Wall clock time and date at job start Tue Mar 31 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36873 * 126.39998 * 2 1 4 4 C 1.34670 * 106.81869 * 180.25234 * 3 2 1 5 5 N 1.34136 * 108.01980 * 359.73955 * 4 3 2 6 6 C 1.30501 * 109.25477 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.65194 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47300 * 195.02213 * 7 6 5 9 9 C 1.53005 * 109.46716 * 75.02716 * 7 6 5 10 10 C 1.52996 * 117.50002 * 128.75026 * 9 7 6 11 11 C 1.52994 * 117.50190 * 60.08498 * 9 7 6 12 12 N 1.46896 * 109.47365 * 315.02612 * 7 6 5 13 13 C 1.48716 * 111.01676 * 179.48417 * 12 7 6 14 14 C 1.54379 * 104.51622 * 158.96344 * 13 12 7 15 15 C 1.54260 * 105.15098 * 336.27495 * 14 13 12 16 16 O 1.42902 * 110.32596 * 118.84074 * 15 14 13 17 17 C 1.50704 * 110.32313 * 240.94543 * 15 14 13 18 18 H 1.07995 * 119.99816 * 24.93829 * 17 15 14 19 19 C 1.37869 * 120.00070 * 204.93739 * 17 15 14 20 20 N 1.31516 * 120.00065 * 173.97159 * 19 17 15 21 21 Si 1.86807 * 119.99908 * 353.96983 * 19 17 15 22 22 H 1.48497 * 109.47255 * 87.09827 * 21 19 17 23 23 H 1.48500 * 109.47100 * 207.09379 * 21 19 17 24 24 H 1.48494 * 109.47398 * 327.09340 * 21 19 17 25 25 C 1.48556 * 110.99821 * 295.00081 * 12 7 6 26 26 H 1.08999 * 109.46930 * 270.19142 * 1 2 3 27 27 H 1.09001 * 109.46451 * 30.18712 * 1 2 3 28 28 H 1.08992 * 109.47310 * 150.18985 * 1 2 3 29 29 H 1.08004 * 126.59662 * 359.97058 * 3 2 1 30 30 H 1.07998 * 125.99523 * 179.76294 * 4 3 2 31 31 H 1.09000 * 115.54745 * 274.41722 * 9 7 6 32 32 H 1.09005 * 117.49956 * 359.97438 * 10 9 7 33 33 H 1.09002 * 117.50187 * 145.01863 * 10 9 7 34 34 H 1.08992 * 117.50184 * 214.97940 * 11 9 7 35 35 H 1.08998 * 117.49934 * 0.02562 * 11 9 7 36 36 H 1.09005 * 110.38641 * 40.24565 * 13 12 7 37 37 H 1.08994 * 110.51251 * 277.75427 * 13 12 7 38 38 H 1.08998 * 110.32712 * 217.32077 * 14 13 12 39 39 H 1.09005 * 110.32106 * 95.21790 * 14 13 12 40 40 H 0.96706 * 114.00139 * 56.18403 * 16 15 14 41 41 H 0.97002 * 119.99926 * 179.97438 * 20 19 17 42 42 H 1.09001 * 110.41437 * 82.18046 * 25 12 7 43 43 H 1.09000 * 110.40966 * 319.73191 * 25 12 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6503 -0.0057 5 7 3.5096 -0.6905 -0.0033 6 6 2.2663 -1.0871 0.0032 7 6 1.8017 -2.5207 0.0072 8 1 0.7442 -2.5607 -0.2541 9 6 2.0056 -3.1189 1.4006 10 6 0.8107 -3.8192 2.0506 11 6 1.2735 -2.4551 2.5685 12 7 2.5780 -3.2899 -0.9744 13 6 2.1550 -4.7155 -0.9901 14 6 2.6221 -5.2427 -2.3638 15 6 2.7259 -3.9924 -3.2614 16 8 4.0688 -3.8193 -3.7182 17 6 1.7864 -4.1104 -4.4339 18 1 0.9088 -4.7357 -4.3618 19 6 2.0471 -3.4201 -5.5984 20 7 1.2954 -3.6137 -6.6601 21 14 3.4683 -2.2096 -5.6684 22 1 4.7139 -2.9294 -6.0364 23 1 3.1804 -1.1666 -6.6855 24 1 3.6401 -1.5706 -4.3391 25 6 2.3113 -2.8129 -2.3558 26 1 -0.3633 0.0034 1.0277 27 1 -0.3632 0.8883 -0.5168 28 1 -0.3633 -0.8916 -0.5108 29 1 1.9615 2.1345 -0.0004 30 1 4.4369 1.2609 -0.0109 31 1 2.9965 -3.5291 1.5956 32 1 -0.1210 -3.8534 1.4857 33 1 1.0154 -4.6899 2.6736 34 1 1.7825 -2.4290 3.5320 35 1 0.6462 -1.5924 2.3442 36 1 1.0711 -4.7909 -0.9026 37 1 2.6414 -5.2671 -0.1857 38 1 1.8905 -5.9409 -2.7702 39 1 3.5953 -5.7253 -2.2731 40 1 4.4268 -4.5857 -4.1868 41 1 1.4787 -3.1278 -7.4793 42 1 2.9151 -1.9329 -2.5775 43 1 1.2519 -2.5901 -2.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602697349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:42 Heat of formation + Delta-G solvation = 33.539689 kcal Electronic energy + Delta-G solvation = -24798.199923 eV Core-core repulsion = 21458.791104 eV Total energy + Delta-G solvation = -3339.408819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.04823 -40.44516 -38.51705 -36.43838 -34.89030 -34.46189 -32.75161 -30.27257 -29.76464 -28.04354 -27.38339 -25.66881 -23.28609 -22.66640 -22.57809 -21.88435 -21.02323 -20.13513 -19.49755 -18.13336 -17.63200 -17.09785 -16.74704 -16.24657 -15.88119 -15.65086 -15.44646 -15.35611 -14.74171 -14.58847 -14.34645 -14.24233 -13.86306 -13.75113 -13.59488 -13.46836 -13.06776 -12.93301 -12.63572 -12.42634 -12.38948 -12.19553 -11.94184 -11.72620 -11.29852 -11.14268 -11.05520 -10.76389 -10.68757 -10.48448 -10.29835 -9.38365 -9.26788 -8.39021 -6.49359 1.11974 1.40506 1.44364 1.68578 1.87044 2.25303 2.40585 2.79416 2.94224 3.02847 3.47426 3.58767 3.80007 3.87169 3.89947 3.95217 4.04256 4.14699 4.18062 4.29114 4.32118 4.42332 4.53592 4.57700 4.58133 4.63876 4.76342 4.80556 4.86328 4.98821 5.01062 5.06332 5.17820 5.23131 5.24900 5.34237 5.40766 5.45409 5.86548 5.93393 6.06463 6.07885 6.31495 6.58283 7.03492 7.30267 7.31588 8.73555 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.006450 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.021797 B = 4339.709757 C = 5168.201458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.462 5.462 3 C -0.050 4.050 4 C -0.067 4.067 5 N -0.506 5.506 6 C 0.206 3.794 7 C 0.196 3.804 8 H 0.054 0.946 9 C -0.150 4.150 10 C -0.157 4.157 11 C -0.165 4.165 12 N -0.498 5.498 13 C 0.051 3.949 14 C -0.136 4.136 15 C 0.217 3.783 16 O -0.567 6.567 17 C -0.544 4.544 18 H 0.050 0.950 19 C 0.032 3.968 20 N -0.933 5.933 21 Si 0.998 3.002 22 H -0.281 1.281 23 H -0.336 1.336 24 H -0.279 1.279 25 C 0.069 3.931 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.210 0.790 30 H 0.178 0.822 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.378 0.622 41 H 0.266 0.734 42 H 0.044 0.956 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 4.924 19.181 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.145 5.145 3 C -0.183 4.183 4 C -0.215 4.215 5 N -0.224 5.224 6 C -0.057 4.057 7 C 0.085 3.915 8 H 0.072 0.928 9 C -0.170 4.170 10 C -0.194 4.194 11 C -0.202 4.202 12 N -0.223 5.223 13 C -0.077 4.077 14 C -0.175 4.175 15 C 0.177 3.823 16 O -0.376 6.376 17 C -0.582 4.582 18 H 0.068 0.932 19 C -0.168 4.168 20 N -0.572 5.572 21 Si 0.834 3.166 22 H -0.208 1.208 23 H -0.269 1.269 24 H -0.206 1.206 25 C -0.059 4.059 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.227 0.773 30 H 0.196 0.804 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.227 0.773 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.416 5.073 19.448 20.243 hybrid contribution -0.849 0.740 -1.355 1.762 sum -3.265 5.813 18.093 19.282 Atomic orbital electron populations 1.22361 0.74919 1.05607 1.05166 1.45543 1.08762 1.06106 1.54097 1.23175 0.90709 0.93594 1.10812 1.22760 0.98057 0.91124 1.09597 1.70196 1.20028 1.12756 1.19425 1.22948 0.85921 0.90792 1.06084 1.19553 0.94039 0.84865 0.93018 0.92801 1.21976 0.98473 1.05649 0.90863 1.23176 0.97120 0.96285 1.02802 1.22928 1.03127 0.96563 0.97627 1.65347 1.51547 1.02694 1.02664 1.23019 0.98538 0.88352 0.97753 1.22944 1.02032 0.97739 0.94736 1.19841 0.79341 0.92092 0.91016 1.86136 1.31099 1.44192 1.76136 1.21669 1.10045 1.28826 0.97702 0.93180 1.25699 0.98639 0.97494 0.95013 1.70064 1.41498 1.42904 1.02688 0.84878 0.79052 0.77555 0.75104 1.20807 1.26891 1.20604 1.22998 0.96896 0.98006 0.88027 0.88033 0.87401 0.90300 0.77284 0.80442 0.87829 0.88253 0.86784 0.87848 0.89255 0.93437 0.88291 0.91276 0.90250 0.77300 0.92520 0.93743 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 10.93 127.77 1.40 2.44 16 2 N -0.46 -12.26 3.15 -537.61 -1.69 -13.96 16 3 C -0.05 -1.24 11.58 83.09 0.96 -0.28 16 4 C -0.07 -2.12 11.87 83.52 0.99 -1.13 16 5 N -0.51 -19.41 11.24 -188.12 -2.11 -21.52 16 6 C 0.21 6.87 5.59 138.12 0.77 7.64 16 7 C 0.20 6.10 1.84 44.17 0.08 6.19 16 8 H 0.05 1.59 6.32 -2.39 -0.02 1.58 16 9 C -0.15 -3.77 4.39 -10.80 -0.05 -3.82 16 10 C -0.16 -2.81 10.18 30.62 0.31 -2.49 16 11 C -0.16 -3.19 9.87 30.62 0.30 -2.88 16 12 N -0.50 -18.76 5.17 -860.31 -4.45 -23.21 16 13 C 0.05 1.65 5.72 86.42 0.49 2.14 16 14 C -0.14 -5.16 6.40 31.49 0.20 -4.96 16 15 C 0.22 10.17 0.90 -10.64 -0.01 10.16 16 16 O -0.57 -26.74 8.38 -148.98 -1.25 -27.98 16 17 C -0.54 -30.20 8.58 25.60 0.22 -29.98 16 18 H 0.05 3.00 7.84 -2.91 -0.02 2.98 16 19 C 0.03 1.84 5.46 84.65 0.46 2.30 16 20 N -0.93 -57.71 13.96 21.44 0.30 -57.41 16 21 Si 1.00 52.35 24.85 68.60 1.71 54.06 16 22 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.34 -17.86 7.11 99.48 0.71 -17.15 16 24 H -0.28 -15.21 5.24 99.48 0.52 -14.69 16 25 C 0.07 3.14 4.66 86.45 0.40 3.54 16 26 H 0.10 1.19 7.77 -2.39 -0.02 1.18 16 27 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.48 6.91 -2.39 -0.02 1.46 16 29 H 0.21 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.18 4.70 8.06 -2.91 -0.02 4.68 16 31 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.10 1.67 8.05 -2.38 -0.02 1.65 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.65 7.77 -2.39 -0.02 1.63 16 36 H 0.05 1.45 7.98 -2.38 -0.02 1.43 16 37 H 0.10 2.74 7.98 -2.39 -0.02 2.72 16 38 H 0.07 2.64 7.57 -2.39 -0.02 2.62 16 39 H 0.08 2.74 7.98 -2.38 -0.02 2.72 16 40 H 0.38 15.39 8.99 -74.05 -0.67 14.73 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.04 2.33 6.39 -2.39 -0.02 2.32 16 43 H 0.03 1.55 7.61 -2.39 -0.02 1.53 16 Total: -1.00 -76.52 340.34 -0.81 -77.33 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.15 Total: 23.82 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 6.54 Total: -11.13 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -7.96 Total: -116.10 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -1.25 Total: -27.98 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 1.71 Total: 54.06 kcal Total: -76.52 -0.81 -77.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.872 kcal (2) G-P(sol) polarization free energy of solvation -76.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds