Wall clock time and date at job start Tue Mar 31 2020 07:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99684 * 2 1 4 4 C 1.39707 * 119.99846 * 179.97438 * 2 1 3 5 5 C 1.38985 * 120.45848 * 359.97438 * 4 2 1 6 6 N 1.31781 * 120.81051 * 180.02562 * 5 4 2 7 7 C 1.31819 * 121.87185 * 359.97438 * 6 5 4 8 8 C 1.38903 * 120.82517 * 0.02562 * 7 6 5 9 9 N 1.39949 * 120.45067 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00521 * 145.07148 * 9 8 7 11 11 O 1.21290 * 119.99566 * 4.67527 * 10 9 8 12 12 C 1.50699 * 120.00407 * 184.67530 * 10 9 8 13 13 C 1.52995 * 109.47296 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47194 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47255 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47039 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00643 * 359.97438 * 16 15 14 18 18 C 1.37887 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99644 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46778 * 90.00686 * 20 18 16 22 22 H 1.48504 * 109.46930 * 210.00168 * 20 18 16 23 23 H 1.48500 * 109.47483 * 330.00178 * 20 18 16 24 24 C 1.39136 * 120.45254 * 179.97438 * 4 2 1 25 25 H 1.08995 * 109.47116 * 270.00442 * 1 2 3 26 26 H 1.08999 * 109.46843 * 30.00104 * 1 2 3 27 27 H 1.08999 * 109.46947 * 149.99791 * 1 2 3 28 28 H 1.09002 * 109.46748 * 269.99694 * 3 2 1 29 29 H 1.08997 * 109.47610 * 29.99609 * 3 2 1 30 30 H 1.09004 * 109.46986 * 150.00530 * 3 2 1 31 31 H 1.08002 * 119.59174 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.58964 * 179.97438 * 7 6 5 33 33 H 0.97001 * 119.99615 * 325.07470 * 9 8 7 34 34 H 1.09003 * 109.47051 * 300.00260 * 12 10 9 35 35 H 1.09004 * 109.47047 * 60.00055 * 12 10 9 36 36 H 1.09003 * 109.47432 * 300.00209 * 13 12 10 37 37 H 1.09004 * 109.46879 * 60.00134 * 13 12 10 38 38 H 1.09001 * 109.47295 * 299.99902 * 14 13 12 39 39 H 1.08996 * 109.47343 * 59.99891 * 14 13 12 40 40 H 1.09001 * 109.46542 * 299.99939 * 15 14 13 41 41 H 1.08996 * 109.47380 * 59.99490 * 15 14 13 42 42 H 0.96993 * 120.00048 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.85252 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 1.4783 -2.4191 0.0016 6 7 2.1301 -3.5644 0.0026 7 6 3.4473 -3.6155 0.0022 8 6 4.2049 -2.4513 0.0011 9 7 5.6029 -2.5148 0.0012 10 6 6.3196 -1.5900 -0.6679 11 8 5.7580 -0.6553 -1.1990 12 6 7.8186 -1.7174 -0.7562 13 6 8.3831 -0.5476 -1.5647 14 6 9.9049 -0.6773 -1.6549 15 6 10.4695 0.4929 -2.4629 16 6 11.9685 0.3655 -2.5512 17 1 12.4686 -0.4666 -2.0780 18 6 12.7016 1.3113 -3.2362 19 7 12.0928 2.3248 -3.8120 20 14 14.5598 1.1537 -3.3450 21 1 14.9198 0.3633 -4.5495 22 1 15.1664 2.5058 -3.4407 23 1 15.0703 0.4670 -2.1313 24 6 3.5549 -1.2209 0.0000 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5137 30 1 3.1500 1.1384 0.5138 31 1 0.3983 -2.4200 0.0025 32 1 3.9437 -4.5747 0.0035 33 1 6.0561 -3.2244 0.4828 34 1 8.2441 -1.7049 0.2473 35 1 8.0752 -2.6558 -1.2479 36 1 7.9576 -0.5606 -2.5682 37 1 8.1265 0.3910 -1.0734 38 1 10.3308 -0.6645 -0.6516 39 1 10.1611 -1.6158 -2.1464 40 1 10.0437 0.4805 -3.4662 41 1 10.2133 1.4312 -1.9711 42 1 12.6085 2.9904 -4.2935 43 1 4.1161 -0.2982 -0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601718718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:25 Heat of formation + Delta-G solvation = -7.616599 kcal Electronic energy + Delta-G solvation = -22117.514853 eV Core-core repulsion = 18776.321363 eV Total energy + Delta-G solvation = -3341.193490 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.99454 -39.50604 -37.10083 -35.31408 -34.81055 -32.71146 -31.53850 -30.41438 -29.49506 -28.43568 -25.79843 -25.39659 -23.71159 -22.41040 -21.44184 -20.36877 -20.03082 -18.18425 -17.26748 -16.93406 -16.39445 -16.16874 -15.73755 -15.63938 -15.43687 -14.56208 -14.49401 -14.20657 -13.95656 -13.65867 -13.40464 -12.94537 -12.71217 -12.63391 -12.45790 -12.31899 -11.94878 -11.75382 -11.63815 -11.01679 -10.96374 -10.63355 -10.58620 -10.52413 -10.45485 -10.21675 -9.64566 -9.56372 -9.23948 -9.00749 -8.63715 -8.32240 -7.64412 -5.97040 -3.99575 0.99535 1.29348 2.53051 2.69388 2.93348 3.32947 3.39068 3.42111 3.74333 4.43630 4.47448 4.58960 4.66193 4.78644 4.80067 4.88381 5.00586 5.13660 5.15633 5.24672 5.28238 5.30197 5.32605 5.38473 5.50989 5.73366 5.83264 5.87206 6.07072 6.08150 6.23602 6.46696 6.52327 6.78816 6.83103 6.96376 7.04430 7.15376 7.20614 7.71891 7.87259 7.89357 8.02019 8.04291 8.45843 9.08140 9.64202 11.14319 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002390 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.988951 B =11714.340574 C =12545.755325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.630 5.630 3 C 0.091 3.909 4 C 0.184 3.816 5 C 0.002 3.998 6 N -0.428 5.428 7 C 0.011 3.989 8 C 0.149 3.851 9 N -0.676 5.676 10 C 0.512 3.488 11 O -0.514 6.514 12 C -0.137 4.137 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.164 4.164 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.414 0.586 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.682 -8.802 11.144 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.341 5.341 3 C -0.052 4.052 4 C 0.078 3.922 5 C -0.161 4.161 6 N -0.135 5.135 7 C -0.151 4.151 8 C 0.051 3.949 9 N -0.322 5.322 10 C 0.301 3.699 11 O -0.388 6.388 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.250 0.750 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.553 -8.540 10.625 27.214 hybrid contribution 1.747 0.471 0.074 1.811 sum -21.806 -8.068 10.699 25.595 Atomic orbital electron populations 1.21679 0.79098 1.02940 1.01333 1.46299 1.05104 1.02992 1.79722 1.21699 0.97215 0.84408 1.01865 1.18780 0.91482 0.87259 0.94632 1.22225 0.99921 0.86104 1.07891 1.67428 1.09021 1.28297 1.08739 1.22263 0.89400 0.96707 1.06712 1.18612 0.83836 0.94296 0.98127 1.43685 1.03996 1.31930 1.52624 1.21401 0.90785 0.81126 0.76541 1.90702 1.72356 1.31023 1.44687 1.21832 0.88986 1.03161 1.03709 1.21475 0.97223 0.95854 0.99641 1.21651 0.91717 1.00971 1.00460 1.19094 0.95195 0.92489 0.94948 1.21278 0.92424 1.08971 1.33208 0.92733 1.25046 0.98488 0.95397 0.95655 1.69968 1.35521 1.12717 1.35283 0.86609 0.85792 0.77277 0.78394 1.20690 1.21254 1.19909 1.21261 0.92236 0.98932 1.07172 0.93106 0.91211 0.91161 0.92770 0.91325 0.91150 0.83072 0.82947 0.74975 0.88662 0.88588 0.91695 0.91732 0.93396 0.93375 0.96598 0.96603 0.93027 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.20 59.85 0.61 1.17 16 2 N -0.63 -5.88 3.41 -187.44 -0.64 -6.52 16 3 C 0.09 0.78 10.21 59.85 0.61 1.39 16 4 C 0.18 2.10 6.56 -83.66 -0.55 1.55 16 5 C 0.00 0.02 10.38 -17.30 -0.18 -0.16 16 6 N -0.43 -5.15 10.35 -12.91 -0.13 -5.28 16 7 C 0.01 0.13 11.12 -17.31 -0.19 -0.07 16 8 C 0.15 1.75 6.32 -83.57 -0.53 1.22 16 9 N -0.68 -6.83 5.35 -9.78 -0.05 -6.88 16 10 C 0.51 6.70 7.69 -10.99 -0.08 6.61 16 11 O -0.51 -8.69 13.46 5.55 0.07 -8.61 16 12 C -0.14 -1.66 5.70 -27.89 -0.16 -1.82 16 13 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 14 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.16 -2.09 7.93 -38.91 -0.31 -2.40 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 27 H 0.07 0.38 6.22 -51.93 -0.32 0.06 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.07 0.66 6.25 -51.93 -0.32 0.33 16 31 H 0.15 1.28 6.15 -52.49 -0.32 0.96 16 32 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.41 2.64 8.83 -40.82 -0.36 2.28 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.15 2.11 4.52 -52.49 -0.24 1.87 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -34.98 355.57 -7.86 -42.83 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.59 Total: -0.97 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.59 Total: -10.03 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.09 Total: -45.33 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.98 -7.86 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601718718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.216 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds