Wall clock time and date at job start Tue Mar 31 2020 07:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36884 * 126.39577 * 2 1 4 4 C 1.34671 * 106.81674 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.02019 * 359.77958 * 4 3 2 6 6 C 1.30502 * 109.25380 * 0.36863 * 5 4 3 7 7 C 1.50704 * 125.64489 * 179.89323 * 6 5 4 8 8 H 1.09001 * 109.46639 * 162.56729 * 7 6 5 9 9 C 1.53002 * 109.47117 * 282.56472 * 7 6 5 10 10 C 1.52996 * 117.49812 * 8.75248 * 9 7 6 11 11 C 1.53000 * 117.50090 * 300.09170 * 9 7 6 12 12 N 1.46895 * 109.47345 * 42.57007 * 7 6 5 13 13 C 1.48560 * 111.00066 * 60.10718 * 12 7 6 14 14 C 1.54385 * 104.59549 * 159.04030 * 13 12 7 15 15 C 1.54262 * 105.05801 * 336.15174 * 14 13 12 16 16 O 1.42899 * 110.32674 * 240.99837 * 15 14 13 17 17 C 1.50703 * 110.32556 * 118.89373 * 15 14 13 18 18 H 1.08000 * 120.00159 * 238.63124 * 17 15 14 19 19 C 1.37877 * 119.99974 * 58.61633 * 17 15 14 20 20 N 1.31520 * 119.99923 * 5.82963 * 19 17 15 21 21 Si 1.86798 * 120.00204 * 185.82074 * 19 17 15 22 22 H 1.48505 * 109.46984 * 94.98860 * 21 19 17 23 23 H 1.48497 * 109.47073 * 214.98691 * 21 19 17 24 24 H 1.48503 * 109.47185 * 334.98705 * 21 19 17 25 25 C 1.48556 * 111.00042 * 175.53051 * 12 7 6 26 26 H 1.08999 * 109.46891 * 269.97328 * 1 2 3 27 27 H 1.08994 * 109.47587 * 29.97008 * 1 2 3 28 28 H 1.08999 * 109.47076 * 149.97951 * 1 2 3 29 29 H 1.08009 * 126.58800 * 0.05919 * 3 2 1 30 30 H 1.07993 * 125.98561 * 180.02562 * 4 3 2 31 31 H 1.09003 * 115.54751 * 154.41702 * 9 7 6 32 32 H 1.08997 * 117.50054 * 359.97438 * 10 9 7 33 33 H 1.08999 * 117.49812 * 145.01793 * 10 9 7 34 34 H 1.09001 * 117.49762 * 214.98030 * 11 9 7 35 35 H 1.08999 * 117.49943 * 359.97030 * 11 9 7 36 36 H 1.08998 * 110.40756 * 40.26959 * 13 12 7 37 37 H 1.08993 * 110.41812 * 277.82202 * 13 12 7 38 38 H 1.08995 * 110.32624 * 217.26038 * 14 13 12 39 39 H 1.08998 * 110.32293 * 95.04276 * 14 13 12 40 40 H 0.96701 * 113.99638 * 298.54990 * 16 15 14 41 41 H 0.96996 * 120.00194 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.41262 * 82.18501 * 25 12 7 43 43 H 1.08999 * 110.51483 * 319.78971 * 25 12 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0006 5 7 3.5096 -0.6902 0.0040 6 6 2.2663 -1.0869 -0.0006 7 6 1.8019 -2.5206 0.0000 8 1 0.7559 -2.5635 0.3036 9 6 1.9492 -3.1050 -1.4063 10 6 2.6929 -2.2645 -2.4462 11 6 1.1736 -2.4274 -2.5378 12 7 2.6173 -3.2991 0.9417 13 6 2.4969 -2.7611 2.3212 14 6 2.9237 -3.9311 3.2337 15 6 2.6755 -5.2031 2.3970 16 8 1.7195 -6.0447 3.0448 17 6 3.9674 -5.9488 2.1823 18 1 4.3208 -6.1394 1.1797 19 6 4.6984 -6.3875 3.2659 20 7 4.2143 -6.2575 4.4818 21 14 6.3763 -7.1666 3.0070 22 1 7.4313 -6.1331 3.1628 23 1 6.5835 -8.2407 4.0113 24 1 6.4480 -7.7453 1.6413 25 6 2.1196 -4.6947 1.0494 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8898 -0.5141 29 1 1.9612 2.1346 0.0009 30 1 4.4368 1.2612 -0.0003 31 1 2.0683 -4.1874 -1.4555 32 1 3.0768 -1.2951 -2.1286 33 1 3.3008 -2.7939 -3.1798 34 1 0.7826 -3.0639 -3.3315 35 1 0.5579 -1.5655 -2.2802 36 1 1.4661 -2.4740 2.5286 37 1 3.1642 -1.9102 2.4571 38 1 2.3149 -3.9478 4.1376 39 1 3.9799 -3.8461 3.4891 40 1 1.9979 -6.3578 3.9163 41 1 4.7284 -6.5664 5.2441 42 1 2.5030 -5.2996 0.2276 43 1 1.0298 -4.7121 1.0569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602697352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:50 Heat of formation + Delta-G solvation = 40.276720 kcal Electronic energy + Delta-G solvation = -24643.453264 eV Core-core repulsion = 21304.336584 eV Total energy + Delta-G solvation = -3339.116680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.15162 -40.25740 -38.32343 -36.28987 -34.88523 -34.15180 -32.31658 -30.29983 -29.56689 -27.94672 -27.08731 -25.95545 -23.34326 -22.75845 -22.32536 -21.99662 -21.00710 -19.87300 -18.96997 -18.01579 -17.64257 -16.95836 -16.74123 -16.22339 -15.85341 -15.60826 -15.42694 -15.12517 -14.49833 -14.33107 -14.27807 -13.88758 -13.81086 -13.58663 -13.48531 -13.31315 -13.04939 -12.91947 -12.57130 -12.34898 -12.28888 -12.19334 -12.06664 -11.88634 -11.21134 -11.03636 -10.94472 -10.69605 -10.55914 -10.43584 -10.13075 -9.32685 -9.23704 -8.18819 -6.29291 1.13388 1.40409 1.43234 1.52648 1.87796 2.27568 2.42268 2.72256 3.04931 3.16672 3.39307 3.73341 3.87071 3.92811 3.96491 4.07808 4.13301 4.23272 4.28777 4.33818 4.38467 4.47122 4.53028 4.58887 4.62589 4.63921 4.77435 4.78864 4.86366 5.02009 5.02827 5.18964 5.22805 5.28239 5.35658 5.40738 5.63015 5.77438 5.90199 5.98061 6.12086 6.22840 6.34241 6.74751 7.34116 7.37044 7.47266 8.87791 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.004879 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.746192 B = 5737.687969 C = 5783.628482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.458 5.458 3 C -0.043 4.043 4 C -0.066 4.066 5 N -0.500 5.500 6 C 0.206 3.794 7 C 0.194 3.806 8 H 0.060 0.940 9 C -0.157 4.157 10 C -0.172 4.172 11 C -0.152 4.152 12 N -0.486 5.486 13 C 0.056 3.944 14 C -0.109 4.109 15 C 0.236 3.764 16 O -0.600 6.600 17 C -0.539 4.539 18 H 0.050 0.950 19 C 0.027 3.973 20 N -0.914 5.914 21 Si 0.954 3.046 22 H -0.281 1.281 23 H -0.279 1.279 24 H -0.272 1.272 25 C 0.068 3.932 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.212 0.788 30 H 0.178 0.822 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.377 0.623 41 H 0.267 0.733 42 H 0.073 0.927 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 14.785 -10.439 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.141 5.141 3 C -0.177 4.177 4 C -0.214 4.214 5 N -0.219 5.219 6 C -0.056 4.056 7 C 0.084 3.916 8 H 0.078 0.922 9 C -0.176 4.176 10 C -0.209 4.209 11 C -0.189 4.189 12 N -0.211 5.211 13 C -0.071 4.071 14 C -0.148 4.148 15 C 0.196 3.804 16 O -0.408 6.408 17 C -0.577 4.577 18 H 0.068 0.932 19 C -0.172 4.172 20 N -0.555 5.555 21 Si 0.781 3.219 22 H -0.207 1.207 23 H -0.204 1.204 24 H -0.197 1.197 25 C -0.060 4.060 26 H 0.101 0.899 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.229 0.771 30 H 0.195 0.805 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.227 0.773 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.280 14.383 -10.997 20.345 hybrid contribution 0.162 -0.106 1.220 1.235 sum -9.118 14.276 -9.778 19.559 Atomic orbital electron populations 1.22411 0.74777 1.06387 1.04736 1.45547 1.08772 1.05858 1.53901 1.23191 0.90577 0.93519 1.10391 1.22767 0.98097 0.90931 1.09625 1.70297 1.19838 1.12803 1.18966 1.22603 0.86022 0.90239 1.06767 1.19548 0.93960 0.85052 0.93084 0.92249 1.22148 1.07827 0.98814 0.88811 1.23011 0.95137 1.01512 1.01215 1.23060 0.93796 1.02546 0.99513 1.65198 1.49358 1.01117 1.05403 1.22833 0.98025 0.97360 0.88918 1.22612 0.99806 0.95619 0.96802 1.19460 0.86202 0.86808 0.87935 1.86063 1.47527 1.70104 1.37150 1.21838 1.06713 1.36299 0.92845 0.93198 1.25625 1.01020 0.95674 0.94928 1.69759 1.39177 1.48023 0.98541 0.85601 0.80304 0.78057 0.77975 1.20701 1.20397 1.19694 1.22793 0.96315 0.89177 0.97690 0.89916 0.86311 0.89087 0.77088 0.80516 0.87670 0.89478 0.88877 0.86661 0.88384 0.94537 0.92160 0.93765 0.93901 0.77286 0.92334 0.90874 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.66 127.77 1.36 2.12 16 2 N -0.46 -10.23 3.15 -537.60 -1.69 -11.93 16 3 C -0.04 -0.89 11.58 83.09 0.96 0.07 16 4 C -0.07 -1.82 11.87 83.52 0.99 -0.83 16 5 N -0.50 -17.72 10.05 -188.14 -1.89 -19.61 16 6 C 0.21 6.33 3.88 138.13 0.54 6.87 16 7 C 0.19 6.29 1.87 44.17 0.08 6.37 16 8 H 0.06 1.76 6.99 -2.39 -0.02 1.74 16 9 C -0.16 -4.62 5.68 -10.79 -0.06 -4.68 16 10 C -0.17 -4.77 9.67 30.62 0.30 -4.47 16 11 C -0.15 -3.24 10.02 30.62 0.31 -2.94 16 12 N -0.49 -20.08 5.16 -860.72 -4.44 -24.52 16 13 C 0.06 2.39 5.72 86.45 0.49 2.89 16 14 C -0.11 -5.44 5.56 31.49 0.18 -5.27 16 15 C 0.24 12.20 1.06 -10.64 -0.01 12.19 16 16 O -0.60 -32.00 12.95 -148.98 -1.93 -33.93 16 17 C -0.54 -30.53 8.14 25.60 0.21 -30.33 16 18 H 0.05 2.88 7.53 -2.91 -0.02 2.86 16 19 C 0.03 1.51 4.92 84.65 0.42 1.92 16 20 N -0.91 -50.94 10.86 21.45 0.23 -50.71 16 21 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 25 C 0.07 3.01 4.99 86.45 0.43 3.44 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 1.12 6.29 -2.39 -0.02 1.11 16 29 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.18 4.09 8.06 -2.91 -0.02 4.06 16 31 H 0.11 3.35 6.78 -2.39 -0.02 3.34 16 32 H 0.09 2.73 5.69 -2.39 -0.01 2.72 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 1.79 6.96 -2.39 -0.02 1.78 16 36 H 0.04 1.40 7.97 -2.39 -0.02 1.38 16 37 H 0.06 2.64 7.99 -2.39 -0.02 2.62 16 38 H 0.04 2.18 7.98 -2.39 -0.02 2.16 16 39 H 0.04 2.37 7.17 -2.39 -0.02 2.35 16 40 H 0.38 20.58 7.35 -74.06 -0.54 20.03 16 41 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.07 3.30 6.83 -2.38 -0.02 3.28 16 43 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 Total: -1.00 -68.72 339.01 -1.04 -69.76 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.47 Total: 36.72 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 6.19 Total: -12.64 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -7.80 Total: -106.77 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.93 Total: -33.93 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.72 -1.04 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.034 kcal (2) G-P(sol) polarization free energy of solvation -68.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds