Wall clock time and date at job start Tue Mar 31 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36873 * 126.39998 * 2 1 4 4 C 1.34670 * 106.81869 * 180.25234 * 3 2 1 5 5 N 1.34136 * 108.01980 * 359.73955 * 4 3 2 6 6 C 1.30501 * 109.25477 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.65194 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47300 * 195.02213 * 7 6 5 9 9 C 1.53005 * 109.46716 * 75.02716 * 7 6 5 10 10 C 1.52996 * 117.50002 * 128.75026 * 9 7 6 11 11 C 1.52994 * 117.50190 * 60.08498 * 9 7 6 12 12 N 1.46896 * 109.47365 * 315.02612 * 7 6 5 13 13 C 1.48716 * 111.01676 * 179.48417 * 12 7 6 14 14 C 1.54379 * 104.51622 * 158.96344 * 13 12 7 15 15 C 1.54260 * 105.15098 * 336.27495 * 14 13 12 16 16 O 1.42902 * 110.32596 * 118.84074 * 15 14 13 17 17 C 1.50704 * 110.32313 * 240.94543 * 15 14 13 18 18 H 1.07995 * 119.99816 * 24.93829 * 17 15 14 19 19 C 1.37869 * 120.00070 * 204.93739 * 17 15 14 20 20 N 1.31516 * 120.00065 * 173.97159 * 19 17 15 21 21 Si 1.86807 * 119.99908 * 353.96983 * 19 17 15 22 22 H 1.48497 * 109.47255 * 87.09827 * 21 19 17 23 23 H 1.48500 * 109.47100 * 207.09379 * 21 19 17 24 24 H 1.48494 * 109.47398 * 327.09340 * 21 19 17 25 25 C 1.48556 * 110.99821 * 295.00081 * 12 7 6 26 26 H 1.08999 * 109.46930 * 270.19142 * 1 2 3 27 27 H 1.09001 * 109.46451 * 30.18712 * 1 2 3 28 28 H 1.08992 * 109.47310 * 150.18985 * 1 2 3 29 29 H 1.08004 * 126.59662 * 359.97058 * 3 2 1 30 30 H 1.07998 * 125.99523 * 179.76294 * 4 3 2 31 31 H 1.09000 * 115.54745 * 274.41722 * 9 7 6 32 32 H 1.09005 * 117.49956 * 359.97438 * 10 9 7 33 33 H 1.09002 * 117.50187 * 145.01863 * 10 9 7 34 34 H 1.08992 * 117.50184 * 214.97940 * 11 9 7 35 35 H 1.08998 * 117.49934 * 0.02562 * 11 9 7 36 36 H 1.09005 * 110.38641 * 40.24565 * 13 12 7 37 37 H 1.08994 * 110.51251 * 277.75427 * 13 12 7 38 38 H 1.08998 * 110.32712 * 217.32077 * 14 13 12 39 39 H 1.09005 * 110.32106 * 95.21790 * 14 13 12 40 40 H 0.96706 * 114.00139 * 56.18403 * 16 15 14 41 41 H 0.97002 * 119.99926 * 179.97438 * 20 19 17 42 42 H 1.09001 * 110.41437 * 82.18046 * 25 12 7 43 43 H 1.09000 * 110.40966 * 319.73191 * 25 12 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6503 -0.0057 5 7 3.5096 -0.6905 -0.0033 6 6 2.2663 -1.0871 0.0032 7 6 1.8017 -2.5207 0.0072 8 1 0.7442 -2.5607 -0.2541 9 6 2.0056 -3.1189 1.4006 10 6 0.8107 -3.8192 2.0506 11 6 1.2735 -2.4551 2.5685 12 7 2.5780 -3.2899 -0.9744 13 6 2.1550 -4.7155 -0.9901 14 6 2.6221 -5.2427 -2.3638 15 6 2.7259 -3.9924 -3.2614 16 8 4.0688 -3.8193 -3.7182 17 6 1.7864 -4.1104 -4.4339 18 1 0.9088 -4.7357 -4.3618 19 6 2.0471 -3.4201 -5.5984 20 7 1.2954 -3.6137 -6.6601 21 14 3.4683 -2.2096 -5.6684 22 1 4.7139 -2.9294 -6.0364 23 1 3.1804 -1.1666 -6.6855 24 1 3.6401 -1.5706 -4.3391 25 6 2.3113 -2.8129 -2.3558 26 1 -0.3633 0.0034 1.0277 27 1 -0.3632 0.8883 -0.5168 28 1 -0.3633 -0.8916 -0.5108 29 1 1.9615 2.1345 -0.0004 30 1 4.4369 1.2609 -0.0109 31 1 2.9965 -3.5291 1.5956 32 1 -0.1210 -3.8534 1.4857 33 1 1.0154 -4.6899 2.6736 34 1 1.7825 -2.4290 3.5320 35 1 0.6462 -1.5924 2.3442 36 1 1.0711 -4.7909 -0.9026 37 1 2.6414 -5.2671 -0.1857 38 1 1.8905 -5.9409 -2.7702 39 1 3.5953 -5.7253 -2.2731 40 1 4.4268 -4.5857 -4.1868 41 1 1.4787 -3.1278 -7.4793 42 1 2.9151 -1.9329 -2.5775 43 1 1.2519 -2.5901 -2.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602697349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:42 Heat of formation + Delta-G solvation = 59.602856 kcal Electronic energy + Delta-G solvation = -24797.069740 eV Core-core repulsion = 21458.791104 eV Total energy + Delta-G solvation = -3338.278636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.92922 -38.93651 -37.24403 -34.86903 -33.84942 -32.25921 -31.36441 -28.81177 -28.10153 -27.02929 -25.93116 -23.93240 -22.42192 -21.55650 -21.23685 -20.59523 -19.30337 -18.94861 -17.49252 -17.01856 -16.29792 -15.60492 -15.07933 -14.86429 -14.61894 -14.33349 -14.08166 -13.86868 -13.34185 -13.21677 -12.92885 -12.80729 -12.68811 -12.58513 -12.01206 -11.76903 -11.67046 -11.55980 -11.15305 -11.01939 -10.73224 -10.49309 -10.32225 -10.12382 -10.02698 -9.89766 -9.57233 -9.37576 -9.06818 -8.52603 -8.36902 -8.15498 -7.86800 -6.13010 -4.24171 2.20995 2.85734 3.44116 3.54714 3.60052 3.75069 3.82344 4.26191 4.58578 4.59530 4.68599 4.81063 4.88106 4.96172 5.02189 5.09835 5.13881 5.24423 5.37304 5.40378 5.50161 5.55058 5.59617 5.66021 5.75377 5.81246 5.92708 6.00502 6.02383 6.22230 6.30453 6.40654 6.44847 6.64699 6.71910 6.87451 6.97207 7.14245 7.27437 7.33464 7.57451 7.71483 8.22947 8.45422 8.77210 8.93805 9.51078 10.95696 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.006450 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.021797 B = 4339.709757 C = 5168.201458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.462 5.462 3 C -0.067 4.067 4 C -0.031 4.031 5 N -0.457 5.457 6 C 0.228 3.772 7 C 0.193 3.807 8 H 0.049 0.951 9 C -0.128 4.128 10 C -0.178 4.178 11 C -0.176 4.176 12 N -0.488 5.488 13 C 0.043 3.957 14 C -0.141 4.141 15 C 0.226 3.774 16 O -0.557 6.557 17 C -0.555 4.555 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.893 5.893 21 Si 0.945 3.055 22 H -0.291 1.291 23 H -0.329 1.329 24 H -0.266 1.266 25 C 0.052 3.948 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.366 0.634 41 H 0.265 0.735 42 H 0.079 0.921 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 4.643 16.878 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.145 5.145 3 C -0.200 4.200 4 C -0.180 4.180 5 N -0.174 5.174 6 C -0.035 4.035 7 C 0.082 3.918 8 H 0.066 0.934 9 C -0.148 4.148 10 C -0.215 4.215 11 C -0.214 4.214 12 N -0.213 5.213 13 C -0.085 4.085 14 C -0.180 4.180 15 C 0.186 3.814 16 O -0.364 6.364 17 C -0.592 4.592 18 H 0.095 0.905 19 C -0.131 4.131 20 N -0.529 5.529 21 Si 0.780 3.220 22 H -0.219 1.219 23 H -0.261 1.261 24 H -0.192 1.192 25 C -0.075 4.075 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.187 0.813 30 H 0.183 0.817 31 H 0.137 0.863 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.213 0.787 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.764 4.815 17.129 17.880 hybrid contribution -1.007 0.808 -0.693 1.465 sum -2.771 5.623 16.436 17.590 Atomic orbital electron populations 1.22042 0.77359 1.04849 1.03115 1.45285 1.07216 1.06714 1.55313 1.22573 0.91562 0.92168 1.13687 1.22348 0.96163 0.91685 1.07807 1.70315 1.18259 1.10887 1.17939 1.22857 0.85757 0.89872 1.05008 1.19492 0.94460 0.85227 0.92603 0.93379 1.22159 0.97945 1.03168 0.91493 1.23079 0.98507 0.95947 1.03946 1.22873 1.04015 0.96005 0.98475 1.65443 1.50063 1.01562 1.04201 1.22998 0.97620 0.89364 0.98481 1.23053 1.01014 0.99608 0.94309 1.19804 0.80364 0.89586 0.91686 1.86180 1.31245 1.43087 1.75931 1.21408 1.10492 1.30724 0.96569 0.90545 1.25138 0.96902 0.96139 0.94941 1.69981 1.39662 1.41253 1.01966 0.85747 0.80644 0.79251 0.76313 1.21876 1.26088 1.19186 1.23443 0.98627 0.99882 0.85594 0.90765 0.89541 0.89596 0.81267 0.81689 0.86303 0.88959 0.88490 0.88754 0.89672 0.94532 0.90945 0.91014 0.91835 0.78652 0.92613 0.90252 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.93 59.85 0.65 1.34 16 2 N -0.46 -6.52 3.15 -121.28 -0.38 -6.90 16 3 C -0.07 -0.91 11.58 -16.56 -0.19 -1.10 16 4 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 5 N -0.46 -8.72 11.24 -10.81 -0.12 -8.84 16 6 C 0.23 3.88 5.59 -155.41 -0.87 3.01 16 7 C 0.19 3.12 1.84 -68.86 -0.13 2.99 16 8 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 9 C -0.13 -1.73 4.39 -90.62 -0.40 -2.13 16 10 C -0.18 -1.89 10.18 -26.69 -0.27 -2.16 16 11 C -0.18 -1.95 9.87 -26.69 -0.26 -2.21 16 12 N -0.49 -9.37 5.17 -223.27 -1.16 -10.53 16 13 C 0.04 0.74 5.72 -2.09 -0.01 0.73 16 14 C -0.14 -2.77 6.40 -25.35 -0.16 -2.94 16 15 C 0.23 5.30 0.90 -90.39 -0.08 5.22 16 16 O -0.56 -13.27 8.38 -35.23 -0.30 -13.56 16 17 C -0.55 -15.18 8.58 -34.44 -0.30 -15.47 16 18 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 19 C 0.07 2.11 5.46 -17.82 -0.10 2.01 16 20 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 21 Si 0.94 24.88 24.85 -169.99 -4.22 20.66 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.33 -8.82 7.11 56.52 0.40 -8.41 16 24 H -0.27 -7.19 5.24 56.52 0.30 -6.89 16 25 C 0.05 1.17 4.66 -2.18 -0.01 1.16 16 26 H 0.07 0.57 7.77 -51.93 -0.40 0.17 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.88 6.91 -51.93 -0.36 0.52 16 29 H 0.17 1.64 8.06 -52.48 -0.42 1.21 16 30 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.12 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.92 7.77 -51.93 -0.40 0.51 16 36 H 0.04 0.60 7.98 -51.93 -0.41 0.19 16 37 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 38 H 0.07 1.41 7.57 -51.93 -0.39 1.02 16 39 H 0.06 1.16 7.98 -51.93 -0.41 0.75 16 40 H 0.37 7.62 8.99 45.56 0.41 8.03 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 2.04 6.39 -51.93 -0.33 1.71 16 43 H 0.05 1.06 7.61 -51.93 -0.40 0.66 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -34.50 340.34 -8.67 -43.17 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.06 Total: 7.47 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.34 Total: -10.25 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.89 Total: -52.61 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.30 Total: -13.56 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.22 Total: 20.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.50 -8.67 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.770 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds