Wall clock time and date at job start Tue Mar 31 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47408 * 2 1 4 4 N 1.39935 * 125.75506 * 270.29192 * 3 2 1 5 5 C 1.30449 * 108.89713 * 180.17660 * 4 3 2 6 6 C 1.41294 * 108.02238 * 359.57806 * 5 4 3 7 7 C 1.47426 * 126.41468 * 180.22929 * 6 5 4 8 8 O 1.21608 * 120.00095 * 220.57107 * 7 6 5 9 9 N 1.34776 * 119.99943 * 40.56493 * 7 6 5 10 10 C 1.46929 * 120.63114 * 5.22993 * 9 7 6 11 11 C 1.53627 * 108.54369 * 126.36201 * 10 9 7 12 12 C 1.53043 * 109.23879 * 54.85756 * 11 10 9 13 13 C 1.50706 * 109.44425 * 178.49705 * 12 11 10 14 14 H 1.08001 * 119.99876 * 120.06126 * 13 12 11 15 15 C 1.37879 * 119.99890 * 300.05715 * 13 12 11 16 16 N 1.31512 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99926 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47055 * 60.00123 * 17 15 13 19 19 H 1.48497 * 109.46827 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47033 * 300.00082 * 17 15 13 21 21 C 1.53042 * 109.53763 * 298.50453 * 12 11 10 22 22 C 1.46927 * 120.63248 * 185.50198 * 9 7 6 23 23 C 1.34265 * 125.75160 * 89.99602 * 3 2 1 24 24 C 1.50694 * 126.29344 * 359.97438 * 23 3 2 25 25 H 1.08999 * 109.47714 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47518 * 300.00148 * 1 2 3 27 27 H 1.09002 * 109.47033 * 60.00211 * 1 2 3 28 28 H 1.08997 * 109.47204 * 239.99617 * 2 1 3 29 29 H 1.08998 * 109.46878 * 120.00256 * 2 1 3 30 30 H 1.08000 * 125.98980 * 179.84704 * 5 4 3 31 31 H 1.08997 * 109.58349 * 246.19640 * 10 9 7 32 32 H 1.08999 * 109.58454 * 6.61906 * 10 9 7 33 33 H 1.08992 * 109.63335 * 294.86366 * 11 10 9 34 34 H 1.08998 * 109.42495 * 174.72267 * 11 10 9 35 35 H 1.08997 * 109.45835 * 58.52972 * 12 11 10 36 36 H 0.97002 * 120.00271 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.49894 * 301.41927 * 21 12 11 38 38 H 1.08999 * 109.52039 * 181.33546 * 21 12 11 39 39 H 1.09003 * 109.58742 * 353.37684 * 22 9 7 40 40 H 1.09000 * 109.58803 * 113.65838 * 22 9 7 41 41 H 1.09002 * 109.47102 * 270.02619 * 24 23 3 42 42 H 1.08998 * 109.47213 * 30.02150 * 24 23 3 43 43 H 1.08994 * 109.47267 * 150.02330 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2855 2.1540 -1.1356 5 6 2.7071 3.3291 -0.7573 6 6 2.7166 3.3562 0.6553 7 6 3.1187 4.4910 1.5062 8 8 3.7759 4.2952 2.5104 9 7 2.7579 5.7456 1.1709 10 6 1.8696 5.9885 0.0261 11 6 0.6821 6.8396 0.5010 12 6 1.2088 8.1121 1.1685 13 6 0.0472 8.9682 1.6033 14 1 -0.0773 9.2202 2.6461 15 6 -0.8566 9.4296 0.6698 16 7 -0.7053 9.1223 -0.5999 17 14 -2.2960 10.4912 1.2087 18 1 -1.7852 11.7268 1.8547 19 1 -3.1146 10.8536 0.0239 20 1 -3.1329 9.7366 2.1759 21 6 2.0518 7.7382 2.3898 22 6 3.2503 6.8969 1.9397 23 6 2.2798 2.1208 1.0896 24 6 2.1244 1.6830 2.5232 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.9941 4.1406 -1.4096 31 1 2.4153 6.5202 -0.7534 32 1 1.5067 5.0372 -0.3630 33 1 0.0881 6.2722 1.2173 34 1 0.0627 7.1074 -0.3550 35 1 1.8231 8.6666 0.4591 36 1 -1.3413 9.4466 -1.2566 37 1 1.4448 7.1622 3.0883 38 1 2.4071 8.6452 2.8787 39 1 3.7986 6.5451 2.8136 40 1 3.9083 7.4997 1.3138 41 1 1.1180 1.9200 2.8684 42 1 2.2892 0.6080 2.5947 43 1 2.8534 2.2044 3.1434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:11 Heat of formation + Delta-G solvation = 29.364988 kcal Electronic energy + Delta-G solvation = -23903.142452 eV Core-core repulsion = 20563.552604 eV Total energy + Delta-G solvation = -3339.589848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45828 -39.14118 -36.62220 -34.79652 -33.41664 -32.19481 -31.35335 -30.14966 -29.38822 -27.41915 -26.01983 -24.18683 -23.29434 -22.24024 -21.62810 -20.23100 -19.37706 -18.21758 -17.08700 -16.40514 -15.95787 -15.51738 -15.30552 -14.61989 -14.54013 -14.38017 -14.06517 -13.32739 -13.21048 -13.19163 -12.98992 -12.72908 -12.62212 -12.49296 -12.34395 -12.10423 -12.06722 -11.59715 -11.52890 -11.18498 -10.90811 -10.77611 -10.64365 -10.34632 -10.06228 -9.61710 -9.43493 -9.29921 -9.12385 -8.87478 -8.44674 -8.34608 -7.87382 -6.00314 -4.06424 1.66574 2.31803 2.39303 3.31104 3.35843 3.38776 3.41303 3.76594 4.31711 4.42857 4.53899 4.68503 4.81501 4.89151 5.02142 5.20510 5.29180 5.31408 5.40693 5.46100 5.61872 5.71810 5.75120 5.85889 5.90077 5.99262 6.08233 6.16323 6.21197 6.38807 6.48877 6.55099 6.71877 6.88573 6.96896 7.10278 7.22478 7.34997 7.63141 7.69955 7.96287 8.03702 8.08837 8.43597 8.70838 8.96750 9.58384 11.05040 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.004261 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.530940 B = 6569.726694 C = 7259.210239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.363 5.363 4 N -0.301 5.301 5 C 0.086 3.914 6 C -0.281 4.281 7 C 0.592 3.408 8 O -0.564 6.564 9 N -0.594 5.594 10 C 0.100 3.900 11 C -0.121 4.121 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.122 4.122 22 C 0.113 3.887 23 C 0.142 3.858 24 C -0.100 4.100 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.190 0.810 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -16.759 0.570 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.144 5.144 4 N -0.120 5.120 5 C -0.101 4.101 6 C -0.296 4.296 7 C 0.380 3.620 8 O -0.445 6.445 9 N -0.325 5.325 10 C -0.023 4.023 11 C -0.160 4.160 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.161 4.161 22 C -0.009 4.009 23 C 0.011 3.989 24 C -0.159 4.159 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.207 0.793 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.200 -17.708 -0.112 18.200 hybrid contribution -0.813 1.190 0.679 1.593 sum 3.387 -16.519 0.567 16.872 Atomic orbital electron populations 1.22195 0.94003 1.03089 1.03664 1.21708 0.95479 0.77822 1.04451 1.48461 1.50564 1.12061 1.03338 1.77140 1.22869 1.04566 1.07451 1.24062 0.96854 0.95380 0.93787 1.20002 1.19842 0.95925 0.93837 1.17275 0.78925 0.81957 0.83807 1.90675 1.41595 1.84851 1.27334 1.48050 1.47566 1.05270 1.31614 1.22285 0.92392 1.00325 0.87248 1.22070 0.95371 0.95913 1.02632 1.18639 0.94094 0.92618 0.91647 1.21182 1.09534 1.30556 0.93785 0.92795 1.24948 0.97822 0.96186 0.94935 1.69827 1.36912 1.45576 1.00749 0.86693 0.82573 0.80975 0.77965 1.20304 1.21331 1.20392 1.21995 0.95803 0.97855 1.00407 1.21686 0.97116 0.86391 0.95682 1.21351 0.96066 0.90572 0.90923 1.20636 1.04616 1.01727 0.88873 0.90448 0.91804 0.91344 0.88525 0.88868 0.79305 0.92088 0.90891 0.94418 0.87919 0.95452 0.92955 0.92999 0.92222 0.90316 0.92228 0.89845 0.91086 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.13 1.04 6.93 -4.04 -0.03 1.01 16 3 N -0.36 -4.63 3.58 -56.61 -0.20 -4.83 16 4 N -0.30 -4.45 12.50 30.86 0.39 -4.07 16 5 C 0.09 1.29 9.63 -16.98 -0.16 1.13 16 6 C -0.28 -4.57 5.19 -105.07 -0.55 -5.12 16 7 C 0.59 10.97 7.43 -12.52 -0.09 10.88 16 8 O -0.56 -11.53 15.11 5.27 0.08 -11.45 16 9 N -0.59 -11.05 2.97 -173.76 -0.52 -11.57 16 10 C 0.10 1.85 5.52 -3.48 -0.02 1.83 16 11 C -0.12 -2.74 5.17 -26.38 -0.14 -2.87 16 12 C 0.05 1.16 2.06 -91.72 -0.19 0.97 16 13 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -24.58 11.30 55.43 0.63 -23.96 16 17 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 22 C 0.11 2.11 6.44 -3.71 -0.02 2.08 16 23 C 0.14 1.98 7.00 -81.60 -0.57 1.41 16 24 C -0.10 -1.11 9.92 36.00 0.36 -0.76 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.55 7.02 -51.93 -0.36 0.18 16 30 H 0.19 2.47 7.37 -52.49 -0.39 2.08 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.26 4.77 -51.93 -0.25 1.01 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.56 7.05 -51.93 -0.37 0.20 16 43 H 0.10 1.35 6.74 -51.93 -0.35 1.00 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -31.29 342.60 -7.63 -38.93 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.58 Total: 1.34 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.56 Total: -5.48 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.29 Total: -44.43 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.29 -7.63 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.290 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds