Wall clock time and date at job start Tue Mar 31 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47270 * 2 1 4 4 C 1.46493 * 119.99669 * 272.07053 * 3 2 1 5 5 C 1.50701 * 109.47292 * 269.99734 * 4 3 2 6 6 H 1.08001 * 119.99830 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00453 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99831 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00176 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47078 * 60.00031 * 9 7 5 11 11 H 1.48504 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.46986 * 299.99605 * 9 7 5 13 13 C 1.34776 * 120.00002 * 92.06850 * 3 2 1 14 14 O 1.21595 * 119.99731 * 184.12769 * 13 3 2 15 15 C 1.47431 * 119.99780 * 4.12796 * 13 3 2 16 16 C 1.41291 * 126.41489 * 303.29125 * 15 13 3 17 17 N 1.30452 * 108.01950 * 180.02562 * 16 15 13 18 18 N 1.39932 * 108.89912 * 359.78083 * 17 16 15 19 19 C 1.46502 * 125.75774 * 180.25883 * 18 17 16 20 20 C 1.52998 * 109.47296 * 270.13161 * 19 18 17 21 21 C 1.34266 * 108.49409 * 0.36917 * 18 17 16 22 22 C 1.50700 * 126.29558 * 179.90394 * 21 18 17 23 23 C 1.52991 * 117.49876 * 163.75884 * 22 21 18 24 24 C 1.52993 * 117.49987 * 232.42245 * 22 21 18 25 25 H 1.09003 * 109.46930 * 186.47554 * 1 2 3 26 26 H 1.09006 * 109.47166 * 306.47828 * 1 2 3 27 27 H 1.09000 * 109.47117 * 66.47582 * 1 2 3 28 28 H 1.08997 * 109.47428 * 239.99956 * 2 1 3 29 29 H 1.08995 * 109.47206 * 119.99873 * 2 1 3 30 30 H 1.08994 * 109.47785 * 29.99662 * 4 3 2 31 31 H 1.08998 * 109.47151 * 149.99885 * 4 3 2 32 32 H 0.96993 * 119.99985 * 180.02562 * 8 7 5 33 33 H 1.07997 * 125.98642 * 0.04539 * 16 15 13 34 34 H 1.09005 * 109.46835 * 30.13057 * 19 18 17 35 35 H 1.08997 * 109.47039 * 150.12615 * 19 18 17 36 36 H 1.08998 * 109.47290 * 59.99004 * 20 19 18 37 37 H 1.08997 * 109.47423 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.46662 * 300.00052 * 20 19 18 39 39 H 1.08998 * 115.54331 * 18.09231 * 22 21 18 40 40 H 1.09001 * 117.49755 * 215.00264 * 23 22 21 41 41 H 1.09001 * 117.49974 * 0.02674 * 23 22 21 42 42 H 1.09002 * 117.50198 * 359.97296 * 24 22 21 43 43 H 1.08999 * 117.49991 * 144.97330 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2193 2.0870 -1.2679 5 6 3.6269 1.8558 -1.7540 6 1 4.3039 1.2439 -1.1764 7 6 4.0504 2.4254 -2.9360 8 7 3.2258 3.1701 -3.6396 9 14 5.7950 2.1381 -3.5389 10 1 6.0152 0.6837 -3.7424 11 1 5.9987 2.8537 -4.8241 12 1 6.7576 2.6482 -2.5298 13 6 2.2827 2.0026 1.1664 14 8 2.6159 3.1720 1.1705 15 6 2.1679 1.2643 2.4374 16 6 1.0214 0.5911 2.9158 17 7 1.3163 0.0634 4.0717 18 7 2.6473 0.3647 4.3813 19 6 3.3600 -0.0514 5.5917 20 6 3.1775 1.0076 6.6807 21 6 3.1603 1.1017 3.3831 22 6 4.5635 1.6460 3.3063 23 6 5.0612 2.1260 1.9415 24 6 4.7268 3.1429 3.0358 25 1 -0.3633 -1.0211 0.1159 26 1 -0.3634 0.6110 0.8264 27 1 -0.3633 0.4102 -0.9423 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.5130 1.7120 -2.0085 31 1 2.0571 3.1546 -1.1191 32 1 3.5236 3.5705 -4.4714 33 1 0.0682 0.5249 2.4124 34 1 2.9595 -1.0035 5.9399 35 1 4.4209 -0.1636 5.3681 36 1 2.1166 1.1199 6.9041 37 1 3.7074 0.6978 7.5814 38 1 3.5780 1.9597 6.3323 39 1 5.2883 1.1720 3.9682 40 1 6.1136 1.9681 1.7056 41 1 4.3736 2.0487 1.0993 42 1 3.8194 3.7341 2.9129 43 1 5.5589 3.6540 3.5200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602918363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:01 Heat of formation + Delta-G solvation = 51.989525 kcal Electronic energy + Delta-G solvation = -24480.874714 eV Core-core repulsion = 21142.265940 eV Total energy + Delta-G solvation = -3338.608775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.63796 -40.24231 -38.02797 -36.68731 -35.50890 -34.77246 -31.70733 -31.27815 -30.67785 -28.83967 -25.88882 -24.72246 -24.28934 -23.99370 -23.28937 -22.41805 -20.72693 -19.62736 -18.52095 -18.47118 -17.44018 -17.15432 -16.40803 -16.09762 -16.00625 -15.55824 -15.44173 -15.14124 -14.86161 -14.55265 -14.25949 -14.12107 -13.61896 -13.41217 -13.21666 -13.07969 -12.97945 -12.66359 -12.58561 -12.48761 -12.36348 -12.27741 -12.08386 -11.99138 -11.85815 -11.80100 -11.60104 -11.28828 -10.58596 -10.57575 -10.19652 -9.49217 -9.32786 -8.16323 -6.30237 0.57714 1.33199 1.39147 1.40572 1.43239 1.50446 2.05128 2.41028 2.57607 2.98640 3.13357 3.36952 3.50970 3.83404 3.93415 4.02801 4.05374 4.07464 4.12287 4.19111 4.37344 4.45005 4.48935 4.58879 4.70648 4.80932 4.83063 4.88945 4.94768 4.98600 5.01599 5.10158 5.21488 5.26164 5.30143 5.37346 5.38151 5.47788 5.66564 5.93581 5.94781 6.13007 6.57462 6.76750 6.86200 7.34645 7.56843 8.90623 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.005457 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.897614 B = 5130.037185 C = 6046.245819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.264 3.736 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.010 3.990 8 N -0.929 5.929 9 Si 0.962 3.038 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.587 3.413 14 O -0.582 6.582 15 C -0.304 4.304 16 C 0.077 3.923 17 N -0.308 5.308 18 N -0.351 5.351 19 C 0.115 3.885 20 C -0.164 4.164 21 C 0.167 3.833 22 C -0.103 4.103 23 C -0.184 4.184 24 C -0.145 4.145 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.020 0.980 31 H 0.000 1.000 32 H 0.266 0.734 33 H 0.204 0.796 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.155 0.845 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 -9.601 18.729 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.325 5.325 4 C 0.143 3.857 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.188 4.188 8 N -0.569 5.569 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.376 3.624 14 O -0.464 6.464 15 C -0.319 4.319 16 C -0.109 4.109 17 N -0.128 5.128 18 N -0.131 5.131 19 C -0.004 4.004 20 C -0.222 4.222 21 C 0.034 3.966 22 C -0.122 4.122 23 C -0.222 4.222 24 C -0.183 4.183 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.038 0.962 31 H 0.018 0.982 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.173 0.827 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.982 -9.693 19.686 21.965 hybrid contribution 0.709 0.803 -1.702 2.011 sum 1.691 -8.891 17.983 20.132 Atomic orbital electron populations 1.22275 0.94471 1.03485 1.01798 1.21574 0.95392 0.81908 1.02745 1.48115 1.63712 1.14659 1.06055 1.18715 0.95659 0.91390 0.79899 1.21612 0.98193 1.31081 1.06327 0.92725 1.25793 1.01808 0.94542 0.96689 1.70053 1.37474 1.33791 1.15607 0.85546 0.79549 0.78801 0.77435 1.18794 1.20671 1.19835 1.17576 0.75974 0.85603 0.83232 1.90685 1.49893 1.18127 1.87679 1.20005 0.97273 1.15259 0.99348 1.24337 0.99242 0.94633 0.92697 1.77046 0.93818 1.25037 1.16852 1.48691 1.08497 1.39257 1.16683 1.22197 0.97329 1.00235 0.80675 1.22160 1.02731 0.98525 0.98818 1.20616 0.94764 0.93248 0.87926 1.20666 0.90686 0.98580 1.02273 1.23274 1.02516 1.04140 0.92223 1.23105 1.03983 0.89921 1.01242 0.88599 0.92336 0.93392 0.91105 0.90141 0.96209 0.98192 0.92564 0.77968 0.87022 0.86389 0.93170 0.87389 0.92715 0.82739 0.87097 0.90026 0.89916 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.71 71.98 0.70 -3.78 16 2 C 0.11 3.68 5.69 86.38 0.49 4.17 16 3 N -0.60 -26.58 2.46 -830.08 -2.04 -28.62 16 4 C 0.26 14.49 5.20 85.63 0.45 14.93 16 5 C -0.53 -30.59 9.39 25.60 0.24 -30.35 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.60 5.46 84.65 0.46 1.06 16 8 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.59 26.19 5.02 86.66 0.44 26.62 16 14 O -0.58 -30.47 12.77 -4.01 -0.05 -30.52 16 15 C -0.30 -10.93 4.65 -20.15 -0.09 -11.03 16 16 C 0.08 2.34 10.09 85.65 0.86 3.21 16 17 N -0.31 -8.84 12.50 -56.27 -0.70 -9.54 16 18 N -0.35 -8.93 3.58 -332.99 -1.19 -10.12 16 19 C 0.11 1.71 6.93 86.38 0.60 2.31 16 20 C -0.16 -2.17 10.24 71.98 0.74 -1.43 16 21 C 0.17 5.11 6.66 42.14 0.28 5.39 16 22 C -0.10 -2.79 5.94 -11.55 -0.07 -2.86 16 23 C -0.18 -6.46 9.49 30.62 0.29 -6.17 16 24 C -0.14 -4.49 9.62 30.62 0.29 -4.20 16 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.55 5.55 -2.38 -0.01 1.54 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 29 H 0.08 2.55 6.09 -2.39 -0.01 2.54 16 30 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 31 H 0.00 0.00 7.37 -2.39 -0.02 -0.02 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.20 5.28 5.28 -2.91 -0.02 5.26 16 34 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.12 1.19 7.12 -2.39 -0.02 1.17 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 39 H 0.16 2.80 7.22 -2.39 -0.02 2.79 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.39 16 41 H 0.08 3.74 4.56 -2.39 -0.01 3.73 16 42 H 0.08 3.20 6.42 -2.39 -0.02 3.19 16 43 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -75.30 346.55 5.01 -70.28 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.01 Total: 20.08 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 5.68 Total: -2.12 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -3.65 Total: -104.42 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -75.30 5.01 -70.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602918363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.273 kcal (2) G-P(sol) polarization free energy of solvation -75.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds