Wall clock time and date at job start Tue Mar 31 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47270 * 2 1 4 4 C 1.46493 * 119.99669 * 272.07053 * 3 2 1 5 5 C 1.50701 * 109.47292 * 269.99734 * 4 3 2 6 6 H 1.08001 * 119.99830 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00453 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99831 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00176 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47078 * 60.00031 * 9 7 5 11 11 H 1.48504 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.46986 * 299.99605 * 9 7 5 13 13 C 1.34776 * 120.00002 * 92.06850 * 3 2 1 14 14 O 1.21595 * 119.99731 * 184.12769 * 13 3 2 15 15 C 1.47431 * 119.99780 * 4.12796 * 13 3 2 16 16 C 1.41291 * 126.41489 * 303.29125 * 15 13 3 17 17 N 1.30452 * 108.01950 * 180.02562 * 16 15 13 18 18 N 1.39932 * 108.89912 * 359.78083 * 17 16 15 19 19 C 1.46502 * 125.75774 * 180.25883 * 18 17 16 20 20 C 1.52998 * 109.47296 * 270.13161 * 19 18 17 21 21 C 1.34266 * 108.49409 * 0.36917 * 18 17 16 22 22 C 1.50700 * 126.29558 * 179.90394 * 21 18 17 23 23 C 1.52991 * 117.49876 * 163.75884 * 22 21 18 24 24 C 1.52993 * 117.49987 * 232.42245 * 22 21 18 25 25 H 1.09003 * 109.46930 * 186.47554 * 1 2 3 26 26 H 1.09006 * 109.47166 * 306.47828 * 1 2 3 27 27 H 1.09000 * 109.47117 * 66.47582 * 1 2 3 28 28 H 1.08997 * 109.47428 * 239.99956 * 2 1 3 29 29 H 1.08995 * 109.47206 * 119.99873 * 2 1 3 30 30 H 1.08994 * 109.47785 * 29.99662 * 4 3 2 31 31 H 1.08998 * 109.47151 * 149.99885 * 4 3 2 32 32 H 0.96993 * 119.99985 * 180.02562 * 8 7 5 33 33 H 1.07997 * 125.98642 * 0.04539 * 16 15 13 34 34 H 1.09005 * 109.46835 * 30.13057 * 19 18 17 35 35 H 1.08997 * 109.47039 * 150.12615 * 19 18 17 36 36 H 1.08998 * 109.47290 * 59.99004 * 20 19 18 37 37 H 1.08997 * 109.47423 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.46662 * 300.00052 * 20 19 18 39 39 H 1.08998 * 115.54331 * 18.09231 * 22 21 18 40 40 H 1.09001 * 117.49755 * 215.00264 * 23 22 21 41 41 H 1.09001 * 117.49974 * 0.02674 * 23 22 21 42 42 H 1.09002 * 117.50198 * 359.97296 * 24 22 21 43 43 H 1.08999 * 117.49991 * 144.97330 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2193 2.0870 -1.2679 5 6 3.6269 1.8558 -1.7540 6 1 4.3039 1.2439 -1.1764 7 6 4.0504 2.4254 -2.9360 8 7 3.2258 3.1701 -3.6396 9 14 5.7950 2.1381 -3.5389 10 1 6.0152 0.6837 -3.7424 11 1 5.9987 2.8537 -4.8241 12 1 6.7576 2.6482 -2.5298 13 6 2.2827 2.0026 1.1664 14 8 2.6159 3.1720 1.1705 15 6 2.1679 1.2643 2.4374 16 6 1.0214 0.5911 2.9158 17 7 1.3163 0.0634 4.0717 18 7 2.6473 0.3647 4.3813 19 6 3.3600 -0.0514 5.5917 20 6 3.1775 1.0076 6.6807 21 6 3.1603 1.1017 3.3831 22 6 4.5635 1.6460 3.3063 23 6 5.0612 2.1260 1.9415 24 6 4.7268 3.1429 3.0358 25 1 -0.3633 -1.0211 0.1159 26 1 -0.3634 0.6110 0.8264 27 1 -0.3633 0.4102 -0.9423 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.5130 1.7120 -2.0085 31 1 2.0571 3.1546 -1.1191 32 1 3.5236 3.5705 -4.4714 33 1 0.0682 0.5249 2.4124 34 1 2.9595 -1.0035 5.9399 35 1 4.4209 -0.1636 5.3681 36 1 2.1166 1.1199 6.9041 37 1 3.7074 0.6978 7.5814 38 1 3.5780 1.9597 6.3323 39 1 5.2883 1.1720 3.9682 40 1 6.1136 1.9681 1.7056 41 1 4.3736 2.0487 1.0993 42 1 3.8194 3.7341 2.9129 43 1 5.5589 3.6540 3.5200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602918363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:01 Heat of formation + Delta-G solvation = 71.745249 kcal Electronic energy + Delta-G solvation = -24480.018042 eV Core-core repulsion = 21142.265940 eV Total energy + Delta-G solvation = -3337.752102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39193 -38.63531 -36.72818 -35.02390 -34.52651 -32.73467 -30.23559 -29.96939 -29.51395 -26.98310 -24.48527 -23.43193 -22.90061 -22.55399 -21.94995 -21.11794 -19.48318 -18.17571 -17.16942 -16.43771 -15.97935 -15.54559 -15.02139 -14.87182 -14.44473 -14.33753 -14.09592 -13.77597 -13.70896 -13.10852 -12.81530 -12.56823 -12.37521 -12.25917 -11.96525 -11.65643 -11.51602 -11.34607 -11.14491 -10.92369 -10.87228 -10.78465 -10.61724 -10.56950 -10.47526 -10.08818 -10.02637 -9.56746 -9.06905 -8.88567 -8.40141 -8.14362 -7.56162 -6.00705 -4.05310 1.82689 2.44391 2.65889 3.33368 3.37882 3.39688 3.63819 4.11671 4.24906 4.41723 4.49030 4.57548 4.79174 4.92045 5.01912 5.08217 5.14450 5.29808 5.34445 5.37018 5.43191 5.49315 5.53441 5.73137 5.79747 5.84687 5.89726 5.96819 6.09382 6.15999 6.23539 6.33282 6.58438 6.59659 6.67434 6.78276 7.02917 7.18290 7.52012 7.64607 7.78673 7.96634 8.27796 8.52910 8.94348 9.20516 9.59917 11.07201 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.005457 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.897614 B = 5130.037185 C = 6046.245819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.590 5.590 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.586 3.414 14 O -0.539 6.539 15 C -0.275 4.275 16 C 0.075 3.925 17 N -0.305 5.305 18 N -0.364 5.364 19 C 0.129 3.871 20 C -0.170 4.170 21 C 0.170 3.830 22 C -0.128 4.128 23 C -0.156 4.156 24 C -0.148 4.148 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.189 0.811 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -7.393 16.307 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.321 5.321 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.373 3.627 14 O -0.417 6.417 15 C -0.290 4.290 16 C -0.111 4.111 17 N -0.124 5.124 18 N -0.144 5.144 19 C 0.007 3.993 20 C -0.228 4.228 21 C 0.040 3.960 22 C -0.148 4.148 23 C -0.194 4.194 24 C -0.185 4.185 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.206 0.794 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.516 -7.430 17.221 18.763 hybrid contribution 1.216 0.118 -1.035 1.601 sum 0.700 -7.312 16.187 17.775 Atomic orbital electron populations 1.22343 0.97000 1.01213 1.02327 1.21372 0.93350 0.84351 1.02532 1.48150 1.63318 1.13238 1.07382 1.19274 0.96430 0.93527 0.78064 1.21387 0.97549 1.31193 1.06200 0.92471 1.24904 0.97472 0.94966 0.96550 1.69922 1.35373 1.32854 1.15156 0.86620 0.84970 0.78189 0.78018 1.20330 1.21265 1.20148 1.17136 0.77341 0.85973 0.82294 1.90720 1.48071 1.16011 1.86935 1.20216 0.95183 1.13506 1.00109 1.24168 0.99230 0.95110 0.92617 1.77075 0.92892 1.25159 1.17318 1.48297 1.09038 1.40814 1.16261 1.21652 0.96190 0.99225 0.82192 1.22187 1.03338 0.99319 0.97983 1.20432 0.94396 0.93340 0.87859 1.20494 0.90719 0.99521 1.04093 1.23437 1.02603 1.01100 0.92228 1.23167 1.04347 0.89318 1.01707 0.92194 0.92836 0.92002 0.90276 0.91561 0.95063 0.93680 0.92727 0.79428 0.88719 0.89049 0.91617 0.90640 0.91683 0.87200 0.88774 0.85380 0.86409 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.71 37.16 0.36 -2.05 16 2 C 0.11 1.85 5.69 -4.04 -0.02 1.83 16 3 N -0.59 -12.57 2.46 -176.34 -0.43 -13.00 16 4 C 0.25 6.33 5.20 -5.20 -0.03 6.30 16 5 C -0.52 -14.44 9.39 -34.44 -0.32 -14.76 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.59 12.48 5.02 -12.52 -0.06 12.41 16 14 O -0.54 -13.17 12.77 5.28 0.07 -13.10 16 15 C -0.28 -4.96 4.65 -105.06 -0.49 -5.44 16 16 C 0.08 1.19 10.09 -16.98 -0.17 1.01 16 17 N -0.31 -4.71 12.50 30.86 0.39 -4.32 16 18 N -0.36 -5.12 3.58 -56.60 -0.20 -5.33 16 19 C 0.13 1.23 6.93 -4.04 -0.03 1.20 16 20 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 21 C 0.17 2.74 6.66 -81.60 -0.54 2.19 16 22 C -0.13 -1.89 5.94 -91.78 -0.55 -2.44 16 23 C -0.16 -2.76 9.49 -26.70 -0.25 -3.01 16 24 C -0.15 -2.34 9.62 -26.70 -0.26 -2.60 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.73 5.55 -51.93 -0.29 0.44 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 29 H 0.07 1.07 6.09 -51.93 -0.32 0.76 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 32 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 33 H 0.19 2.56 5.28 -52.49 -0.28 2.29 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.71 7.12 -51.93 -0.37 0.34 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 1.27 7.22 -51.93 -0.37 0.90 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.13 2.81 4.56 -51.93 -0.24 2.58 16 42 H 0.12 2.19 6.42 -51.93 -0.33 1.86 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -32.38 346.55 -7.67 -40.04 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.34 Total: 4.22 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.08 Total: -4.72 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.49 Total: -48.14 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.38 -7.67 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602918363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.789 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds