Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47159 * 2 1 4 4 N 1.39945 * 125.74984 * 269.99866 * 3 2 1 5 5 C 1.30447 * 108.89496 * 180.02562 * 4 3 2 6 6 C 1.41300 * 108.02489 * 359.97438 * 5 4 3 7 7 C 1.47422 * 126.41351 * 179.97438 * 6 5 4 8 8 O 1.21601 * 119.99903 * 216.90014 * 7 6 5 9 9 N 1.34770 * 120.00337 * 36.90785 * 7 6 5 10 10 C 1.46929 * 120.62816 * 5.62644 * 9 7 6 11 11 C 1.53625 * 108.54307 * 126.37375 * 10 9 7 12 12 C 1.53042 * 109.24209 * 54.85639 * 11 10 9 13 13 C 1.53042 * 109.53567 * 298.50850 * 12 11 10 14 14 H 1.08990 * 109.49989 * 301.41603 * 13 12 11 15 15 C 1.50702 * 109.49690 * 181.31742 * 13 12 11 16 16 H 1.08011 * 119.99515 * 0.16241 * 15 13 12 17 17 C 1.37874 * 120.00407 * 180.16646 * 15 13 12 18 18 N 1.31515 * 119.99508 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00280 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46910 * 89.99851 * 19 17 15 21 21 H 1.48496 * 109.47127 * 209.99951 * 19 17 15 22 22 H 1.48500 * 109.47051 * 330.00052 * 19 17 15 23 23 C 1.46925 * 120.63750 * 185.91086 * 9 7 6 24 24 C 1.34257 * 125.75663 * 89.99843 * 3 2 1 25 25 C 1.50697 * 126.29266 * 0.26308 * 24 3 2 26 26 H 1.09002 * 109.47135 * 300.00070 * 1 2 3 27 27 H 1.08996 * 109.46804 * 60.00394 * 1 2 3 28 28 H 1.09009 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47182 * 239.99427 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00138 * 2 1 3 31 31 H 1.08000 * 125.98723 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.58683 * 246.20282 * 10 9 7 33 33 H 1.08994 * 109.58989 * 6.62965 * 10 9 7 34 34 H 1.09002 * 109.63423 * 294.86512 * 11 10 9 35 35 H 1.09002 * 109.45967 * 174.74104 * 11 10 9 36 36 H 1.09009 * 109.45661 * 178.49253 * 12 11 10 37 37 H 1.08991 * 109.44640 * 58.52763 * 12 11 10 38 38 H 0.97006 * 119.99931 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58126 * 353.36840 * 23 9 7 40 40 H 1.08996 * 109.58868 * 113.79386 * 23 9 7 41 41 H 1.09005 * 109.46723 * 269.69277 * 25 24 3 42 42 H 1.09001 * 109.47021 * 29.68700 * 25 24 3 43 43 H 1.08997 * 109.46985 * 149.69030 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2909 2.1520 -1.1358 5 6 2.7076 3.3289 -0.7575 6 6 2.7170 3.3562 0.6552 7 6 3.1192 4.4910 1.5059 8 8 3.7185 4.2897 2.5446 9 7 2.8226 5.7515 1.1325 10 6 1.9938 6.0054 -0.0539 11 6 0.8219 6.9112 0.3536 12 6 1.3695 8.1756 1.0196 13 6 2.1447 7.7940 2.2828 14 1 1.4865 7.2561 2.9650 15 6 2.6561 9.0418 2.9553 16 1 2.4469 10.0108 2.5265 17 6 3.3911 8.9467 4.1179 18 7 3.6463 7.7667 4.6397 19 14 4.0257 10.4934 4.9512 20 1 3.0151 10.9819 5.9235 21 1 5.2916 10.1876 5.6645 22 1 4.2745 11.5404 3.9278 23 6 3.3270 6.8981 1.9002 24 6 2.2798 2.1208 1.0895 25 6 2.1302 1.6811 2.5231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9950 4.1402 -1.4099 32 1 2.5925 6.4999 -0.8189 33 1 1.6104 5.0613 -0.4407 34 1 0.1761 6.3816 1.0541 35 1 0.2497 7.1855 -0.5326 36 1 0.5420 8.8332 1.2861 37 1 2.0347 8.6914 0.3272 38 1 4.1631 7.6997 5.4579 39 1 3.8236 6.5431 2.8033 40 1 4.0322 7.4639 1.2914 41 1 1.1257 1.9190 2.8731 42 1 2.2938 0.6057 2.5922 43 1 2.8628 2.2006 3.1408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = 31.800393 kcal Electronic energy + Delta-G solvation = -24032.853614 eV Core-core repulsion = 20693.369373 eV Total energy + Delta-G solvation = -3339.484241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39810 -38.90001 -36.47375 -34.77770 -33.25512 -32.09525 -31.65340 -30.08316 -29.27781 -27.29857 -25.08546 -24.65850 -23.85616 -21.82483 -21.66042 -20.17745 -19.28433 -18.13840 -17.00382 -16.21613 -15.92873 -15.39045 -15.06408 -14.61166 -14.44795 -14.13303 -14.03146 -13.50345 -13.23506 -13.10400 -12.98039 -12.61569 -12.57084 -12.44853 -12.33687 -12.02335 -11.94500 -11.72707 -11.58343 -10.94395 -10.84299 -10.72602 -10.43938 -10.32776 -10.16700 -9.80908 -9.31119 -9.19612 -9.04524 -8.80503 -8.37334 -8.35377 -7.59080 -5.94174 -4.02999 1.73186 2.35288 2.45550 3.33810 3.41298 3.43664 3.70111 4.03377 4.34965 4.47388 4.62665 4.69074 4.83678 4.91734 5.09586 5.24807 5.35471 5.36667 5.44153 5.48714 5.56279 5.60491 5.68045 5.74050 5.80832 5.95073 6.08224 6.16648 6.28768 6.39285 6.52970 6.68469 6.77090 6.93955 6.94782 7.05335 7.25632 7.42474 7.65938 7.71818 7.95386 8.07521 8.40491 8.46043 8.99607 9.07998 9.62289 11.10801 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.004139 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.713754 B = 6763.499728 C = 7311.049447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.365 5.365 4 N -0.305 5.305 5 C 0.080 3.920 6 C -0.280 4.280 7 C 0.584 3.416 8 O -0.541 6.541 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.132 4.132 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.115 3.885 24 C 0.142 3.858 25 C -0.101 4.101 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.189 0.811 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.263 0.737 39 H 0.123 0.877 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 -14.342 -9.992 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.146 5.146 4 N -0.125 5.125 5 C -0.107 4.107 6 C -0.294 4.294 7 C 0.371 3.629 8 O -0.419 6.419 9 N -0.332 5.332 10 C -0.020 4.020 11 C -0.171 4.171 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.006 4.006 24 C 0.011 3.989 25 C -0.160 4.160 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.206 0.794 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.694 -15.423 -10.291 19.396 hybrid contribution 0.456 1.409 0.946 1.757 sum -5.238 -14.014 -9.345 17.640 Atomic orbital electron populations 1.22187 0.94134 1.03042 1.03475 1.21694 0.95363 0.77962 1.04467 1.48441 1.50743 1.12052 1.03365 1.77096 1.23227 1.04501 1.07628 1.24055 0.97378 0.95304 0.93976 1.20257 1.19010 0.96377 0.93775 1.17260 0.79289 0.81890 0.84461 1.90749 1.42274 1.84489 1.24420 1.48299 1.50264 1.06355 1.28323 1.21932 0.92532 0.99508 0.88047 1.22007 0.97058 0.98013 0.99979 1.21629 0.99363 0.94990 0.98823 1.18957 0.92719 0.94809 0.91395 0.95363 1.21089 1.34334 0.92306 1.08210 0.92446 1.25046 0.96032 0.95892 0.97020 1.69900 1.38993 1.22251 1.20520 0.86616 0.78353 0.83525 0.79634 1.20753 1.21211 1.19943 1.22252 0.98029 0.84168 0.96108 1.21411 0.95952 0.90621 0.90903 1.20664 1.04849 1.01568 0.88870 0.91820 0.91516 0.90484 0.88608 0.88837 0.79444 0.92224 0.90447 0.92313 0.92444 0.93184 0.93218 0.92721 0.85913 0.94090 0.89934 0.91239 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.13 1.05 6.93 -4.04 -0.03 1.02 16 3 N -0.36 -4.69 3.58 -56.60 -0.20 -4.89 16 4 N -0.30 -4.41 12.50 30.86 0.39 -4.02 16 5 C 0.08 1.17 9.58 -16.98 -0.16 1.01 16 6 C -0.28 -4.77 5.31 -105.06 -0.56 -5.33 16 7 C 0.58 12.28 7.47 -12.52 -0.09 12.18 16 8 O -0.54 -13.38 14.95 5.28 0.08 -13.30 16 9 N -0.60 -12.42 2.97 -173.77 -0.52 -12.93 16 10 C 0.10 1.70 5.40 -3.48 -0.02 1.68 16 11 C -0.13 -2.23 6.10 -26.39 -0.16 -2.39 16 12 C -0.11 -2.24 5.10 -26.69 -0.14 -2.37 16 13 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.52 -14.21 8.56 -34.44 -0.29 -14.51 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -25.73 11.39 55.43 0.63 -25.10 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.11 2.81 5.41 -3.71 -0.02 2.79 16 24 C 0.14 2.09 7.00 -81.60 -0.57 1.52 16 25 C -0.10 -1.27 9.91 36.00 0.36 -0.91 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.59 7.01 -51.93 -0.36 0.22 16 31 H 0.19 2.32 7.08 -52.49 -0.37 1.95 16 32 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.08 1.13 4.60 -51.93 -0.24 0.89 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 3.51 5.11 -51.93 -0.27 3.24 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.64 7.04 -51.93 -0.37 0.27 16 43 H 0.11 1.67 6.63 -51.93 -0.34 1.33 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -33.03 342.04 -7.66 -40.69 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.56 Total: 1.77 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.61 Total: -3.69 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.30 Total: -46.95 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.03 -7.66 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.492 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds