Wall clock time and date at job start Tue Mar 31 2020 07:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35527 * 125.67653 * 2 1 4 4 C 1.35456 * 108.87203 * 180.26665 * 3 2 1 5 5 C 1.39837 * 107.86099 * 359.76255 * 4 3 2 6 6 C 1.37650 * 125.67886 * 179.86512 * 2 1 3 7 7 C 1.46679 * 126.23310 * 0.02562 * 6 2 1 8 8 O 1.21697 * 119.99822 * 25.20816 * 7 6 2 9 9 N 1.34772 * 120.00191 * 205.21167 * 7 6 2 10 10 C 1.47081 * 120.87877 * 359.65405 * 9 7 6 11 11 C 1.53247 * 108.51939 * 129.09352 * 10 9 7 12 12 N 1.46904 * 109.33789 * 53.82939 * 11 10 9 13 13 C 1.46903 * 110.99752 * 172.74820 * 12 11 10 14 14 C 1.53000 * 109.46797 * 294.30173 * 13 12 11 15 15 C 1.50700 * 109.46806 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99948 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00008 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46790 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46797 * 119.99952 * 19 17 15 22 22 H 1.48497 * 109.47188 * 240.00186 * 19 17 15 23 23 C 1.46895 * 111.26913 * 296.89700 * 12 11 10 24 24 C 1.47086 * 120.88425 * 179.97438 * 9 7 6 25 25 H 1.08999 * 109.46819 * 264.57801 * 1 2 3 26 26 H 1.08999 * 109.47069 * 24.57686 * 1 2 3 27 27 H 1.09004 * 109.47197 * 144.57924 * 1 2 3 28 28 H 1.07999 * 125.56666 * 0.06772 * 3 2 1 29 29 H 1.07991 * 126.06854 * 179.74287 * 4 3 2 30 30 H 1.08002 * 126.45459 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.62905 * 248.80077 * 10 9 7 32 32 H 1.08993 * 109.62930 * 9.38540 * 10 9 7 33 33 H 1.09003 * 109.48941 * 293.87623 * 11 10 9 34 34 H 1.08994 * 109.49523 * 173.79006 * 11 10 9 35 35 H 1.09002 * 109.47080 * 54.29739 * 13 12 11 36 36 H 1.09001 * 109.47116 * 174.30264 * 13 12 11 37 37 H 1.08998 * 109.47212 * 300.00086 * 14 13 12 38 38 H 1.09001 * 109.47214 * 60.00150 * 14 13 12 39 39 H 0.97001 * 120.00100 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.49366 * 303.14554 * 23 12 11 41 41 H 1.08999 * 109.49396 * 183.06873 * 23 12 11 42 42 H 1.09001 * 109.62507 * 350.62098 * 24 9 7 43 43 H 1.08999 * 109.62946 * 111.19703 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 -0.0060 5 6 3.5780 -0.6888 -0.0043 6 6 2.2679 -1.1181 0.0026 7 6 1.8125 -2.5124 0.0054 8 8 0.7173 -2.7957 -0.4433 9 7 2.6068 -3.4798 0.5049 10 6 3.9370 -3.1603 1.0451 11 6 4.0587 -3.7840 2.4396 12 7 3.7485 -5.2177 2.3600 13 6 4.0197 -5.8868 3.6394 14 6 5.5218 -5.8471 3.9273 15 6 5.7999 -6.5329 5.2401 16 1 4.9865 -6.9545 5.8120 17 6 7.0927 -6.6221 5.7110 18 7 8.0830 -6.1083 5.0148 19 14 7.4374 -7.4716 7.3386 20 1 6.1620 -7.9602 7.9217 21 1 8.3505 -8.6207 7.1135 22 1 8.0735 -6.5096 8.2741 23 6 2.3605 -5.4398 1.9336 24 6 2.1695 -4.8841 0.5178 25 1 -0.3633 -0.0971 1.0231 26 1 -0.3633 0.9346 -0.4274 27 1 -0.3634 -0.8375 -0.5956 28 1 1.9082 2.1235 0.0010 29 1 4.4132 1.3611 -0.0114 30 1 4.4583 -1.3144 -0.0083 31 1 4.7062 -3.5718 0.3915 32 1 4.0532 -2.0789 1.1163 33 1 3.3579 -3.2974 3.1180 34 1 5.0753 -3.6518 2.8097 35 1 3.4830 -5.3747 4.4381 36 1 3.6874 -6.9235 3.5848 37 1 6.0585 -6.3590 3.1286 38 1 5.8540 -4.8104 3.9819 39 1 8.9925 -6.1707 5.3463 40 1 1.6834 -4.9301 2.6191 41 1 2.1455 -6.5083 1.9368 42 1 1.1170 -4.9423 0.2402 43 1 2.7691 -5.4609 -0.1863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603849768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:50 Heat of formation + Delta-G solvation = 41.115141 kcal Electronic energy + Delta-G solvation = -23400.624380 eV Core-core repulsion = 20061.544057 eV Total energy + Delta-G solvation = -3339.080323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63399 -39.60936 -37.73919 -35.01980 -33.23730 -32.75856 -31.42930 -29.95051 -29.21681 -26.94841 -26.61742 -24.14656 -23.66372 -22.55721 -20.90093 -20.50127 -20.03071 -19.04122 -17.27138 -16.65201 -16.22494 -15.80361 -15.60291 -14.92043 -14.85644 -14.58525 -14.31301 -14.16907 -13.90963 -13.61047 -13.35715 -13.21516 -12.82944 -12.51762 -12.33503 -12.24703 -12.17223 -11.71100 -11.31783 -11.23376 -11.02756 -10.95412 -10.67033 -10.53764 -9.94047 -9.88771 -9.44414 -9.13191 -8.85309 -8.72064 -8.35323 -8.30494 -7.78943 -6.01805 -4.04044 1.39697 2.41111 2.60929 3.16143 3.23295 3.30027 3.37705 3.41483 4.31372 4.43893 4.50490 4.58827 4.81881 4.99091 5.07692 5.14721 5.23275 5.23986 5.34287 5.37685 5.40664 5.42010 5.54359 5.62562 5.82375 5.90698 5.95947 6.03461 6.10939 6.17783 6.28850 6.40988 6.51085 6.65500 6.82243 6.91797 7.03154 7.30526 7.46797 7.48913 7.75289 7.85639 8.04603 8.09228 8.40914 9.03060 9.59836 11.09500 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.003250 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.953018 B = 8613.412020 C = 9281.805901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.414 5.414 3 C 0.009 3.991 4 C -0.206 4.206 5 C -0.153 4.153 6 C -0.046 4.046 7 C 0.588 3.412 8 O -0.559 6.559 9 N -0.594 5.594 10 C 0.079 3.921 11 C 0.041 3.959 12 N -0.538 5.538 13 C 0.063 3.937 14 C 0.028 3.972 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.041 3.959 24 C 0.120 3.880 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.167 0.833 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.030 0.970 34 H 0.102 0.898 35 H 0.020 0.980 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.017 0.983 39 H 0.260 0.740 40 H 0.030 0.970 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.419 13.273 -11.105 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.087 5.087 3 C -0.126 4.126 4 C -0.230 4.230 5 C -0.179 4.179 6 C -0.159 4.159 7 C 0.378 3.622 8 O -0.440 6.440 9 N -0.325 5.325 10 C -0.043 4.043 11 C -0.088 4.088 12 N -0.262 5.262 13 C -0.063 4.063 14 C -0.009 4.009 15 C -0.561 4.561 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.088 4.088 24 C -0.002 4.002 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.178 0.822 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.048 0.952 34 H 0.120 0.880 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.917 12.888 -11.677 21.663 hybrid contribution -0.170 -0.069 1.640 1.651 sum -13.087 12.819 -10.037 20.889 Atomic orbital electron populations 1.22259 0.76369 1.05087 1.03996 1.43829 1.06674 1.04998 1.53166 1.22014 0.90787 0.91383 1.08396 1.20889 0.96030 0.95088 1.10971 1.21779 0.94906 0.95534 1.05685 1.20035 0.90639 0.87498 1.17753 1.17017 0.83885 0.83576 0.77763 1.90744 1.21492 1.83347 1.48438 1.47869 1.17836 1.07321 1.59499 1.22923 0.83137 1.02928 0.95350 1.22517 1.02941 0.88330 0.95029 1.62082 1.20396 1.10875 1.32891 1.22353 1.01087 0.96895 0.86009 1.19105 0.88051 0.97317 0.96441 1.21219 0.92717 1.36751 1.05411 0.92788 1.24985 0.96335 0.95644 0.97312 1.69972 0.99523 1.45460 1.38182 0.86551 0.78280 0.79359 0.83885 1.19805 1.20976 1.21028 1.22456 0.90378 1.01040 0.94948 1.21782 1.01223 0.79757 0.97468 0.90855 0.89720 0.87970 0.81527 0.83834 0.82215 0.90083 0.86558 0.95173 0.88040 0.96218 0.91921 0.95611 0.96454 0.93031 0.95151 0.89657 0.89079 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.74 59.85 0.64 1.20 16 2 N -0.41 -4.64 3.16 -120.23 -0.38 -5.02 16 3 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 4 C -0.21 -2.06 10.81 -39.98 -0.43 -2.50 16 5 C -0.15 -1.77 8.57 -39.12 -0.34 -2.11 16 6 C -0.05 -0.60 6.54 -81.98 -0.54 -1.14 16 7 C 0.59 8.76 7.57 -12.85 -0.10 8.66 16 8 O -0.56 -9.40 14.51 5.19 0.08 -9.32 16 9 N -0.59 -8.42 3.01 -173.97 -0.52 -8.95 16 10 C 0.08 1.05 5.47 -3.60 -0.02 1.03 16 11 C 0.04 0.66 5.46 -3.69 -0.02 0.63 16 12 N -0.54 -9.43 4.63 -234.28 -1.08 -10.52 16 13 C 0.06 1.30 4.90 -3.82 -0.02 1.28 16 14 C 0.03 0.71 4.90 -27.88 -0.14 0.57 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.04 0.61 5.62 -3.68 -0.02 0.59 16 24 C 0.12 1.65 6.60 -3.58 -0.02 1.62 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.10 1.08 6.43 -51.93 -0.33 0.74 16 28 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.16 1.64 5.70 -52.49 -0.30 1.34 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.12 1.39 3.50 -51.93 -0.18 1.21 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.78 6.16 -51.93 -0.32 1.46 16 35 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.06 1.27 7.97 -51.93 -0.41 0.86 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.02 0.45 6.40 -51.93 -0.33 0.12 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.17 7.99 -51.93 -0.41 0.76 16 42 H 0.09 1.23 7.06 -51.93 -0.37 0.87 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -32.67 341.06 -9.09 -41.76 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.43 Total: -0.32 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.60 Total: -3.55 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -1.25 Total: -50.10 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.67 -9.09 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603849768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.875 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds