Wall clock time and date at job start Tue Mar 31 2020 06:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46510 * 109.46800 * 2 1 4 4 N 1.39935 * 125.75184 * 89.97511 * 3 2 1 5 5 C 1.30446 * 108.89590 * 180.02562 * 4 3 2 6 6 C 1.41286 * 108.02146 * 0.02562 * 5 4 3 7 7 C 1.47430 * 126.41217 * 179.97438 * 6 5 4 8 8 O 1.21603 * 119.99916 * 185.41600 * 7 6 5 9 9 N 1.34780 * 120.00351 * 5.41248 * 7 6 5 10 10 C 1.46495 * 120.00305 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47240 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47330 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47107 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99756 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47033 * 89.99593 * 17 15 13 19 19 H 1.48500 * 109.46668 * 209.99719 * 17 15 13 20 20 H 1.48499 * 109.47029 * 329.99946 * 17 15 13 21 21 C 1.34252 * 125.75406 * 270.30796 * 3 2 1 22 22 C 1.50703 * 126.29396 * 359.96254 * 21 3 2 23 23 C 1.53004 * 117.49513 * 311.58305 * 22 21 3 24 24 C 1.53000 * 117.49626 * 242.92379 * 22 21 3 25 25 H 1.08994 * 109.46900 * 299.99796 * 1 2 3 26 26 H 1.08993 * 109.46974 * 59.99838 * 1 2 3 27 27 H 1.08997 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47276 * 240.00639 * 2 1 3 29 29 H 1.08999 * 109.47172 * 119.99758 * 2 1 3 30 30 H 1.08003 * 125.98693 * 179.97438 * 5 4 3 31 31 H 0.97003 * 119.99372 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.47327 * 300.00286 * 10 9 7 33 33 H 1.09007 * 109.47203 * 60.00103 * 10 9 7 34 34 H 1.09003 * 109.47383 * 300.00482 * 11 10 9 35 35 H 1.09003 * 109.47003 * 60.00483 * 11 10 9 36 36 H 1.09000 * 109.46927 * 300.00598 * 12 11 10 37 37 H 1.09003 * 109.46530 * 60.00380 * 12 11 10 38 38 H 0.97008 * 119.99427 * 180.02562 * 16 15 13 39 39 H 1.09000 * 115.55094 * 97.25341 * 22 21 3 40 40 H 1.09002 * 117.49948 * 0.02562 * 23 22 21 41 41 H 1.09000 * 117.49406 * 145.02162 * 23 22 21 42 42 H 1.08993 * 117.49769 * 214.97536 * 24 22 21 43 43 H 1.08996 * 117.50071 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2904 2.1524 1.1356 5 6 2.7061 3.3295 0.7574 6 6 2.7153 3.3567 -0.6552 7 6 3.1156 4.4923 -1.5060 8 8 2.9855 4.4231 -2.7130 9 7 3.6257 5.6071 -0.9460 10 6 4.0230 6.7356 -1.7914 11 6 4.5652 7.8648 -0.9129 12 6 4.9807 9.0433 -1.7959 13 6 5.5154 10.1552 -0.9307 14 1 5.5553 10.0335 0.1417 15 6 5.9536 11.3281 -1.5082 16 7 5.9055 11.4761 -2.8140 17 14 6.6171 12.7062 -0.4357 18 1 8.0819 12.5358 -0.2608 19 1 6.3448 14.0136 -1.0852 20 1 5.9520 12.6646 0.8914 21 6 2.2743 2.1229 -1.0895 22 6 2.1129 1.6872 -2.5231 23 6 2.7108 0.3367 -2.9225 24 6 3.3715 1.6354 -3.3916 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 2.9922 4.1414 1.4097 31 1 3.7291 5.6624 0.0169 32 1 4.7968 6.4131 -2.4880 33 1 3.1579 7.0936 -2.3497 34 1 3.7911 8.1872 -0.2166 35 1 5.4303 7.5072 -0.3544 36 1 5.7550 8.7205 -2.4919 37 1 4.1159 9.4010 -2.3548 38 1 6.2142 12.3012 -3.2203 39 1 1.1818 1.9874 -3.0038 40 1 3.2204 -0.2369 -2.1483 41 1 2.1731 -0.2515 -3.6663 42 1 3.2683 1.9010 -4.4436 43 1 4.3161 1.9168 -2.9261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602848313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:57 Heat of formation + Delta-G solvation = 24.238842 kcal Electronic energy + Delta-G solvation = -22564.828601 eV Core-core repulsion = 19225.016467 eV Total energy + Delta-G solvation = -3339.812134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.60772 -40.13012 -38.04372 -36.82812 -35.43743 -35.09495 -33.01365 -31.33847 -30.70794 -28.50749 -25.84523 -24.63811 -24.15029 -23.40542 -22.92157 -22.24966 -21.11005 -20.32801 -18.63919 -18.39798 -17.18204 -16.77669 -16.71262 -16.49503 -16.35594 -15.76037 -15.62627 -15.35950 -15.06068 -14.68778 -14.41228 -14.18407 -13.73250 -13.56555 -13.33613 -13.07601 -12.98005 -12.72889 -12.57293 -12.52560 -12.36739 -12.34027 -12.10334 -11.63988 -11.52867 -11.48362 -11.21255 -11.20542 -10.74743 -10.53757 -10.42263 -10.07684 -9.58619 -8.18000 -6.29198 0.46266 1.14284 1.31725 1.42540 1.43970 1.54966 2.34862 2.45585 2.48892 2.74129 3.15704 3.33322 3.46116 3.84629 3.91042 3.98611 4.04399 4.12816 4.19847 4.26114 4.26798 4.33300 4.42534 4.59871 4.68249 4.75332 4.79579 4.85434 4.97836 4.99080 5.07001 5.07532 5.17879 5.19101 5.20148 5.38825 5.50459 5.59020 5.73844 5.86163 5.86389 6.24570 6.49242 6.72982 6.88517 7.38601 7.40374 8.94172 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031454 B = 0.002627 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.974316 B =10656.569106 C =11327.347445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.350 5.350 4 N -0.316 5.316 5 C 0.083 3.917 6 C -0.313 4.313 7 C 0.586 3.414 8 O -0.577 6.577 9 N -0.715 5.715 10 C 0.136 3.864 11 C -0.102 4.102 12 C 0.024 3.976 13 C -0.540 4.540 14 H 0.066 0.934 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.261 1.261 21 C 0.184 3.816 22 C -0.111 4.111 23 C -0.150 4.150 24 C -0.145 4.145 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.214 0.786 31 H 0.411 0.589 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.067 0.933 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 -27.979 5.962 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.128 5.128 4 N -0.135 5.135 5 C -0.104 4.104 6 C -0.328 4.328 7 C 0.375 3.625 8 O -0.458 6.458 9 N -0.367 5.367 10 C 0.012 3.988 11 C -0.140 4.140 12 C -0.014 4.014 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.185 1.185 21 C 0.050 3.950 22 C -0.131 4.131 23 C -0.187 4.187 24 C -0.183 4.183 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.231 0.769 31 H 0.247 0.753 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.276 -28.825 6.036 31.191 hybrid contribution 0.647 1.957 -0.111 2.064 sum -9.628 -26.868 5.925 29.149 Atomic orbital electron populations 1.22144 0.93083 1.04714 1.02256 1.22334 0.96366 0.75844 1.06509 1.48867 1.48672 1.13025 1.02275 1.77134 1.23184 1.04832 1.08316 1.24427 0.96356 0.96146 0.93454 1.20010 1.22192 0.96505 0.94080 1.17543 0.76337 0.81817 0.86852 1.90729 1.56961 1.82403 1.15684 1.45728 1.64571 1.15070 1.11291 1.21173 0.98514 0.85708 0.93419 1.21598 1.00456 0.93851 0.98074 1.18940 0.94793 0.92832 0.94801 1.21690 1.41479 1.00471 0.94172 0.91574 1.26026 0.96227 1.01586 0.96317 1.70116 1.48526 1.27513 1.11405 0.85418 0.78768 0.77758 0.78920 1.19817 1.21028 1.18456 1.20760 0.93740 0.90346 0.90125 1.20474 1.00749 1.03855 0.88007 1.23342 1.02317 0.89359 1.03676 1.22748 0.94943 1.00738 0.99867 0.93142 0.92488 0.87469 0.86105 0.87359 0.76909 0.75308 0.93256 0.93307 0.91431 0.91449 0.98948 0.98948 0.92831 0.85384 0.87733 0.85070 0.87949 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.24 71.98 0.74 -0.77 16 2 C 0.11 1.17 6.92 86.38 0.60 1.77 16 3 N -0.35 -6.85 3.58 -332.97 -1.19 -8.04 16 4 N -0.32 -7.24 12.50 -56.28 -0.70 -7.95 16 5 C 0.08 1.85 11.50 85.65 0.99 2.84 16 6 C -0.31 -8.29 6.12 -20.15 -0.12 -8.41 16 7 C 0.59 18.72 7.81 86.66 0.68 19.40 16 8 O -0.58 -21.96 14.69 -4.04 -0.06 -22.02 16 9 N -0.72 -21.38 5.55 -466.37 -2.59 -23.97 16 10 C 0.14 4.97 5.67 86.38 0.49 5.46 16 11 C -0.10 -4.02 5.27 30.59 0.16 -3.86 16 12 C 0.02 1.27 4.97 29.85 0.15 1.42 16 13 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 16 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 21 C 0.18 4.23 6.44 42.14 0.27 4.50 16 22 C -0.11 -2.16 5.01 -11.54 -0.06 -2.21 16 23 C -0.15 -1.81 8.81 30.62 0.27 -1.54 16 24 C -0.15 -2.95 8.96 30.62 0.27 -2.68 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.12 0.79 5.10 -2.39 -0.01 0.78 16 29 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.21 3.32 7.53 -2.91 -0.02 3.30 16 31 H 0.41 9.62 7.45 -92.71 -0.69 8.92 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 39 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.10 1.04 6.88 -2.39 -0.02 1.03 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -74.87 359.77 3.21 -71.66 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.31 Total: 15.53 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 5.13 Total: -14.10 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -4.20 Total: -97.30 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -74.87 3.21 -71.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602848313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.896 kcal (2) G-P(sol) polarization free energy of solvation -74.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds