.83335 0.86171 1.90517 1.60698 1.82984 1.15832 1.43414 1.54252 1.14780 1.06857 1.18475 1.23803 1.22337 0.81144 0.90152 1.25846 0.95056 0.96829 0.95504 1.69684 1.36112 1.37716 1.09012 0.86360 0.79128 0.80768 0.80969 1.20960 1.21268 1.18774 1.22209 0.94439 0.87017 0.94320 1.22619 0.95736 0.97501 1.01052 1.22030 0.97935 0.93242 1.01759 1.22019 0.94197 0.97036 1.01564 1.22512 0.98487 0.93832 1.01172 1.21924 0.95061 0.90795 0.92453 1.20597 1.04692 1.02563 0.86197 0.92123 0.93645 0.87147 0.88341 0.86217 0.76363 0.91118 0.90424 0.92275 0.93692 0.90900 0.90575 0.90364 0.90661 0.92255 0.91975 0.88390 0.88106 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.36 16 2 C 0.11 2.69 6.93 86.38 0.60 3.28 16 3 N -0.37 -13.68 3.58 -332.92 -1.19 -14.87 16 4 N -0.35 -15.87 12.50 -56.26 -0.70 -16.57 16 5 C 0.09 4.33 8.45 85.66 0.72 5.06 16 6 C -0.31 -15.19 4.18 -20.15 -0.08 -15.27 16 7 C 0.56 28.45 6.15 86.64 0.53 28.99 16 8 O -0.61 -31.43 14.34 -4.12 -0.06 -31.49 16 9 N -0.47 -23.20 1.79 -610.05 -1.09 -24.29 16 10 C -0.33 -17.01 5.47 84.07 0.46 -16.55 16 11 H 0.08 4.43 7.36 -2.91 -0.02 4.41 16 12 C 0.07 3.88 2.99 84.93 0.25 4.13 16 13 N -0.89 -48.37 13.31 21.67 0.29 -48.08 16 14 Si 0.90 45.46 24.06 68.60 1.65 47.11 16 15 H -0.28 -14.87 6.87 99.48 0.68 -14.18 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.26 -13.50 6.58 99.48 0.65 -12.85 16 18 C 0.12 5.26 3.29 46.31 0.15 5.41 16 19 C -0.13 -5.12 5.68 31.69 0.18 -4.94 16 20 C -0.11 -3.27 6.80 31.32 0.21 -3.05 16 21 C -0.11 -3.08 6.80 31.32 0.21 -2.87 16 22 C -0.12 -4.41 6.35 31.67 0.20 -4.21 16 23 C 0.13 5.26 7.01 42.15 0.30 5.56 16 24 C -0.08 -2.50 9.49 71.23 0.68 -1.83 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.12 2.07 7.02 -2.39 -0.02 2.06 16 30 H 0.22 11.91 3.86 -2.91 -0.01 11.90 16 31 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.08 3.40 6.99 -2.39 -0.02 3.39 16 33 H 0.06 2.60 7.08 -2.38 -0.02 2.58 16 34 H 0.04 1.78 7.94 -2.39 -0.02 1.76 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.06 2.49 6.73 -2.39 -0.02 2.47 16 41 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.10 2.17 7.05 -2.39 -0.02 2.16 16 43 H 0.08 2.74 6.72 -2.38 -0.02 2.72 16 Total: -1.00 -67.00 330.44 4.98 -62.02 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.93 Total: 24.82 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.15 Total: 1.35 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -2.70 Total: -103.81 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.06 Total: -31.49 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.65 Total: 47.11 kcal Total: -67.00 4.98 -62.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601206058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.775 kcal (2) G-P(sol) polarization free energy of solvation -67.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds