Wall clock time and date at job start Tue Mar 31 2020 07:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36884 * 126.39577 * 2 1 4 4 C 1.34671 * 106.81674 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.02019 * 359.77958 * 4 3 2 6 6 C 1.30502 * 109.25380 * 0.36863 * 5 4 3 7 7 C 1.50704 * 125.64489 * 179.89323 * 6 5 4 8 8 H 1.09001 * 109.46639 * 162.56729 * 7 6 5 9 9 C 1.53002 * 109.47117 * 282.56472 * 7 6 5 10 10 C 1.52996 * 117.49812 * 8.75248 * 9 7 6 11 11 C 1.53000 * 117.50090 * 300.09170 * 9 7 6 12 12 N 1.46895 * 109.47345 * 42.57007 * 7 6 5 13 13 C 1.48560 * 111.00066 * 60.10718 * 12 7 6 14 14 C 1.54385 * 104.59549 * 159.04030 * 13 12 7 15 15 C 1.54262 * 105.05801 * 336.15174 * 14 13 12 16 16 O 1.42899 * 110.32674 * 240.99837 * 15 14 13 17 17 C 1.50703 * 110.32556 * 118.89373 * 15 14 13 18 18 H 1.08000 * 120.00159 * 238.63124 * 17 15 14 19 19 C 1.37877 * 119.99974 * 58.61633 * 17 15 14 20 20 N 1.31520 * 119.99923 * 5.82963 * 19 17 15 21 21 Si 1.86798 * 120.00204 * 185.82074 * 19 17 15 22 22 H 1.48505 * 109.46984 * 94.98860 * 21 19 17 23 23 H 1.48497 * 109.47073 * 214.98691 * 21 19 17 24 24 H 1.48503 * 109.47185 * 334.98705 * 21 19 17 25 25 C 1.48556 * 111.00042 * 175.53051 * 12 7 6 26 26 H 1.08999 * 109.46891 * 269.97328 * 1 2 3 27 27 H 1.08994 * 109.47587 * 29.97008 * 1 2 3 28 28 H 1.08999 * 109.47076 * 149.97951 * 1 2 3 29 29 H 1.08009 * 126.58800 * 0.05919 * 3 2 1 30 30 H 1.07993 * 125.98561 * 180.02562 * 4 3 2 31 31 H 1.09003 * 115.54751 * 154.41702 * 9 7 6 32 32 H 1.08997 * 117.50054 * 359.97438 * 10 9 7 33 33 H 1.08999 * 117.49812 * 145.01793 * 10 9 7 34 34 H 1.09001 * 117.49762 * 214.98030 * 11 9 7 35 35 H 1.08999 * 117.49943 * 359.97030 * 11 9 7 36 36 H 1.08998 * 110.40756 * 40.26959 * 13 12 7 37 37 H 1.08993 * 110.41812 * 277.82202 * 13 12 7 38 38 H 1.08995 * 110.32624 * 217.26038 * 14 13 12 39 39 H 1.08998 * 110.32293 * 95.04276 * 14 13 12 40 40 H 0.96701 * 113.99638 * 298.54990 * 16 15 14 41 41 H 0.96996 * 120.00194 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.41262 * 82.18501 * 25 12 7 43 43 H 1.08999 * 110.51483 * 319.78971 * 25 12 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6902 0.0040 6 6 2.2663 -1.0869 -0.0006 7 6 1.8019 -2.5206 0.0000 8 1 0.7559 -2.5635 0.3036 9 6 1.9492 -3.1050 -1.4063 10 6 2.6929 -2.2645 -2.4462 11 6 1.1736 -2.4274 -2.5378 12 7 2.6173 -3.2991 0.9417 13 6 2.4969 -2.7611 2.3212 14 6 2.9237 -3.9311 3.2337 15 6 2.6755 -5.2031 2.3970 16 8 1.7195 -6.0447 3.0448 17 6 3.9674 -5.9488 2.1823 18 1 4.3208 -6.1394 1.1797 19 6 4.6984 -6.3875 3.2659 20 7 4.2143 -6.2575 4.4818 21 14 6.3763 -7.1666 3.0070 22 1 7.4313 -6.1331 3.1628 23 1 6.5835 -8.2407 4.0113 24 1 6.4480 -7.7453 1.6413 25 6 2.1196 -4.6947 1.0494 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8898 -0.5141 29 1 1.9612 2.1346 0.0009 30 1 4.4368 1.2612 -0.0003 31 1 2.0683 -4.1874 -1.4555 32 1 3.0768 -1.2951 -2.1286 33 1 3.3008 -2.7939 -3.1798 34 1 0.7826 -3.0639 -3.3315 35 1 0.5579 -1.5655 -2.2802 36 1 1.4661 -2.4740 2.5286 37 1 3.1642 -1.9102 2.4571 38 1 2.3149 -3.9478 4.1376 39 1 3.9799 -3.8461 3.4891 40 1 1.9979 -6.3578 3.9163 41 1 4.7284 -6.5664 5.2441 42 1 2.5030 -5.2996 0.2276 43 1 1.0298 -4.7121 1.0569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602697352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:50 Heat of formation + Delta-G solvation = 62.323269 kcal Electronic energy + Delta-G solvation = -24642.497254 eV Core-core repulsion = 21304.336584 eV Total energy + Delta-G solvation = -3338.160670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12020 -38.65361 -36.94516 -34.52587 -33.96092 -32.03254 -30.84091 -28.85747 -27.79752 -27.06256 -25.58489 -24.15825 -22.31203 -21.54226 -21.09487 -20.52905 -19.22798 -18.67182 -17.02910 -16.83959 -16.48979 -15.43277 -15.08009 -14.72423 -14.51067 -14.18806 -13.99706 -13.67609 -13.39890 -13.04238 -12.84748 -12.81935 -12.65468 -12.02604 -11.93093 -11.70263 -11.30014 -11.20752 -11.01074 -10.85756 -10.58909 -10.35596 -10.33891 -9.99850 -9.93291 -9.80179 -9.61826 -9.42987 -8.98894 -8.45860 -8.25439 -8.04569 -7.74454 -6.09094 -4.12692 2.12181 2.78143 3.33940 3.36712 3.40672 3.45394 3.87684 4.42724 4.44082 4.51146 4.62666 4.84438 4.92239 4.98105 5.07600 5.14930 5.19951 5.27206 5.49194 5.57276 5.63318 5.70604 5.76257 5.91872 5.96571 6.10357 6.16671 6.21735 6.23068 6.34207 6.39210 6.44708 6.58143 6.88823 6.92217 7.12110 7.23509 7.29356 7.59426 7.72661 7.75063 7.93722 8.29836 8.38603 8.89730 9.49132 9.60345 10.99033 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004879 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.746192 B = 5737.687969 C = 5783.628482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.463 5.463 3 C -0.070 4.070 4 C -0.032 4.032 5 N -0.453 5.453 6 C 0.227 3.773 7 C 0.191 3.809 8 H 0.048 0.952 9 C -0.133 4.133 10 C -0.162 4.162 11 C -0.190 4.190 12 N -0.470 5.470 13 C 0.039 3.961 14 C -0.118 4.118 15 C 0.250 3.750 16 O -0.596 6.596 17 C -0.515 4.515 18 H 0.063 0.937 19 C 0.066 3.934 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.273 1.273 25 C 0.054 3.946 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.019 0.981 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.383 0.617 41 H 0.265 0.735 42 H 0.079 0.921 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 13.109 -9.231 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.146 5.146 3 C -0.202 4.202 4 C -0.181 4.181 5 N -0.170 5.170 6 C -0.035 4.035 7 C 0.080 3.920 8 H 0.065 0.935 9 C -0.153 4.153 10 C -0.199 4.199 11 C -0.227 4.227 12 N -0.195 5.195 13 C -0.088 4.088 14 C -0.157 4.157 15 C 0.211 3.789 16 O -0.405 6.405 17 C -0.553 4.553 18 H 0.081 0.919 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.198 1.198 25 C -0.073 4.073 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.187 0.813 30 H 0.184 0.816 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.233 0.767 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.704 12.704 -9.781 17.788 hybrid contribution -0.313 0.348 0.845 0.966 sum -8.017 13.052 -8.935 17.733 Atomic orbital electron populations 1.22059 0.77376 1.04424 1.03625 1.45347 1.07231 1.06724 1.55331 1.22586 0.91607 0.92146 1.13907 1.22401 0.96146 0.91748 1.07769 1.70427 1.18109 1.10668 1.17797 1.22979 0.85757 0.90020 1.04756 1.19563 0.94155 0.84745 0.93560 0.93470 1.22194 1.05015 0.99434 0.88624 1.23062 0.93110 1.02404 1.01336 1.22983 0.95421 1.02859 1.01450 1.65304 1.47528 1.01485 1.05203 1.23094 0.97476 0.99241 0.89036 1.22838 1.02083 0.94387 0.96409 1.19245 0.86649 0.86849 0.86200 1.86071 1.47296 1.69755 1.37421 1.21634 1.05200 1.35226 0.93236 0.91907 1.24986 0.98176 0.95268 0.95067 1.69692 1.38329 1.47958 0.98194 0.86468 0.84122 0.78777 0.77965 1.20602 1.21405 1.19778 1.23030 0.96045 0.88230 0.99990 0.90604 0.89671 0.89526 0.81304 0.81624 0.86300 0.87999 0.89048 0.88748 0.89963 0.96285 0.91352 0.93191 0.90557 0.76662 0.92563 0.90223 0.95200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.66 59.85 0.64 1.22 16 2 N -0.46 -5.85 3.15 -121.28 -0.38 -6.23 16 3 C -0.07 -0.83 11.58 -16.56 -0.19 -1.02 16 4 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 5 N -0.45 -8.06 10.05 -10.82 -0.11 -8.17 16 6 C 0.23 3.64 3.88 -155.42 -0.60 3.03 16 7 C 0.19 3.19 1.87 -68.86 -0.13 3.06 16 8 H 0.05 0.75 6.99 -51.93 -0.36 0.38 16 9 C -0.13 -2.03 5.68 -90.62 -0.52 -2.54 16 10 C -0.16 -2.33 9.67 -26.70 -0.26 -2.58 16 11 C -0.19 -2.28 10.02 -26.69 -0.27 -2.55 16 12 N -0.47 -9.66 5.16 -223.40 -1.15 -10.82 16 13 C 0.04 0.83 5.72 -2.18 -0.01 0.81 16 14 C -0.12 -2.87 5.56 -25.34 -0.14 -3.01 16 15 C 0.25 6.35 1.06 -90.38 -0.10 6.25 16 16 O -0.60 -15.65 12.95 -35.23 -0.46 -16.10 16 17 C -0.51 -14.21 8.14 -34.44 -0.28 -14.49 16 18 H 0.06 1.76 7.53 -52.49 -0.40 1.36 16 19 C 0.07 1.80 4.92 -17.82 -0.09 1.71 16 20 N -0.90 -24.69 10.86 55.43 0.60 -24.08 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.05 1.19 4.99 -2.18 -0.01 1.18 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.70 6.29 -51.93 -0.33 0.38 16 29 H 0.17 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.12 1.89 6.78 -51.93 -0.35 1.54 16 32 H 0.10 1.62 5.69 -51.93 -0.30 1.33 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.91 6.96 -51.93 -0.36 0.55 16 36 H 0.02 0.37 7.97 -51.93 -0.41 -0.04 16 37 H 0.07 1.48 7.99 -51.93 -0.41 1.06 16 38 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 39 H 0.08 2.04 7.17 -51.93 -0.37 1.67 16 40 H 0.38 10.19 7.35 45.56 0.33 10.52 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.08 1.75 6.83 -51.93 -0.35 1.40 16 43 H 0.03 0.63 7.85 -51.93 -0.41 0.22 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -30.95 339.01 -9.38 -40.34 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.81 Total: 13.00 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.17 Total: -9.59 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -1.04 Total: -49.30 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.46 Total: -16.10 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.95 -9.38 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.661 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds