Wall clock time and date at job start Tue Mar 31 2020 07:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36886 * 126.39262 * 2 1 4 4 C 1.34664 * 106.81556 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.02206 * 359.79144 * 4 3 2 6 6 C 1.30502 * 109.25382 * 0.35847 * 5 4 3 7 7 C 1.50701 * 125.64805 * 179.89567 * 6 5 4 8 8 H 1.09002 * 109.47060 * 164.69731 * 7 6 5 9 9 C 1.53002 * 109.47419 * 284.69812 * 7 6 5 10 10 C 1.53005 * 117.49643 * 8.74372 * 9 7 6 11 11 C 1.53002 * 117.49437 * 300.08898 * 9 7 6 12 12 N 1.46901 * 109.46921 * 44.69550 * 7 6 5 13 13 C 1.47851 * 110.99806 * 180.84102 * 12 7 6 14 14 C 1.54908 * 104.79527 * 213.63658 * 13 12 7 15 15 C 1.55141 * 101.65117 * 37.07238 * 14 13 12 16 16 O 1.42897 * 110.70754 * 82.73127 * 15 14 13 17 17 C 1.50699 * 110.70354 * 205.96320 * 15 14 13 18 18 H 1.07996 * 120.00257 * 113.60331 * 17 15 14 19 19 C 1.37879 * 120.00158 * 293.59457 * 17 15 14 20 20 N 1.31519 * 119.99723 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00389 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46670 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46848 * 120.00282 * 21 19 17 24 24 H 1.48501 * 109.47294 * 240.00545 * 21 19 17 25 25 C 1.47439 * 110.99960 * 60.00086 * 12 7 6 26 26 H 1.08996 * 109.47023 * 269.96722 * 1 2 3 27 27 H 1.09000 * 109.47664 * 29.97138 * 1 2 3 28 28 H 1.09005 * 109.46610 * 149.97307 * 1 2 3 29 29 H 1.07999 * 126.59262 * 0.06949 * 3 2 1 30 30 H 1.08007 * 125.98921 * 180.02562 * 4 3 2 31 31 H 1.08994 * 115.55292 * 154.41718 * 9 7 6 32 32 H 1.08999 * 117.50011 * 0.02562 * 10 9 7 33 33 H 1.08997 * 117.49550 * 145.02497 * 10 9 7 34 34 H 1.08999 * 117.49669 * 214.97697 * 11 9 7 35 35 H 1.09000 * 117.49867 * 359.97438 * 11 9 7 36 36 H 1.08998 * 110.37199 * 332.46568 * 13 12 7 37 37 H 1.08993 * 110.37234 * 94.80758 * 13 12 7 38 38 H 1.08990 * 110.99221 * 278.97887 * 14 13 12 39 39 H 1.08998 * 111.02267 * 155.17373 * 14 13 12 40 40 H 0.96703 * 114.00647 * 66.39809 * 16 15 14 41 41 H 0.96998 * 119.99852 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.88887 * 242.66206 * 25 12 7 43 43 H 1.09002 * 109.89008 * 3.84941 * 25 12 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6507 -0.0006 5 7 3.5096 -0.6901 0.0037 6 6 2.2664 -1.0869 -0.0008 7 6 1.8020 -2.5206 -0.0004 8 1 0.7459 -2.5603 0.2666 9 6 1.9987 -3.1208 -1.3939 10 6 2.7786 -2.2919 -2.4165 11 6 1.2635 -2.4562 -2.5596 12 7 2.5837 -3.2882 0.9782 13 6 2.1685 -4.7071 0.9921 14 6 2.3388 -5.1547 2.4653 15 6 1.8985 -3.8804 3.2328 16 8 0.4752 -3.8258 3.3471 17 6 2.5461 -3.8269 4.5926 18 1 3.2666 -3.0546 4.8176 19 6 2.2185 -4.7640 5.5495 20 7 1.3412 -5.7047 5.2754 21 14 3.0217 -4.6982 7.2347 22 1 3.9657 -3.5532 7.2887 23 1 1.9760 -4.5266 8.2751 24 1 3.7614 -5.9623 7.4802 25 6 2.4181 -2.7373 2.3357 26 1 -0.3633 -0.0006 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5143 29 1 1.9612 2.1346 0.0011 30 1 4.4368 1.2614 -0.0003 31 1 2.1192 -4.2036 -1.4267 32 1 3.1519 -1.3192 -2.0963 33 1 3.4119 -2.8295 -3.1222 34 1 0.9007 -3.1018 -3.3594 35 1 0.6394 -1.5916 -2.3335 36 1 1.1268 -4.8007 0.6851 37 1 2.8118 -5.2971 0.3395 38 1 3.3785 -5.4007 2.6810 39 1 1.6847 -5.9953 2.6967 40 1 0.0979 -4.5231 3.9009 41 1 1.1111 -6.3642 5.9485 42 1 3.3771 -2.3789 2.7100 43 1 1.6957 -1.9212 2.3192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602697351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:46 Heat of formation + Delta-G solvation = 37.686183 kcal Electronic energy + Delta-G solvation = -24747.209679 eV Core-core repulsion = 21407.980665 eV Total energy + Delta-G solvation = -3339.229014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.15770 -40.31048 -38.31250 -36.15658 -34.89369 -34.15074 -32.39079 -30.22768 -29.70265 -27.98295 -27.40186 -25.72700 -23.31817 -22.89734 -22.27718 -21.69873 -21.16928 -19.81456 -19.16045 -18.00218 -17.72064 -16.95268 -16.60571 -16.12363 -16.08326 -15.72021 -15.32718 -15.13946 -14.62540 -14.25682 -14.19804 -13.85262 -13.81729 -13.55202 -13.49976 -13.29713 -13.20103 -12.79449 -12.52716 -12.44965 -12.28624 -12.26984 -12.04977 -11.83500 -11.36176 -11.12663 -10.99130 -10.73811 -10.64893 -10.43972 -10.11339 -9.24683 -9.20142 -8.25088 -6.39279 1.13124 1.36920 1.40110 1.51378 1.89439 2.26978 2.36702 2.76059 2.98611 3.17324 3.43414 3.75875 3.85383 3.90105 3.94422 4.11279 4.13597 4.21547 4.30937 4.35786 4.42495 4.48335 4.52623 4.57148 4.62892 4.65432 4.79144 4.83956 4.85997 5.04181 5.09693 5.18868 5.25797 5.31374 5.40539 5.46584 5.53446 5.77931 5.90017 5.96342 6.14304 6.16810 6.33492 6.63706 7.31022 7.31780 7.41613 8.80675 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.005054 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.583574 B = 5538.452223 C = 6062.332311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.461 5.461 3 C -0.050 4.050 4 C -0.064 4.064 5 N -0.496 5.496 6 C 0.206 3.794 7 C 0.201 3.799 8 H 0.046 0.954 9 C -0.153 4.153 10 C -0.168 4.168 11 C -0.159 4.159 12 N -0.510 5.510 13 C 0.055 3.945 14 C -0.123 4.123 15 C 0.224 3.776 16 O -0.597 6.597 17 C -0.558 4.558 18 H 0.046 0.954 19 C 0.033 3.967 20 N -0.912 5.912 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.276 1.276 24 H -0.275 1.275 25 C 0.090 3.910 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.211 0.789 30 H 0.182 0.818 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.379 0.621 41 H 0.271 0.729 42 H 0.055 0.945 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 9.030 -14.224 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.144 5.144 3 C -0.183 4.183 4 C -0.212 4.212 5 N -0.215 5.215 6 C -0.056 4.056 7 C 0.091 3.909 8 H 0.063 0.937 9 C -0.172 4.172 10 C -0.205 4.205 11 C -0.196 4.196 12 N -0.234 5.234 13 C -0.072 4.072 14 C -0.162 4.162 15 C 0.184 3.816 16 O -0.407 6.407 17 C -0.597 4.597 18 H 0.065 0.935 19 C -0.168 4.168 20 N -0.552 5.552 21 Si 0.785 3.215 22 H -0.201 1.201 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.038 4.038 26 H 0.091 0.909 27 H 0.140 0.860 28 H 0.108 0.892 29 H 0.227 0.773 30 H 0.199 0.801 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.842 8.936 -14.685 17.424 hybrid contribution -1.017 -0.052 2.005 2.248 sum -3.859 8.885 -12.681 15.957 Atomic orbital electron populations 1.22339 0.75147 1.06321 1.04229 1.45551 1.08682 1.06221 1.53899 1.23210 0.90778 0.93504 1.10790 1.22793 0.97963 0.91038 1.09383 1.70246 1.19465 1.12647 1.19123 1.22743 0.86082 0.90441 1.06381 1.19511 0.93655 0.84982 0.92801 0.93669 1.22173 1.07701 0.99149 0.88219 1.23052 0.94509 1.01663 1.01272 1.23047 0.94551 1.02647 0.99384 1.63560 1.53321 1.02241 1.04303 1.23010 0.98521 0.88287 0.97410 1.22962 1.00134 0.99384 0.93733 1.19898 0.78552 0.90763 0.92416 1.86038 1.22939 1.57845 1.73842 1.21839 1.25068 1.13591 0.99177 0.93536 1.25644 0.95108 0.94030 1.01987 1.69656 1.33501 1.16205 1.35854 0.85497 0.78460 0.78028 0.79565 1.20072 1.20118 1.20022 1.22365 0.97746 0.95768 0.87916 0.90922 0.86006 0.89224 0.77268 0.80068 0.86593 0.89601 0.88179 0.86395 0.89239 0.93649 0.89459 0.93215 0.92068 0.77036 0.91927 0.92682 0.95596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 10.75 127.77 1.37 2.51 16 2 N -0.46 -12.25 3.15 -537.61 -1.69 -13.95 16 3 C -0.05 -1.18 11.58 83.08 0.96 -0.22 16 4 C -0.06 -1.86 11.87 83.52 0.99 -0.87 16 5 N -0.50 -18.13 9.92 -188.13 -1.87 -19.99 16 6 C 0.21 6.90 3.65 138.13 0.50 7.40 16 7 C 0.20 6.90 1.72 44.17 0.08 6.98 16 8 H 0.05 1.60 7.04 -2.39 -0.02 1.58 16 9 C -0.15 -4.34 5.63 -10.79 -0.06 -4.40 16 10 C -0.17 -4.44 9.66 30.62 0.30 -4.14 16 11 C -0.16 -3.43 10.02 30.62 0.31 -3.12 16 12 N -0.51 -20.96 5.01 -864.73 -4.33 -25.29 16 13 C 0.05 2.16 5.39 86.77 0.47 2.63 16 14 C -0.12 -5.86 5.66 31.98 0.18 -5.68 16 15 C 0.22 11.59 0.86 -10.36 -0.01 11.58 16 16 O -0.60 -31.57 13.09 -148.98 -1.95 -33.52 16 17 C -0.56 -31.46 8.21 25.60 0.21 -31.25 16 18 H 0.05 2.69 7.53 -2.91 -0.02 2.67 16 19 C 0.03 1.76 5.28 84.65 0.45 2.21 16 20 N -0.91 -49.09 10.69 21.45 0.23 -48.86 16 21 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 C 0.09 4.31 5.64 86.65 0.49 4.80 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.59 6.55 -2.38 -0.02 1.58 16 29 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.18 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.12 3.22 6.85 -2.39 -0.02 3.20 16 32 H 0.09 2.65 5.60 -2.39 -0.01 2.64 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.82 7.36 -2.39 -0.02 1.81 16 36 H 0.05 1.71 7.77 -2.39 -0.02 1.70 16 37 H 0.09 3.05 7.84 -2.39 -0.02 3.03 16 38 H 0.05 2.47 8.04 -2.39 -0.02 2.45 16 39 H 0.06 3.02 7.76 -2.39 -0.02 3.00 16 40 H 0.38 20.47 6.99 -74.06 -0.52 19.95 16 41 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.05 2.87 7.63 -2.39 -0.02 2.85 16 43 H 0.03 1.26 6.98 -2.39 -0.02 1.24 16 Total: -1.00 -66.40 339.56 -0.85 -67.26 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: 0.50 Total: 40.61 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 6.23 Total: -11.59 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -7.66 Total: -108.09 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -1.95 Total: -33.52 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -66.40 -0.85 -67.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.944 kcal (2) G-P(sol) polarization free energy of solvation -66.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds