Wall clock time and date at job start Tue Mar 31 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46510 * 109.46800 * 2 1 4 4 N 1.39935 * 125.75184 * 89.97511 * 3 2 1 5 5 C 1.30446 * 108.89590 * 180.02562 * 4 3 2 6 6 C 1.41286 * 108.02146 * 0.02562 * 5 4 3 7 7 C 1.47430 * 126.41217 * 179.97438 * 6 5 4 8 8 O 1.21603 * 119.99916 * 185.41600 * 7 6 5 9 9 N 1.34780 * 120.00351 * 5.41248 * 7 6 5 10 10 C 1.46495 * 120.00305 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47240 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47330 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47107 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99756 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47033 * 89.99593 * 17 15 13 19 19 H 1.48500 * 109.46668 * 209.99719 * 17 15 13 20 20 H 1.48499 * 109.47029 * 329.99946 * 17 15 13 21 21 C 1.34252 * 125.75406 * 270.30796 * 3 2 1 22 22 C 1.50703 * 126.29396 * 359.96254 * 21 3 2 23 23 C 1.53004 * 117.49513 * 311.58305 * 22 21 3 24 24 C 1.53000 * 117.49626 * 242.92379 * 22 21 3 25 25 H 1.08994 * 109.46900 * 299.99796 * 1 2 3 26 26 H 1.08993 * 109.46974 * 59.99838 * 1 2 3 27 27 H 1.08997 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47276 * 240.00639 * 2 1 3 29 29 H 1.08999 * 109.47172 * 119.99758 * 2 1 3 30 30 H 1.08003 * 125.98693 * 179.97438 * 5 4 3 31 31 H 0.97003 * 119.99372 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.47327 * 300.00286 * 10 9 7 33 33 H 1.09007 * 109.47203 * 60.00103 * 10 9 7 34 34 H 1.09003 * 109.47383 * 300.00482 * 11 10 9 35 35 H 1.09003 * 109.47003 * 60.00483 * 11 10 9 36 36 H 1.09000 * 109.46927 * 300.00598 * 12 11 10 37 37 H 1.09003 * 109.46530 * 60.00380 * 12 11 10 38 38 H 0.97008 * 119.99427 * 180.02562 * 16 15 13 39 39 H 1.09000 * 115.55094 * 97.25341 * 22 21 3 40 40 H 1.09002 * 117.49948 * 0.02562 * 23 22 21 41 41 H 1.09000 * 117.49406 * 145.02162 * 23 22 21 42 42 H 1.08993 * 117.49769 * 214.97536 * 24 22 21 43 43 H 1.08996 * 117.50071 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2904 2.1524 1.1356 5 6 2.7061 3.3295 0.7574 6 6 2.7153 3.3567 -0.6552 7 6 3.1156 4.4923 -1.5060 8 8 2.9855 4.4231 -2.7130 9 7 3.6257 5.6071 -0.9460 10 6 4.0230 6.7356 -1.7914 11 6 4.5652 7.8648 -0.9129 12 6 4.9807 9.0433 -1.7959 13 6 5.5154 10.1552 -0.9307 14 1 5.5553 10.0335 0.1417 15 6 5.9536 11.3281 -1.5082 16 7 5.9055 11.4761 -2.8140 17 14 6.6171 12.7062 -0.4357 18 1 8.0819 12.5358 -0.2608 19 1 6.3448 14.0136 -1.0852 20 1 5.9520 12.6646 0.8914 21 6 2.2743 2.1229 -1.0895 22 6 2.1129 1.6872 -2.5231 23 6 2.7108 0.3367 -2.9225 24 6 3.3715 1.6354 -3.3916 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 2.9922 4.1414 1.4097 31 1 3.7291 5.6624 0.0169 32 1 4.7968 6.4131 -2.4880 33 1 3.1579 7.0936 -2.3497 34 1 3.7911 8.1872 -0.2166 35 1 5.4303 7.5072 -0.3544 36 1 5.7550 8.7205 -2.4919 37 1 4.1159 9.4010 -2.3548 38 1 6.2142 12.3012 -3.2203 39 1 1.1818 1.9874 -3.0038 40 1 3.2204 -0.2369 -2.1483 41 1 2.1731 -0.2515 -3.6663 42 1 3.2683 1.9010 -4.4436 43 1 4.3161 1.9168 -2.9261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602848313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:58 Heat of formation + Delta-G solvation = 45.728150 kcal Electronic energy + Delta-G solvation = -22563.896755 eV Core-core repulsion = 19225.016467 eV Total energy + Delta-G solvation = -3338.880288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72612 -38.86160 -37.28932 -35.23905 -34.74744 -33.21582 -31.26715 -30.48369 -29.76219 -26.76891 -24.73228 -23.55961 -22.97150 -22.67940 -21.88963 -20.55758 -20.13771 -19.29437 -17.53946 -16.40294 -16.33363 -15.81494 -15.35425 -15.15830 -14.95284 -14.79218 -14.64281 -14.41071 -13.67502 -13.64271 -13.39840 -12.82038 -12.52876 -12.24534 -12.23345 -11.95711 -11.76737 -11.64858 -11.59620 -11.37240 -10.87819 -10.77644 -10.67011 -10.56291 -10.44681 -9.80913 -9.74384 -9.60929 -9.30442 -9.07717 -8.84474 -8.50012 -8.34262 -5.99064 -4.01791 1.39433 2.06493 2.10772 3.32904 3.39132 3.41952 3.44363 3.61578 3.66181 4.07058 4.18083 4.46967 4.52247 4.55126 4.67566 4.69775 4.75766 4.95310 5.11638 5.14468 5.21831 5.27748 5.36777 5.40799 5.62362 5.65388 5.68756 5.81848 5.86381 5.87565 5.94551 6.23270 6.28074 6.61164 6.63464 6.67422 6.93790 7.07358 7.38687 7.67413 7.80694 7.90935 8.00321 8.41472 8.60960 9.05035 9.62192 11.12259 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031454 B = 0.002627 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.974316 B =10656.569106 C =11327.347445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 N -0.356 5.356 4 N -0.298 5.298 5 C 0.080 3.920 6 C -0.284 4.284 7 C 0.587 3.413 8 O -0.544 6.544 9 N -0.724 5.724 10 C 0.121 3.879 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.182 3.818 22 C -0.096 4.096 23 C -0.190 4.190 24 C -0.124 4.124 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.190 0.810 31 H 0.395 0.605 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -26.231 4.108 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.135 5.135 4 N -0.117 5.117 5 C -0.107 4.107 6 C -0.299 4.299 7 C 0.373 3.627 8 O -0.422 6.422 9 N -0.374 5.374 10 C -0.002 4.002 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.050 3.950 22 C -0.115 4.115 23 C -0.227 4.227 24 C -0.161 4.161 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.207 0.793 31 H 0.229 0.771 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.901 -27.038 4.127 29.088 hybrid contribution 0.570 1.500 0.504 1.682 sum -9.331 -25.538 4.631 27.581 Atomic orbital electron populations 1.22169 0.93924 1.03216 1.03449 1.21916 0.95682 0.77667 1.04896 1.48528 1.49784 1.12105 1.03123 1.77172 1.22653 1.04502 1.07378 1.24057 0.97103 0.95590 0.93951 1.20112 1.19803 0.96528 0.93445 1.17197 0.77086 0.81404 0.86979 1.90752 1.55562 1.81782 1.14142 1.45970 1.64699 1.15995 1.10784 1.21590 0.99620 0.85280 0.93714 1.21887 0.99589 0.95560 0.98879 1.19028 0.96731 0.90920 0.94704 1.21218 1.41669 0.99693 0.93377 0.92652 1.25031 0.95940 0.98579 0.94950 1.69969 1.47397 1.26611 1.09351 0.86589 0.79261 0.81558 0.80554 1.20678 1.21234 1.19896 1.20509 0.94895 0.90568 0.89076 1.20414 1.00985 1.01153 0.88987 1.23229 1.04729 0.90799 1.03913 1.22815 0.95686 0.97497 1.00151 0.91541 0.91765 0.90316 0.88161 0.88534 0.79280 0.77128 0.91854 0.91862 0.92752 0.92767 0.96296 0.96281 0.92964 0.85335 0.88918 0.87822 0.87609 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.12 0.80 6.92 -4.03 -0.03 0.77 16 3 N -0.36 -3.78 3.58 -56.59 -0.20 -3.98 16 4 N -0.30 -3.64 12.50 30.86 0.39 -3.25 16 5 C 0.08 0.94 11.50 -16.98 -0.20 0.75 16 6 C -0.28 -3.81 6.12 -105.07 -0.64 -4.46 16 7 C 0.59 9.26 7.81 -12.52 -0.10 9.16 16 8 O -0.54 -10.01 14.69 5.28 0.08 -9.93 16 9 N -0.72 -10.88 5.55 -61.38 -0.34 -11.22 16 10 C 0.12 2.16 5.67 -4.05 -0.02 2.14 16 11 C -0.12 -2.39 5.27 -26.73 -0.14 -2.54 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.18 2.16 6.44 -81.60 -0.53 1.63 16 22 C -0.10 -0.97 5.01 -91.77 -0.46 -1.43 16 23 C -0.19 -1.38 8.81 -26.69 -0.24 -1.61 16 24 C -0.12 -1.27 8.96 -26.69 -0.24 -1.51 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 0.50 5.10 -51.93 -0.26 0.24 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.19 1.64 7.53 -52.48 -0.40 1.25 16 31 H 0.40 4.86 7.45 -40.82 -0.30 4.56 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 0.62 6.88 -51.93 -0.36 0.26 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -33.87 359.77 -8.48 -42.35 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.78 Total: 0.91 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.76 Total: -10.66 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.58 Total: -44.69 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.87 -8.48 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602848313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.083 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds