Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46814 * 2 1 4 4 N 1.39934 * 125.75249 * 90.02353 * 3 2 1 5 5 C 1.30448 * 108.89698 * 179.97438 * 4 3 2 6 6 C 1.41295 * 108.02284 * 359.97438 * 5 4 3 7 7 C 1.47428 * 126.41347 * 179.97438 * 6 5 4 8 8 O 1.21603 * 119.99614 * 130.21949 * 7 6 5 9 9 N 1.34779 * 120.00171 * 310.21193 * 7 6 5 10 10 C 1.46927 * 120.62739 * 4.02969 * 9 7 6 11 11 C 1.52770 * 109.00255 * 233.57826 * 10 9 7 12 12 C 1.53034 * 109.38483 * 305.58741 * 11 10 9 13 13 C 1.53045 * 109.53783 * 61.23873 * 12 11 10 14 14 H 1.09004 * 109.49559 * 58.58837 * 13 12 11 15 15 C 1.50701 * 109.52468 * 178.66645 * 13 12 11 16 16 H 1.08003 * 120.00219 * 359.85903 * 15 13 12 17 17 C 1.37876 * 120.00207 * 179.86052 * 15 13 12 18 18 N 1.31517 * 119.99605 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 120.00341 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47256 * 59.99649 * 19 17 15 21 21 H 1.48495 * 109.47389 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47057 * 300.00108 * 19 17 15 23 23 C 1.46918 * 120.63034 * 184.30005 * 9 7 6 24 24 C 1.34257 * 125.75167 * 269.71975 * 3 2 1 25 25 C 1.50693 * 126.29657 * 0.02562 * 24 3 2 26 26 H 1.09000 * 109.47694 * 60.00383 * 1 2 3 27 27 H 1.09007 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47245 * 299.99594 * 1 2 3 29 29 H 1.09001 * 109.47457 * 120.00111 * 2 1 3 30 30 H 1.08996 * 109.47245 * 240.00405 * 2 1 3 31 31 H 1.07996 * 125.98809 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.58696 * 353.41014 * 10 9 7 33 33 H 1.08998 * 109.58667 * 113.84486 * 10 9 7 34 34 H 1.09001 * 109.56141 * 185.55210 * 11 10 9 35 35 H 1.08995 * 109.38241 * 65.51861 * 11 10 9 36 36 H 1.09004 * 109.46056 * 301.22289 * 12 11 10 37 37 H 1.08999 * 109.45324 * 181.25897 * 12 11 10 38 38 H 0.97008 * 120.00053 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.59264 * 246.15888 * 23 9 7 40 40 H 1.09003 * 109.58646 * 6.44545 * 23 9 7 41 41 H 1.09000 * 109.47228 * 90.02697 * 25 24 3 42 42 H 1.08994 * 109.47711 * 210.02802 * 25 24 3 43 43 H 1.09001 * 109.47173 * 330.02814 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2912 2.1520 1.1356 5 6 2.7077 3.3289 0.7574 6 6 2.7176 3.3559 -0.6553 7 6 3.1189 4.4911 -1.5061 8 8 3.9120 4.3213 -2.4120 9 7 2.6066 5.7170 -1.2798 10 6 1.7159 5.9567 -0.1361 11 6 0.4239 6.5992 -0.6378 12 6 0.7613 7.8542 -1.4459 13 6 1.6134 7.4691 -2.6575 14 1 1.0687 6.7525 -3.2723 15 6 1.9180 8.7006 -3.4710 16 1 1.5398 9.6623 -3.1571 17 6 2.6796 8.5996 -4.6159 18 7 3.1405 7.4285 -4.9978 19 14 3.0578 10.1261 -5.6238 20 1 3.7988 11.1021 -4.7850 21 1 3.8877 9.7517 -6.7969 22 1 1.7878 10.7383 -6.0905 23 6 2.9233 6.8377 -2.1755 24 6 2.2847 2.1191 -1.0896 25 6 2.1360 1.6790 -2.5231 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 2.9953 4.1402 1.4097 32 1 1.4858 5.0099 0.3525 33 1 2.2030 6.6269 0.5722 34 1 -0.2023 6.8711 0.2120 35 1 -0.1100 5.8911 -1.2713 36 1 1.3164 8.5518 -0.8186 37 1 -0.1607 8.3260 -1.7856 38 1 3.6767 7.3575 -5.8031 39 1 3.5108 7.5812 -1.6370 40 1 3.4917 6.4724 -3.0309 41 1 1.1316 1.9162 -2.8737 42 1 2.8685 2.1988 -3.1407 43 1 2.3004 0.6037 -2.5920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = 9.510833 kcal Electronic energy + Delta-G solvation = -24091.124351 eV Core-core repulsion = 20750.673562 eV Total energy + Delta-G solvation = -3340.450789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.53171 -40.52368 -38.21422 -35.71237 -35.12118 -33.39489 -33.18255 -31.67903 -30.50122 -28.48710 -26.98911 -26.17615 -24.77538 -23.40723 -23.07784 -21.43248 -20.71378 -19.58295 -18.60684 -17.94242 -17.27748 -16.77469 -16.50268 -16.23254 -15.71477 -15.57103 -15.20563 -14.90614 -14.70606 -14.53981 -14.21431 -14.09002 -13.98746 -13.59015 -13.46191 -13.34645 -13.22226 -12.84930 -12.82513 -12.64399 -12.28230 -12.23930 -12.21516 -11.84154 -11.79442 -11.60723 -11.09167 -10.92857 -10.66081 -10.48552 -10.30792 -9.59439 -9.29025 -8.08073 -6.25123 0.61482 1.26710 1.40600 1.42952 1.44664 1.52641 2.03411 2.42084 2.49806 3.20031 3.49336 3.59016 3.93316 3.97598 4.08653 4.11764 4.18143 4.19795 4.35821 4.38658 4.51132 4.56896 4.62264 4.74189 4.78668 4.83759 4.84249 4.89966 4.96746 5.04801 5.11186 5.23133 5.27233 5.29548 5.37961 5.45787 5.58587 5.69919 5.92890 5.95009 6.02678 6.36179 6.55818 6.75258 6.87213 7.40739 7.45595 8.95304 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004234 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.886581 B = 6611.289439 C = 7054.395060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.353 5.353 4 N -0.310 5.310 5 C 0.084 3.916 6 C -0.309 4.309 7 C 0.581 3.419 8 O -0.594 6.594 9 N -0.602 5.602 10 C 0.103 3.897 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.040 3.960 14 H -0.014 1.014 15 C -0.538 4.538 16 H 0.062 0.938 17 C 0.011 3.989 18 N -0.914 5.914 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.268 1.268 23 C 0.128 3.872 24 C 0.140 3.860 25 C -0.098 4.098 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.209 0.791 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.260 0.740 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -14.401 12.590 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.005 4.005 3 N -0.134 5.134 4 N -0.129 5.129 5 C -0.103 4.103 6 C -0.324 4.324 7 C 0.371 3.629 8 O -0.476 6.476 9 N -0.333 5.333 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.142 4.142 13 C 0.021 3.979 14 H 0.004 0.996 15 C -0.576 4.576 16 H 0.080 0.920 17 C -0.188 4.188 18 N -0.553 5.553 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.193 1.193 23 C 0.006 3.994 24 C 0.008 3.992 25 C -0.156 4.156 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.225 0.775 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.343 -15.476 13.025 21.199 hybrid contribution 0.710 1.564 -1.700 2.416 sum -5.634 -13.913 11.325 18.803 Atomic orbital electron populations 1.22153 0.93043 1.04628 1.02381 1.22204 0.96234 0.75665 1.06444 1.48784 1.49271 1.13152 1.02168 1.77052 1.23129 1.04424 1.08343 1.24206 0.97216 0.96155 0.92704 1.19962 1.21896 0.95873 0.94656 1.17868 0.79770 0.82590 0.82719 1.90718 1.36774 1.84788 1.35319 1.48350 1.47113 1.08997 1.28827 1.21985 0.90329 1.02085 0.87520 1.21816 0.97042 0.97016 1.00415 1.21514 0.99113 0.97046 0.96524 1.18887 0.91910 0.94296 0.92822 0.99565 1.21488 1.32948 0.94614 1.08551 0.91989 1.25877 0.95593 0.98685 0.98657 1.70083 1.35668 1.24983 1.24560 0.85623 0.78327 0.79768 0.78026 1.19291 1.21443 1.19316 1.21698 0.99642 0.85839 0.92214 1.21556 0.95400 0.90167 0.92099 1.20633 1.04079 1.03719 0.87157 0.92583 0.87560 0.92890 0.87197 0.86375 0.77458 0.88189 0.89928 0.88064 0.93609 0.92312 0.92964 0.93124 0.94647 0.90477 0.88948 0.91347 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.24 71.98 0.74 -1.14 16 2 C 0.11 1.53 6.94 86.38 0.60 2.12 16 3 N -0.35 -8.31 3.58 -333.00 -1.19 -9.51 16 4 N -0.31 -8.25 12.50 -56.27 -0.70 -8.95 16 5 C 0.08 2.32 9.65 85.65 0.83 3.14 16 6 C -0.31 -10.51 5.12 -20.15 -0.10 -10.61 16 7 C 0.58 25.44 7.33 86.66 0.64 26.07 16 8 O -0.59 -31.64 15.56 -4.04 -0.06 -31.71 16 9 N -0.60 -25.49 2.98 -823.62 -2.45 -27.94 16 10 C 0.10 3.21 5.87 86.22 0.51 3.71 16 11 C -0.12 -3.94 6.06 30.53 0.19 -3.75 16 12 C -0.10 -4.13 5.11 30.62 0.16 -3.97 16 13 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 14 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 15 C -0.54 -29.94 8.57 25.60 0.22 -29.72 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 17 C 0.01 0.65 5.30 84.65 0.45 1.09 16 18 N -0.91 -55.97 11.39 21.45 0.24 -55.72 16 19 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 C 0.13 6.59 5.39 86.36 0.47 7.05 16 24 C 0.14 4.03 7.01 42.14 0.30 4.33 16 25 C -0.10 -2.44 9.93 71.23 0.71 -1.73 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 1.03 7.01 -2.39 -0.02 1.02 16 31 H 0.21 4.57 7.64 -2.91 -0.02 4.55 16 32 H 0.10 2.70 4.56 -2.39 -0.01 2.69 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 4.71 5.15 -2.39 -0.01 4.70 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.24 7.10 -2.39 -0.02 2.23 16 43 H 0.11 1.79 7.05 -2.39 -0.02 1.77 16 Total: -1.00 -76.94 343.88 4.51 -72.42 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 1.00 Total: 16.21 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.65 Total: -1.36 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -4.10 Total: -102.12 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.06 Total: -31.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -76.94 4.51 -72.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.935 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds