Wall clock time and date at job start Tue Mar 31 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36886 * 126.39262 * 2 1 4 4 C 1.34664 * 106.81556 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.02206 * 359.79144 * 4 3 2 6 6 C 1.30502 * 109.25382 * 0.35847 * 5 4 3 7 7 C 1.50701 * 125.64805 * 179.89567 * 6 5 4 8 8 H 1.09002 * 109.47060 * 164.69731 * 7 6 5 9 9 C 1.53002 * 109.47419 * 284.69812 * 7 6 5 10 10 C 1.53005 * 117.49643 * 8.74372 * 9 7 6 11 11 C 1.53002 * 117.49437 * 300.08898 * 9 7 6 12 12 N 1.46901 * 109.46921 * 44.69550 * 7 6 5 13 13 C 1.47851 * 110.99806 * 180.84102 * 12 7 6 14 14 C 1.54908 * 104.79527 * 213.63658 * 13 12 7 15 15 C 1.55141 * 101.65117 * 37.07238 * 14 13 12 16 16 O 1.42897 * 110.70754 * 82.73127 * 15 14 13 17 17 C 1.50699 * 110.70354 * 205.96320 * 15 14 13 18 18 H 1.07996 * 120.00257 * 113.60331 * 17 15 14 19 19 C 1.37879 * 120.00158 * 293.59457 * 17 15 14 20 20 N 1.31519 * 119.99723 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00389 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46670 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46848 * 120.00282 * 21 19 17 24 24 H 1.48501 * 109.47294 * 240.00545 * 21 19 17 25 25 C 1.47439 * 110.99960 * 60.00086 * 12 7 6 26 26 H 1.08996 * 109.47023 * 269.96722 * 1 2 3 27 27 H 1.09000 * 109.47664 * 29.97138 * 1 2 3 28 28 H 1.09005 * 109.46610 * 149.97307 * 1 2 3 29 29 H 1.07999 * 126.59262 * 0.06949 * 3 2 1 30 30 H 1.08007 * 125.98921 * 180.02562 * 4 3 2 31 31 H 1.08994 * 115.55292 * 154.41718 * 9 7 6 32 32 H 1.08999 * 117.50011 * 0.02562 * 10 9 7 33 33 H 1.08997 * 117.49550 * 145.02497 * 10 9 7 34 34 H 1.08999 * 117.49669 * 214.97697 * 11 9 7 35 35 H 1.09000 * 117.49867 * 359.97438 * 11 9 7 36 36 H 1.08998 * 110.37199 * 332.46568 * 13 12 7 37 37 H 1.08993 * 110.37234 * 94.80758 * 13 12 7 38 38 H 1.08990 * 110.99221 * 278.97887 * 14 13 12 39 39 H 1.08998 * 111.02267 * 155.17373 * 14 13 12 40 40 H 0.96703 * 114.00647 * 66.39809 * 16 15 14 41 41 H 0.96998 * 119.99852 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88887 * 242.66206 * 25 12 7 43 43 H 1.09002 * 109.89008 * 3.84941 * 25 12 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6507 -0.0006 5 7 3.5096 -0.6901 0.0037 6 6 2.2664 -1.0869 -0.0008 7 6 1.8020 -2.5206 -0.0004 8 1 0.7459 -2.5603 0.2666 9 6 1.9987 -3.1208 -1.3939 10 6 2.7786 -2.2919 -2.4165 11 6 1.2635 -2.4562 -2.5596 12 7 2.5837 -3.2882 0.9782 13 6 2.1685 -4.7071 0.9921 14 6 2.3388 -5.1547 2.4653 15 6 1.8985 -3.8804 3.2328 16 8 0.4752 -3.8258 3.3471 17 6 2.5461 -3.8269 4.5926 18 1 3.2666 -3.0546 4.8176 19 6 2.2185 -4.7640 5.5495 20 7 1.3412 -5.7047 5.2754 21 14 3.0217 -4.6982 7.2347 22 1 3.9657 -3.5532 7.2887 23 1 1.9760 -4.5266 8.2751 24 1 3.7614 -5.9623 7.4802 25 6 2.4181 -2.7373 2.3357 26 1 -0.3633 -0.0006 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 1.9612 2.1346 0.0011 30 1 4.4368 1.2614 -0.0003 31 1 2.1192 -4.2036 -1.4267 32 1 3.1519 -1.3192 -2.0963 33 1 3.4119 -2.8295 -3.1222 34 1 0.9007 -3.1018 -3.3594 35 1 0.6394 -1.5916 -2.3335 36 1 1.1268 -4.8007 0.6851 37 1 2.8118 -5.2971 0.3395 38 1 3.3785 -5.4007 2.6810 39 1 1.6847 -5.9953 2.6967 40 1 0.0979 -4.5231 3.9009 41 1 1.1111 -6.3642 5.9485 42 1 3.3771 -2.3789 2.7100 43 1 1.6957 -1.9212 2.3192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602697351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:47 Heat of formation + Delta-G solvation = 58.663273 kcal Electronic energy + Delta-G solvation = -24746.300044 eV Core-core repulsion = 21407.980665 eV Total energy + Delta-G solvation = -3338.319379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03357 -38.68886 -36.94382 -34.39811 -33.84816 -32.06018 -30.89616 -28.63553 -28.04772 -26.94818 -25.82197 -23.98224 -22.29707 -21.57316 -21.10253 -20.22972 -19.33773 -18.56010 -17.13206 -16.80763 -16.52347 -15.16962 -14.99889 -14.87082 -14.50890 -14.23251 -13.99518 -13.67725 -13.29754 -13.07709 -12.83607 -12.67177 -12.54939 -11.97172 -11.84102 -11.67700 -11.30440 -11.26835 -11.00531 -10.91142 -10.59479 -10.41996 -10.32926 -10.16482 -9.90438 -9.85802 -9.56845 -9.33504 -9.23427 -8.60283 -8.15459 -8.07136 -7.56457 -6.19923 -4.25961 2.22428 2.90342 3.23266 3.31797 3.37507 3.43897 3.89824 4.32591 4.50301 4.62113 4.73946 4.92063 5.02089 5.06956 5.07432 5.14242 5.24875 5.35544 5.54884 5.63037 5.70449 5.72673 5.75983 5.98127 6.07147 6.08498 6.16038 6.18874 6.31954 6.39301 6.43381 6.50371 6.56048 6.97864 7.03981 7.09009 7.33288 7.45104 7.50941 7.71131 7.77875 7.85455 8.17277 8.45688 8.75973 9.41453 9.52133 10.87483 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.005054 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.583574 B = 5538.452223 C = 6062.332311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C -0.069 4.069 4 C -0.034 4.034 5 N -0.457 5.457 6 C 0.230 3.770 7 C 0.198 3.802 8 H 0.053 0.947 9 C -0.135 4.135 10 C -0.164 4.164 11 C -0.189 4.189 12 N -0.504 5.504 13 C 0.043 3.957 14 C -0.130 4.130 15 C 0.236 3.764 16 O -0.594 6.594 17 C -0.527 4.527 18 H 0.062 0.938 19 C 0.069 3.931 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 C 0.070 3.930 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.384 0.616 41 H 0.266 0.734 42 H 0.080 0.920 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 8.231 -13.019 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.144 5.144 3 C -0.202 4.202 4 C -0.182 4.182 5 N -0.175 5.175 6 C -0.033 4.033 7 C 0.087 3.913 8 H 0.071 0.929 9 C -0.154 4.154 10 C -0.201 4.201 11 C -0.226 4.226 12 N -0.229 5.229 13 C -0.084 4.084 14 C -0.169 4.169 15 C 0.195 3.805 16 O -0.405 6.405 17 C -0.566 4.566 18 H 0.081 0.919 19 C -0.132 4.132 20 N -0.542 5.542 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.057 4.057 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.187 0.813 30 H 0.183 0.817 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.235 0.765 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.927 8.141 -13.464 15.851 hybrid contribution -1.285 0.133 1.630 2.080 sum -3.212 8.274 -11.834 14.793 Atomic orbital electron populations 1.22069 0.77219 1.04197 1.03992 1.45331 1.07343 1.06717 1.54966 1.22578 0.91603 0.92192 1.13806 1.22358 0.96107 0.91755 1.08024 1.70359 1.18217 1.10708 1.18207 1.22963 0.85718 0.90107 1.04515 1.19525 0.94735 0.84516 0.92492 0.92949 1.22219 1.05145 0.99113 0.88906 1.23099 0.92895 1.02658 1.01436 1.22966 0.95841 1.02940 1.00897 1.63608 1.52070 1.01834 1.05358 1.23088 0.97487 0.88302 0.99570 1.23161 1.01680 1.00656 0.91401 1.19748 0.79124 0.89096 0.92529 1.86051 1.22407 1.57971 1.74027 1.21649 1.24343 1.13202 0.97399 0.91948 1.25001 0.94706 0.94508 0.99004 1.69598 1.33433 1.16229 1.34893 0.86409 0.79275 0.78114 0.83460 1.19620 1.20937 1.20821 1.22745 0.99737 0.96748 0.86463 0.90250 0.89762 0.89602 0.81348 0.81688 0.86683 0.87760 0.89245 0.88845 0.89870 0.94455 0.91697 0.91626 0.90806 0.76472 0.92390 0.90162 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.75 59.85 0.64 1.36 16 2 N -0.46 -6.48 3.15 -121.28 -0.38 -6.87 16 3 C -0.07 -0.90 11.58 -16.56 -0.19 -1.09 16 4 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 5 N -0.46 -8.31 9.92 -10.82 -0.11 -8.42 16 6 C 0.23 3.88 3.65 -155.42 -0.57 3.32 16 7 C 0.20 3.44 1.72 -68.86 -0.12 3.32 16 8 H 0.05 0.94 7.04 -51.93 -0.37 0.57 16 9 C -0.13 -2.00 5.63 -90.61 -0.51 -2.51 16 10 C -0.16 -2.29 9.66 -26.69 -0.26 -2.55 16 11 C -0.19 -2.29 10.02 -26.69 -0.27 -2.56 16 12 N -0.50 -10.25 5.01 -224.67 -1.13 -11.37 16 13 C 0.04 0.85 5.39 -2.29 -0.01 0.83 16 14 C -0.13 -3.03 5.66 -24.59 -0.14 -3.17 16 15 C 0.24 5.93 0.86 -89.95 -0.08 5.85 16 16 O -0.59 -15.41 13.09 -35.23 -0.46 -15.87 16 17 C -0.53 -14.44 8.21 -34.44 -0.28 -14.72 16 18 H 0.06 1.73 7.53 -52.49 -0.40 1.34 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 20 N -0.90 -24.12 10.69 55.43 0.59 -23.52 16 21 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.07 1.63 5.64 -2.84 -0.02 1.61 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.85 6.55 -51.93 -0.34 0.51 16 29 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.17 2.03 8.06 -52.48 -0.42 1.60 16 31 H 0.12 1.69 6.85 -51.93 -0.36 1.34 16 32 H 0.10 1.65 5.60 -51.93 -0.29 1.36 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.97 7.36 -51.93 -0.38 0.59 16 36 H 0.04 0.72 7.77 -51.93 -0.40 0.31 16 37 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 38 H 0.06 1.59 8.04 -51.93 -0.42 1.17 16 39 H 0.07 1.79 7.76 -51.93 -0.40 1.39 16 40 H 0.38 10.16 6.99 45.56 0.32 10.48 16 41 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.08 1.98 7.63 -51.93 -0.40 1.59 16 43 H 0.04 0.86 6.98 -51.93 -0.36 0.49 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -30.12 339.56 -9.36 -39.48 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -5.87 Total: 14.75 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.10 Total: -9.27 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -1.02 Total: -50.18 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.46 Total: -15.87 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.12 -9.36 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.147 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds