Wall clock time and date at job start Tue Mar 31 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46814 * 2 1 4 4 N 1.39934 * 125.75249 * 90.02353 * 3 2 1 5 5 C 1.30448 * 108.89698 * 179.97438 * 4 3 2 6 6 C 1.41295 * 108.02284 * 359.97438 * 5 4 3 7 7 C 1.47428 * 126.41347 * 179.97438 * 6 5 4 8 8 O 1.21603 * 119.99614 * 130.21949 * 7 6 5 9 9 N 1.34779 * 120.00171 * 310.21193 * 7 6 5 10 10 C 1.46927 * 120.62739 * 4.02969 * 9 7 6 11 11 C 1.52770 * 109.00255 * 233.57826 * 10 9 7 12 12 C 1.53034 * 109.38483 * 305.58741 * 11 10 9 13 13 C 1.53045 * 109.53783 * 61.23873 * 12 11 10 14 14 H 1.09004 * 109.49559 * 58.58837 * 13 12 11 15 15 C 1.50701 * 109.52468 * 178.66645 * 13 12 11 16 16 H 1.08003 * 120.00219 * 359.85903 * 15 13 12 17 17 C 1.37876 * 120.00207 * 179.86052 * 15 13 12 18 18 N 1.31517 * 119.99605 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00341 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47256 * 59.99649 * 19 17 15 21 21 H 1.48495 * 109.47389 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47057 * 300.00108 * 19 17 15 23 23 C 1.46918 * 120.63034 * 184.30005 * 9 7 6 24 24 C 1.34257 * 125.75167 * 269.71975 * 3 2 1 25 25 C 1.50693 * 126.29657 * 0.02562 * 24 3 2 26 26 H 1.09000 * 109.47694 * 60.00383 * 1 2 3 27 27 H 1.09007 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47245 * 299.99594 * 1 2 3 29 29 H 1.09001 * 109.47457 * 120.00111 * 2 1 3 30 30 H 1.08996 * 109.47245 * 240.00405 * 2 1 3 31 31 H 1.07996 * 125.98809 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.58696 * 353.41014 * 10 9 7 33 33 H 1.08998 * 109.58667 * 113.84486 * 10 9 7 34 34 H 1.09001 * 109.56141 * 185.55210 * 11 10 9 35 35 H 1.08995 * 109.38241 * 65.51861 * 11 10 9 36 36 H 1.09004 * 109.46056 * 301.22289 * 12 11 10 37 37 H 1.08999 * 109.45324 * 181.25897 * 12 11 10 38 38 H 0.97008 * 120.00053 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.59264 * 246.15888 * 23 9 7 40 40 H 1.09003 * 109.58646 * 6.44545 * 23 9 7 41 41 H 1.09000 * 109.47228 * 90.02697 * 25 24 3 42 42 H 1.08994 * 109.47711 * 210.02802 * 25 24 3 43 43 H 1.09001 * 109.47173 * 330.02814 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2912 2.1520 1.1356 5 6 2.7077 3.3289 0.7574 6 6 2.7176 3.3559 -0.6553 7 6 3.1189 4.4911 -1.5061 8 8 3.9120 4.3213 -2.4120 9 7 2.6066 5.7170 -1.2798 10 6 1.7159 5.9567 -0.1361 11 6 0.4239 6.5992 -0.6378 12 6 0.7613 7.8542 -1.4459 13 6 1.6134 7.4691 -2.6575 14 1 1.0687 6.7525 -3.2723 15 6 1.9180 8.7006 -3.4710 16 1 1.5398 9.6623 -3.1571 17 6 2.6796 8.5996 -4.6159 18 7 3.1405 7.4285 -4.9978 19 14 3.0578 10.1261 -5.6238 20 1 3.7988 11.1021 -4.7850 21 1 3.8877 9.7517 -6.7969 22 1 1.7878 10.7383 -6.0905 23 6 2.9233 6.8377 -2.1755 24 6 2.2847 2.1191 -1.0896 25 6 2.1360 1.6790 -2.5231 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 2.9953 4.1402 1.4097 32 1 1.4858 5.0099 0.3525 33 1 2.2030 6.6269 0.5722 34 1 -0.2023 6.8711 0.2120 35 1 -0.1100 5.8911 -1.2713 36 1 1.3164 8.5518 -0.8186 37 1 -0.1607 8.3260 -1.7856 38 1 3.6767 7.3575 -5.8031 39 1 3.5108 7.5812 -1.6370 40 1 3.4917 6.4724 -3.0309 41 1 1.1316 1.9162 -2.8737 42 1 2.8685 2.1988 -3.1407 43 1 2.3004 0.6037 -2.5920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:12 Heat of formation + Delta-G solvation = 30.414808 kcal Electronic energy + Delta-G solvation = -24090.217887 eV Core-core repulsion = 20750.673562 eV Total energy + Delta-G solvation = -3339.544324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37973 -38.91572 -36.50085 -34.74925 -33.26243 -32.10750 -31.66701 -30.08324 -29.31398 -27.29317 -25.07440 -24.66867 -23.84915 -21.80372 -21.68579 -20.17313 -19.28269 -18.11354 -17.02765 -16.24156 -15.95049 -15.37911 -15.06175 -14.61254 -14.47470 -14.13053 -14.00943 -13.54897 -13.24819 -13.10395 -13.03514 -12.59656 -12.56534 -12.43849 -12.35232 -12.01216 -11.90278 -11.73962 -11.57312 -10.94228 -10.85572 -10.72965 -10.47366 -10.31968 -10.17888 -9.82970 -9.30289 -9.23776 -9.06745 -8.82543 -8.38743 -8.31783 -7.61215 -5.95950 -4.04482 1.76694 2.36599 2.51758 3.34271 3.40357 3.41673 3.57139 4.01750 4.36150 4.46381 4.63460 4.70568 4.84954 4.93213 5.10039 5.25653 5.34118 5.37737 5.44257 5.48869 5.56434 5.60104 5.71781 5.75695 5.81858 5.96752 6.08615 6.14474 6.28606 6.38670 6.53990 6.67336 6.76226 6.93752 6.95459 7.03585 7.24669 7.40631 7.67269 7.69903 7.93410 8.05659 8.38927 8.44344 8.97552 9.06317 9.60835 11.09323 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004234 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.886581 B = 6611.289439 C = 7054.395060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.364 5.364 4 N -0.304 5.304 5 C 0.079 3.921 6 C -0.276 4.276 7 C 0.585 3.415 8 O -0.541 6.541 9 N -0.599 5.599 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.110 4.110 13 C 0.041 3.959 14 H 0.028 0.972 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.115 3.885 24 C 0.137 3.863 25 C -0.100 4.100 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.187 0.813 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.264 0.736 39 H 0.041 0.959 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -13.537 10.499 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.006 3.994 3 N -0.146 5.146 4 N -0.124 5.124 5 C -0.108 4.108 6 C -0.290 4.290 7 C 0.371 3.629 8 O -0.419 6.419 9 N -0.331 5.331 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.148 4.148 13 C 0.022 3.978 14 H 0.046 0.954 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.005 4.005 24 C 0.007 3.993 25 C -0.158 4.158 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.204 0.796 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.140 0.860 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.878 -14.599 10.873 18.845 hybrid contribution 0.304 1.400 -1.058 1.781 sum -4.573 -13.199 9.815 17.072 Atomic orbital electron populations 1.22184 0.94127 1.03029 1.03490 1.21689 0.95367 0.77953 1.04441 1.48406 1.50758 1.12103 1.03299 1.77077 1.23129 1.04497 1.07652 1.23950 0.97672 0.95398 0.93772 1.20217 1.18684 0.96236 0.93885 1.17281 0.80768 0.81739 0.83067 1.90759 1.34406 1.83962 1.32780 1.48344 1.46511 1.09900 1.28298 1.21682 0.91152 1.00264 0.88748 1.21855 0.96433 0.99138 0.99665 1.21626 1.00001 0.95117 0.98059 1.18959 0.91451 0.96005 0.91423 0.95412 1.21050 1.33262 0.93641 1.08029 0.92465 1.25039 0.95689 0.95880 0.97335 1.69880 1.34892 1.22721 1.24313 0.86663 0.78287 0.83361 0.79712 1.20261 1.21280 1.20340 1.22261 1.00429 0.84960 0.92896 1.21344 0.96507 0.90598 0.90882 1.20619 1.04715 1.01663 0.88827 0.91796 0.90500 0.91525 0.88636 0.88856 0.79578 0.90546 0.92235 0.92416 0.92398 0.93195 0.93168 0.92639 0.94085 0.85990 0.89844 0.87847 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.13 1.07 6.94 -4.04 -0.03 1.04 16 3 N -0.36 -4.72 3.58 -56.60 -0.20 -4.92 16 4 N -0.30 -4.40 12.50 30.86 0.39 -4.02 16 5 C 0.08 1.16 9.65 -16.98 -0.16 1.00 16 6 C -0.28 -4.72 5.12 -105.06 -0.54 -5.26 16 7 C 0.58 12.32 7.33 -12.52 -0.09 12.23 16 8 O -0.54 -13.47 15.56 5.27 0.08 -13.39 16 9 N -0.60 -12.39 2.98 -174.30 -0.52 -12.91 16 10 C 0.11 1.74 5.87 -3.93 -0.02 1.71 16 11 C -0.13 -2.23 6.06 -26.83 -0.16 -2.39 16 12 C -0.11 -2.23 5.11 -26.69 -0.14 -2.36 16 13 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.52 -14.17 8.57 -34.44 -0.29 -14.46 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -25.63 11.39 55.43 0.63 -24.99 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.11 2.81 5.39 -3.72 -0.02 2.79 16 24 C 0.14 2.04 7.01 -81.60 -0.57 1.46 16 25 C -0.10 -1.27 9.93 36.00 0.36 -0.92 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.60 7.01 -51.93 -0.36 0.24 16 31 H 0.19 2.28 7.64 -52.49 -0.40 1.88 16 32 H 0.08 1.13 4.56 -51.93 -0.24 0.89 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.12 3.48 5.15 -51.93 -0.27 3.21 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.61 7.10 -51.93 -0.37 1.24 16 43 H 0.07 0.66 7.05 -51.93 -0.37 0.29 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -32.92 343.88 -7.67 -40.59 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.62 Total: 1.76 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.59 Total: -3.56 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.30 Total: -46.85 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.92 -7.67 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.003 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds