Wall clock time and date at job start Tue Mar 31 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47408 * 2 1 4 4 N 1.39935 * 125.75506 * 270.29192 * 3 2 1 5 5 C 1.30449 * 108.89713 * 180.17660 * 4 3 2 6 6 C 1.41294 * 108.02238 * 359.57806 * 5 4 3 7 7 C 1.47426 * 126.41468 * 180.22929 * 6 5 4 8 8 O 1.21608 * 120.00095 * 220.57107 * 7 6 5 9 9 N 1.34776 * 119.99943 * 40.56493 * 7 6 5 10 10 C 1.46929 * 120.63114 * 5.22993 * 9 7 6 11 11 C 1.53627 * 108.54369 * 126.36201 * 10 9 7 12 12 C 1.53043 * 109.23879 * 54.85756 * 11 10 9 13 13 C 1.50706 * 109.44425 * 178.49705 * 12 11 10 14 14 H 1.08001 * 119.99876 * 120.06126 * 13 12 11 15 15 C 1.37879 * 119.99890 * 300.05715 * 13 12 11 16 16 N 1.31512 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99926 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47055 * 60.00123 * 17 15 13 19 19 H 1.48497 * 109.46827 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47033 * 300.00082 * 17 15 13 21 21 C 1.53042 * 109.53763 * 298.50453 * 12 11 10 22 22 C 1.46927 * 120.63248 * 185.50198 * 9 7 6 23 23 C 1.34265 * 125.75160 * 89.99602 * 3 2 1 24 24 C 1.50694 * 126.29344 * 359.97438 * 23 3 2 25 25 H 1.08999 * 109.47714 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47518 * 300.00148 * 1 2 3 27 27 H 1.09002 * 109.47033 * 60.00211 * 1 2 3 28 28 H 1.08997 * 109.47204 * 239.99617 * 2 1 3 29 29 H 1.08998 * 109.46878 * 120.00256 * 2 1 3 30 30 H 1.08000 * 125.98980 * 179.84704 * 5 4 3 31 31 H 1.08997 * 109.58349 * 246.19640 * 10 9 7 32 32 H 1.08999 * 109.58454 * 6.61906 * 10 9 7 33 33 H 1.08992 * 109.63335 * 294.86366 * 11 10 9 34 34 H 1.08998 * 109.42495 * 174.72267 * 11 10 9 35 35 H 1.08997 * 109.45835 * 58.52972 * 12 11 10 36 36 H 0.97002 * 120.00271 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.49894 * 301.41927 * 21 12 11 38 38 H 1.08999 * 109.52039 * 181.33546 * 21 12 11 39 39 H 1.09003 * 109.58742 * 353.37684 * 22 9 7 40 40 H 1.09000 * 109.58803 * 113.65838 * 22 9 7 41 41 H 1.09002 * 109.47102 * 270.02619 * 24 23 3 42 42 H 1.08998 * 109.47213 * 30.02150 * 24 23 3 43 43 H 1.08994 * 109.47267 * 150.02330 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2855 2.1540 -1.1356 5 6 2.7071 3.3291 -0.7573 6 6 2.7166 3.3562 0.6553 7 6 3.1187 4.4910 1.5062 8 8 3.7759 4.2952 2.5104 9 7 2.7579 5.7456 1.1709 10 6 1.8696 5.9885 0.0261 11 6 0.6821 6.8396 0.5010 12 6 1.2088 8.1121 1.1685 13 6 0.0472 8.9682 1.6033 14 1 -0.0773 9.2202 2.6461 15 6 -0.8566 9.4296 0.6698 16 7 -0.7053 9.1223 -0.5999 17 14 -2.2960 10.4912 1.2087 18 1 -1.7852 11.7268 1.8547 19 1 -3.1146 10.8536 0.0239 20 1 -3.1329 9.7366 2.1759 21 6 2.0518 7.7382 2.3898 22 6 3.2503 6.8969 1.9397 23 6 2.2798 2.1208 1.0896 24 6 2.1244 1.6830 2.5232 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.9941 4.1406 -1.4096 31 1 2.4153 6.5202 -0.7534 32 1 1.5067 5.0372 -0.3630 33 1 0.0881 6.2722 1.2173 34 1 0.0627 7.1074 -0.3550 35 1 1.8231 8.6666 0.4591 36 1 -1.3413 9.4466 -1.2566 37 1 1.4448 7.1622 3.0883 38 1 2.4071 8.6452 2.8787 39 1 3.7986 6.5451 2.8136 40 1 3.9083 7.4997 1.3138 41 1 1.1180 1.9200 2.8684 42 1 2.2892 0.6080 2.5947 43 1 2.8534 2.2044 3.1434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601422486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:10 Heat of formation + Delta-G solvation = 11.101493 kcal Electronic energy + Delta-G solvation = -23903.934417 eV Core-core repulsion = 20563.552604 eV Total energy + Delta-G solvation = -3340.381813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.55475 -40.60804 -38.26190 -35.71007 -35.19858 -33.24798 -33.01537 -31.76383 -30.46256 -28.60316 -27.70516 -25.22377 -24.76701 -23.80853 -22.99201 -21.48936 -20.74505 -19.62114 -18.58267 -18.06584 -17.26383 -16.83647 -16.49871 -16.34633 -15.82785 -15.54928 -15.11889 -14.76156 -14.69238 -14.59230 -14.18731 -14.10892 -13.96245 -13.68302 -13.38645 -13.25565 -13.20489 -13.00110 -12.82533 -12.74805 -12.46320 -12.26655 -12.12047 -11.93693 -11.82129 -11.45034 -10.97484 -10.95007 -10.73462 -10.40577 -10.29340 -9.67185 -9.38125 -8.05891 -6.19263 0.57878 1.18775 1.41094 1.43503 1.43737 1.51312 2.02725 2.37397 2.45572 3.20496 3.45616 3.59524 3.87238 3.97615 4.06935 4.15865 4.19786 4.31775 4.34672 4.40693 4.50286 4.52165 4.61449 4.62063 4.73419 4.75444 4.83145 4.91893 4.95929 5.00774 5.06562 5.21771 5.23047 5.27217 5.40886 5.46120 5.61449 5.68800 5.95620 6.01080 6.14429 6.41153 6.53437 6.58682 6.90220 7.26042 7.48249 8.97269 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.004261 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.530940 B = 6569.726694 C = 7259.210239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.355 5.355 4 N -0.318 5.318 5 C 0.082 3.918 6 C -0.318 4.318 7 C 0.594 3.406 8 O -0.587 6.587 9 N -0.598 5.598 10 C 0.115 3.885 11 C -0.112 4.112 12 C 0.046 3.954 13 C -0.536 4.536 14 H 0.048 0.952 15 C 0.018 3.982 16 N -0.912 5.912 17 Si 0.948 3.052 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.276 1.276 21 C -0.112 4.112 22 C 0.118 3.882 23 C 0.148 3.852 24 C -0.098 4.098 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.201 0.799 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.006 0.994 36 H 0.261 0.739 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -18.563 0.863 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.136 5.136 4 N -0.138 5.138 5 C -0.104 4.104 6 C -0.332 4.332 7 C 0.384 3.616 8 O -0.469 6.469 9 N -0.329 5.329 10 C -0.007 4.007 11 C -0.150 4.150 12 C 0.028 3.972 13 C -0.574 4.574 14 H 0.066 0.934 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.774 3.226 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.201 1.201 21 C -0.150 4.150 22 C -0.004 4.004 23 C 0.014 3.986 24 C -0.156 4.156 25 H 0.126 0.874 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.126 0.874 29 H 0.143 0.857 30 H 0.217 0.783 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.012 -19.534 0.168 19.942 hybrid contribution -0.778 1.667 0.601 1.935 sum 3.234 -17.867 0.769 18.174 Atomic orbital electron populations 1.22170 0.93407 1.04624 1.02230 1.22202 0.95940 0.75688 1.06625 1.48854 1.49228 1.13120 1.02369 1.77090 1.23224 1.04764 1.08687 1.24231 0.96801 0.95916 0.93488 1.19982 1.22690 0.96320 0.94231 1.17569 0.78230 0.82182 0.83601 1.90652 1.42608 1.85138 1.28493 1.48060 1.47656 1.05575 1.31592 1.22077 0.90970 1.00373 0.87263 1.21839 0.96417 0.95786 1.00991 1.18608 0.93511 0.92653 0.92476 1.21538 1.10803 1.31425 0.93651 0.93406 1.25629 1.00083 0.97307 0.95038 1.69945 1.37605 1.46160 1.01432 0.85773 0.79708 0.79473 0.77650 1.19820 1.20863 1.20115 1.21840 0.96049 0.98390 0.98755 1.21616 0.96180 0.86349 0.96234 1.21752 0.94487 0.89962 0.92361 1.20710 1.04443 1.03868 0.86563 0.87437 0.92435 0.93515 0.87404 0.85703 0.78277 0.91136 0.89348 0.96006 0.90445 0.97586 0.92962 0.94150 0.91574 0.89843 0.90876 0.88942 0.87321 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 71.98 0.74 -1.33 16 2 C 0.11 1.51 6.93 86.38 0.60 2.11 16 3 N -0.36 -8.30 3.58 -333.01 -1.19 -9.49 16 4 N -0.32 -9.00 12.50 -56.27 -0.70 -9.70 16 5 C 0.08 2.39 9.63 85.65 0.82 3.22 16 6 C -0.32 -10.05 5.19 -20.15 -0.10 -10.16 16 7 C 0.59 21.76 7.43 86.66 0.64 22.41 16 8 O -0.59 -23.80 15.11 -4.06 -0.06 -23.86 16 9 N -0.60 -22.08 2.97 -821.92 -2.44 -24.52 16 10 C 0.12 4.27 5.52 86.51 0.48 4.75 16 11 C -0.11 -5.14 5.17 30.82 0.16 -4.98 16 12 C 0.05 2.25 2.06 -11.51 -0.02 2.23 16 13 C -0.54 -29.23 8.56 25.60 0.22 -29.01 16 14 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 15 C 0.02 1.00 5.30 84.66 0.45 1.45 16 16 N -0.91 -50.97 11.30 21.45 0.24 -50.73 16 17 Si 0.95 43.13 29.54 68.60 2.03 45.15 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.11 -4.68 5.30 30.67 0.16 -4.52 16 22 C 0.12 4.35 6.44 86.36 0.56 4.91 16 23 C 0.15 3.87 7.00 42.14 0.30 4.16 16 24 C -0.10 -1.94 9.92 71.23 0.71 -1.24 16 25 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.13 0.90 7.02 -2.39 -0.02 0.88 16 30 H 0.20 5.06 7.37 -2.91 -0.02 5.04 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.09 3.02 4.77 -2.39 -0.01 3.01 16 33 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 3.98 6.03 -2.39 -0.01 3.96 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.08 3.01 7.00 -2.39 -0.02 3.00 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.11 1.29 7.05 -2.39 -0.02 1.27 16 43 H 0.08 2.06 6.74 -2.39 -0.02 2.05 16 Total: -1.00 -68.01 342.60 4.58 -63.44 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.00 Total: 15.71 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.70 Total: -6.00 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -4.09 Total: -94.44 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.01 4.58 -63.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.541 kcal (2) G-P(sol) polarization free energy of solvation -68.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds