Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47159 * 2 1 4 4 N 1.39945 * 125.74984 * 269.99866 * 3 2 1 5 5 C 1.30447 * 108.89496 * 180.02562 * 4 3 2 6 6 C 1.41300 * 108.02489 * 359.97438 * 5 4 3 7 7 C 1.47422 * 126.41351 * 179.97438 * 6 5 4 8 8 O 1.21601 * 119.99903 * 216.90014 * 7 6 5 9 9 N 1.34770 * 120.00337 * 36.90785 * 7 6 5 10 10 C 1.46929 * 120.62816 * 5.62644 * 9 7 6 11 11 C 1.53625 * 108.54307 * 126.37375 * 10 9 7 12 12 C 1.53042 * 109.24209 * 54.85639 * 11 10 9 13 13 C 1.53042 * 109.53567 * 298.50850 * 12 11 10 14 14 H 1.08990 * 109.49989 * 301.41603 * 13 12 11 15 15 C 1.50702 * 109.49690 * 181.31742 * 13 12 11 16 16 H 1.08011 * 119.99515 * 0.16241 * 15 13 12 17 17 C 1.37874 * 120.00407 * 180.16646 * 15 13 12 18 18 N 1.31515 * 119.99508 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00280 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46910 * 89.99851 * 19 17 15 21 21 H 1.48496 * 109.47127 * 209.99951 * 19 17 15 22 22 H 1.48500 * 109.47051 * 330.00052 * 19 17 15 23 23 C 1.46925 * 120.63750 * 185.91086 * 9 7 6 24 24 C 1.34257 * 125.75663 * 89.99843 * 3 2 1 25 25 C 1.50697 * 126.29266 * 0.26308 * 24 3 2 26 26 H 1.09002 * 109.47135 * 300.00070 * 1 2 3 27 27 H 1.08996 * 109.46804 * 60.00394 * 1 2 3 28 28 H 1.09009 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47182 * 239.99427 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00138 * 2 1 3 31 31 H 1.08000 * 125.98723 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.58683 * 246.20282 * 10 9 7 33 33 H 1.08994 * 109.58989 * 6.62965 * 10 9 7 34 34 H 1.09002 * 109.63423 * 294.86512 * 11 10 9 35 35 H 1.09002 * 109.45967 * 174.74104 * 11 10 9 36 36 H 1.09009 * 109.45661 * 178.49253 * 12 11 10 37 37 H 1.08991 * 109.44640 * 58.52763 * 12 11 10 38 38 H 0.97006 * 119.99931 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58126 * 353.36840 * 23 9 7 40 40 H 1.08996 * 109.58868 * 113.79386 * 23 9 7 41 41 H 1.09005 * 109.46723 * 269.69277 * 25 24 3 42 42 H 1.09001 * 109.47021 * 29.68700 * 25 24 3 43 43 H 1.08997 * 109.46985 * 149.69030 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2909 2.1520 -1.1358 5 6 2.7076 3.3289 -0.7575 6 6 2.7170 3.3562 0.6552 7 6 3.1192 4.4910 1.5059 8 8 3.7185 4.2897 2.5446 9 7 2.8226 5.7515 1.1325 10 6 1.9938 6.0054 -0.0539 11 6 0.8219 6.9112 0.3536 12 6 1.3695 8.1756 1.0196 13 6 2.1447 7.7940 2.2828 14 1 1.4865 7.2561 2.9650 15 6 2.6561 9.0418 2.9553 16 1 2.4469 10.0108 2.5265 17 6 3.3911 8.9467 4.1179 18 7 3.6463 7.7667 4.6397 19 14 4.0257 10.4934 4.9512 20 1 3.0151 10.9819 5.9235 21 1 5.2916 10.1876 5.6645 22 1 4.2745 11.5404 3.9278 23 6 3.3270 6.8981 1.9002 24 6 2.2798 2.1208 1.0895 25 6 2.1302 1.6811 2.5231 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9950 4.1402 -1.4099 32 1 2.5925 6.4999 -0.8189 33 1 1.6104 5.0613 -0.4407 34 1 0.1761 6.3816 1.0541 35 1 0.2497 7.1855 -0.5326 36 1 0.5420 8.8332 1.2861 37 1 2.0347 8.6914 0.3272 38 1 4.1631 7.6997 5.4579 39 1 3.8236 6.5431 2.8033 40 1 4.0322 7.4639 1.2914 41 1 1.1257 1.9190 2.8731 42 1 2.2938 0.6057 2.5922 43 1 2.8628 2.2006 3.1408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = 10.702813 kcal Electronic energy + Delta-G solvation = -24033.768474 eV Core-core repulsion = 20693.369373 eV Total energy + Delta-G solvation = -3340.399101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54320 -40.49877 -38.18091 -35.74638 -35.10065 -33.38489 -33.15938 -31.65339 -30.48204 -28.48279 -26.99172 -26.15851 -24.79029 -23.41371 -23.04826 -21.44485 -20.72242 -19.58842 -18.58359 -17.93738 -17.18856 -16.76683 -16.50178 -16.27154 -15.70688 -15.56866 -15.18002 -14.86191 -14.68380 -14.53775 -14.21110 -14.04672 -13.97434 -13.65876 -13.43697 -13.32691 -13.22787 -12.87587 -12.83871 -12.61172 -12.26283 -12.23597 -12.18175 -11.83138 -11.80134 -11.58885 -11.05870 -10.91648 -10.63641 -10.48400 -10.30180 -9.62716 -9.25760 -8.07156 -6.24636 0.57467 1.21528 1.40148 1.42611 1.43476 1.54140 2.17956 2.43155 2.51375 3.20494 3.48377 3.59709 3.93680 3.97833 4.08260 4.12379 4.18949 4.20418 4.35670 4.37620 4.49604 4.58899 4.62891 4.74016 4.78197 4.83516 4.84665 4.90098 4.97000 5.08664 5.11752 5.22889 5.28404 5.30123 5.37518 5.46299 5.59384 5.71883 5.94118 5.94735 6.04389 6.37000 6.54766 6.77877 6.88235 7.43061 7.46932 8.96085 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.004139 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.713754 B = 6763.499728 C = 7311.049447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.353 5.353 4 N -0.311 5.311 5 C 0.085 3.915 6 C -0.313 4.313 7 C 0.579 3.421 8 O -0.593 6.593 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.039 3.961 14 H -0.016 1.016 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.914 5.914 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.262 1.262 23 C 0.128 3.872 24 C 0.146 3.854 25 C -0.099 4.099 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.209 0.791 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.259 0.741 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -15.289 -12.237 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.134 5.134 4 N -0.131 5.131 5 C -0.102 4.102 6 C -0.328 4.328 7 C 0.368 3.632 8 O -0.475 6.475 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.163 4.163 12 C -0.142 4.142 13 C 0.020 3.980 14 H 0.002 0.998 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.552 5.552 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.186 1.186 23 C 0.006 3.994 24 C 0.013 3.987 25 C -0.157 4.157 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.226 0.774 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.915 -16.383 -12.600 21.794 hybrid contribution 0.776 1.592 1.641 2.415 sum -6.139 -14.791 -10.959 19.405 Atomic orbital electron populations 1.22157 0.93041 1.04650 1.02375 1.22211 0.96239 0.75654 1.06481 1.48823 1.49235 1.13106 1.02235 1.77071 1.23225 1.04435 1.08354 1.24290 0.96924 0.96045 0.92919 1.19997 1.22229 0.96033 0.94528 1.17860 0.78298 0.82799 0.84201 1.90712 1.44578 1.85294 1.26946 1.48300 1.50652 1.05391 1.29208 1.22243 0.92123 1.00965 0.86726 1.21973 0.97232 0.96051 1.01076 1.21514 0.98967 0.96896 0.96807 1.18889 0.92573 0.93699 0.92846 0.99797 1.21518 1.34067 0.93316 1.08589 0.91998 1.25890 0.96350 0.98804 0.97868 1.70105 1.39824 1.24554 1.20759 0.85565 0.77551 0.79904 0.78701 1.20157 1.21336 1.18624 1.21683 0.97573 0.85264 0.94892 1.21637 0.94730 0.90170 0.92149 1.20675 1.04285 1.03609 0.87135 0.92554 0.92923 0.87534 0.87193 0.86311 0.77413 0.89684 0.88109 0.93721 0.88028 0.93068 0.92204 0.93167 0.90437 0.94413 0.88938 0.87295 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.24 71.98 0.74 -1.09 16 2 C 0.11 1.49 6.93 86.38 0.60 2.09 16 3 N -0.35 -8.24 3.58 -333.00 -1.19 -9.43 16 4 N -0.31 -8.25 12.50 -56.27 -0.70 -8.95 16 5 C 0.08 2.34 9.58 85.65 0.82 3.16 16 6 C -0.31 -10.60 5.31 -20.15 -0.11 -10.70 16 7 C 0.58 25.29 7.47 86.66 0.65 25.93 16 8 O -0.59 -31.42 14.95 -4.04 -0.06 -31.48 16 9 N -0.60 -25.57 2.97 -821.96 -2.44 -28.01 16 10 C 0.10 3.14 5.40 86.51 0.47 3.61 16 11 C -0.13 -3.98 6.10 30.82 0.19 -3.79 16 12 C -0.10 -4.15 5.10 30.62 0.16 -3.99 16 13 C 0.04 2.03 2.25 -11.46 -0.03 2.00 16 14 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 15 C -0.54 -30.03 8.56 25.60 0.22 -29.81 16 16 H 0.06 3.32 7.74 -2.90 -0.02 3.30 16 17 C 0.01 0.59 5.30 84.65 0.45 1.04 16 18 N -0.91 -56.30 11.39 21.45 0.24 -56.06 16 19 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.13 6.58 5.41 86.36 0.47 7.05 16 24 C 0.15 4.15 7.00 42.14 0.29 4.45 16 25 C -0.10 -2.42 9.91 71.24 0.71 -1.71 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.12 1.00 7.01 -2.39 -0.02 0.98 16 31 H 0.21 4.60 7.08 -2.91 -0.02 4.58 16 32 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.10 2.70 4.60 -2.39 -0.01 2.69 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 39 H 0.08 4.74 5.11 -2.39 -0.01 4.73 16 40 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.11 1.72 7.04 -2.39 -0.02 1.70 16 43 H 0.07 2.38 6.63 -2.39 -0.02 2.36 16 Total: -1.00 -77.48 342.04 4.50 -72.98 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.00 Total: 15.97 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.62 Total: -1.77 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -4.09 Total: -102.45 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.48 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -77.48 4.50 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.684 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds