Wall clock time and date at job start Tue Mar 31 2020 07:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99684 * 2 1 4 4 C 1.39707 * 119.99846 * 179.97438 * 2 1 3 5 5 C 1.38985 * 120.45848 * 359.97438 * 4 2 1 6 6 N 1.31781 * 120.81051 * 180.02562 * 5 4 2 7 7 C 1.31819 * 121.87185 * 359.97438 * 6 5 4 8 8 C 1.38903 * 120.82517 * 0.02562 * 7 6 5 9 9 N 1.39949 * 120.45067 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00521 * 145.07148 * 9 8 7 11 11 O 1.21290 * 119.99566 * 4.67527 * 10 9 8 12 12 C 1.50699 * 120.00407 * 184.67530 * 10 9 8 13 13 C 1.52995 * 109.47296 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47194 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.47255 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47039 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00643 * 359.97438 * 16 15 14 18 18 C 1.37887 * 119.99721 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00179 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99644 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46778 * 90.00686 * 20 18 16 22 22 H 1.48504 * 109.46930 * 210.00168 * 20 18 16 23 23 H 1.48500 * 109.47483 * 330.00178 * 20 18 16 24 24 C 1.39136 * 120.45254 * 179.97438 * 4 2 1 25 25 H 1.08995 * 109.47116 * 270.00442 * 1 2 3 26 26 H 1.08999 * 109.46843 * 30.00104 * 1 2 3 27 27 H 1.08999 * 109.46947 * 149.99791 * 1 2 3 28 28 H 1.09002 * 109.46748 * 269.99694 * 3 2 1 29 29 H 1.08997 * 109.47610 * 29.99609 * 3 2 1 30 30 H 1.09004 * 109.46986 * 150.00530 * 3 2 1 31 31 H 1.08002 * 119.59174 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.58964 * 179.97438 * 7 6 5 33 33 H 0.97001 * 119.99615 * 325.07470 * 9 8 7 34 34 H 1.09003 * 109.47051 * 300.00260 * 12 10 9 35 35 H 1.09004 * 109.47047 * 60.00055 * 12 10 9 36 36 H 1.09003 * 109.47432 * 300.00209 * 13 12 10 37 37 H 1.09004 * 109.46879 * 60.00134 * 13 12 10 38 38 H 1.09001 * 109.47295 * 299.99902 * 14 13 12 39 39 H 1.08996 * 109.47343 * 59.99891 * 14 13 12 40 40 H 1.09001 * 109.46542 * 299.99939 * 15 14 13 41 41 H 1.08996 * 109.47380 * 59.99490 * 15 14 13 42 42 H 0.96993 * 120.00048 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.85252 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1636 -1.2099 0.0005 5 6 1.4783 -2.4191 0.0016 6 7 2.1301 -3.5644 0.0026 7 6 3.4473 -3.6155 0.0022 8 6 4.2049 -2.4513 0.0011 9 7 5.6029 -2.5148 0.0012 10 6 6.3196 -1.5900 -0.6679 11 8 5.7580 -0.6553 -1.1990 12 6 7.8186 -1.7174 -0.7562 13 6 8.3831 -0.5476 -1.5647 14 6 9.9049 -0.6773 -1.6549 15 6 10.4695 0.4929 -2.4629 16 6 11.9685 0.3655 -2.5512 17 1 12.4686 -0.4666 -2.0780 18 6 12.7016 1.3113 -3.2362 19 7 12.0928 2.3248 -3.8120 20 14 14.5598 1.1537 -3.3450 21 1 14.9198 0.3633 -4.5495 22 1 15.1664 2.5058 -3.4407 23 1 15.0703 0.4670 -2.1313 24 6 3.5549 -1.2209 0.0000 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5137 30 1 3.1500 1.1384 0.5138 31 1 0.3983 -2.4200 0.0025 32 1 3.9437 -4.5747 0.0035 33 1 6.0561 -3.2244 0.4828 34 1 8.2441 -1.7049 0.2473 35 1 8.0752 -2.6558 -1.2479 36 1 7.9576 -0.5606 -2.5682 37 1 8.1265 0.3910 -1.0734 38 1 10.3308 -0.6645 -0.6516 39 1 10.1611 -1.6158 -2.1464 40 1 10.0437 0.4805 -3.4662 41 1 10.2133 1.4312 -1.9711 42 1 12.6085 2.9904 -4.2935 43 1 4.1161 -0.2982 -0.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601718718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:25 Heat of formation + Delta-G solvation = -30.923545 kcal Electronic energy + Delta-G solvation = -22118.525518 eV Core-core repulsion = 18776.321363 eV Total energy + Delta-G solvation = -3342.204155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89357 -40.46098 -37.86021 -36.73217 -36.00088 -34.63692 -32.52395 -31.58235 -30.70340 -29.17935 -27.46910 -26.14119 -24.94270 -23.76784 -22.38417 -21.72880 -21.33032 -19.03271 -18.42504 -18.18224 -17.75887 -17.31780 -16.73173 -16.57260 -16.45503 -16.13451 -15.57480 -15.27470 -15.08000 -14.58207 -14.50962 -14.28171 -13.79321 -13.60504 -13.51165 -13.34809 -13.26729 -13.12212 -12.82887 -12.61822 -12.34652 -12.16365 -12.13247 -11.90619 -11.44644 -11.36385 -11.34712 -11.22362 -11.03615 -10.54875 -10.39974 -9.52103 -8.39344 -8.18826 -6.30704 0.11817 0.42549 1.40580 1.42608 1.53628 1.54578 1.91969 2.14009 2.41986 2.89662 3.14116 3.64138 3.73202 3.90951 3.97839 3.99981 4.11470 4.13956 4.15381 4.39915 4.43486 4.48048 4.65169 4.68988 4.72771 4.80475 4.84224 4.86970 4.87829 4.98677 5.06818 5.19174 5.20830 5.33774 5.38775 5.57479 5.66989 5.79033 5.88838 6.13596 6.25601 6.29130 6.38476 6.88187 7.04500 7.11166 7.38978 8.93437 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028653 B = 0.002390 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.988951 B =11714.340574 C =12545.755325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.634 5.634 3 C 0.091 3.909 4 C 0.177 3.823 5 C -0.001 4.001 6 N -0.444 5.444 7 C 0.011 3.989 8 C 0.139 3.861 9 N -0.656 5.656 10 C 0.513 3.487 11 O -0.561 6.561 12 C -0.124 4.124 13 C -0.097 4.097 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.259 1.259 24 C -0.187 4.187 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.434 0.566 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.061 0.939 40 H -0.016 1.016 41 H -0.015 1.015 42 H 0.263 0.737 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.525 -10.911 12.429 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.344 5.344 3 C -0.052 4.052 4 C 0.070 3.930 5 C -0.164 4.164 6 N -0.151 5.151 7 C -0.151 4.151 8 C 0.041 3.959 9 N -0.303 5.303 10 C 0.303 3.697 11 O -0.439 6.439 12 C -0.164 4.164 13 C -0.135 4.135 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.183 1.183 24 C -0.220 4.220 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.191 0.809 32 H 0.197 0.803 33 H 0.274 0.726 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.071 0.929 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.412 -10.692 11.948 28.376 hybrid contribution 1.606 1.185 -0.334 2.023 sum -21.806 -9.506 11.614 26.472 Atomic orbital electron populations 1.21905 0.77074 1.04067 1.02501 1.46559 1.06429 1.02451 1.78971 1.21715 0.97227 0.84937 1.01367 1.18920 0.91228 0.88369 0.94462 1.22581 1.00984 0.85633 1.07214 1.67480 1.09574 1.28766 1.09265 1.22634 0.89182 0.97390 1.05928 1.18737 0.84382 0.94325 0.98499 1.43424 1.03480 1.31635 1.51783 1.21535 0.91210 0.80837 0.76154 1.90703 1.73179 1.33072 1.46900 1.21700 0.88089 1.01815 1.04751 1.21258 0.95363 0.97531 0.99334 1.21446 0.93330 0.98522 1.00039 1.19061 0.94915 0.93932 0.94003 1.21767 0.93613 1.09321 1.33151 0.91520 1.26092 1.04310 0.94913 0.95138 1.70126 1.37806 1.13749 1.36225 0.85396 0.78796 0.77448 0.79091 1.19762 1.21009 1.18263 1.21296 0.93130 0.98844 1.08719 0.91808 0.89756 0.90429 0.93820 0.88721 0.92612 0.80853 0.80285 0.72603 0.85536 0.85676 0.93885 0.93625 0.91889 0.91987 0.99803 0.99670 0.92878 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 10.20 127.77 1.30 2.21 16 2 N -0.63 -11.54 3.41 -746.93 -2.55 -14.09 16 3 C 0.09 1.58 10.21 127.77 1.30 2.88 16 4 C 0.18 4.00 6.56 38.28 0.25 4.25 16 5 C 0.00 -0.02 10.38 84.88 0.88 0.86 16 6 N -0.44 -10.06 10.35 -194.76 -2.01 -12.07 16 7 C 0.01 0.21 11.12 84.85 0.94 1.16 16 8 C 0.14 3.15 6.32 38.22 0.24 3.39 16 9 N -0.66 -12.21 5.35 -303.25 -1.62 -13.83 16 10 C 0.51 13.02 7.69 87.66 0.67 13.69 16 11 O -0.56 -19.65 13.46 -3.06 -0.04 -19.69 16 12 C -0.12 -2.74 5.70 29.85 0.17 -2.57 16 13 C -0.10 -3.30 4.50 30.59 0.14 -3.17 16 14 C -0.10 -3.78 5.15 30.60 0.16 -3.62 16 15 C 0.02 0.98 4.97 29.85 0.15 1.12 16 16 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 17 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 18 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 19 N -0.94 -58.88 13.29 21.45 0.28 -58.60 16 20 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 C -0.19 -4.88 7.93 22.70 0.18 -4.70 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 27 H 0.08 0.70 6.22 -2.39 -0.01 0.69 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 1.11 8.07 -2.39 -0.02 1.09 16 30 H 0.06 1.13 6.25 -2.38 -0.01 1.11 16 31 H 0.17 2.63 6.15 -2.91 -0.02 2.61 16 32 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.43 4.29 8.83 -92.71 -0.82 3.47 16 34 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.63 8.10 -2.39 -0.02 1.62 16 37 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.13 3.95 4.52 -2.91 -0.01 3.94 16 Total: -1.00 -78.76 355.57 3.37 -75.39 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.19 Total: 11.59 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 7.09 Total: -15.30 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -5.90 Total: -98.59 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -78.76 3.37 -75.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601718718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.471 kcal (2) G-P(sol) polarization free energy of solvation -78.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds