Wall clock time and date at job start Tue Mar 31 2020 07:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35527 * 125.67653 * 2 1 4 4 C 1.35456 * 108.87203 * 180.26665 * 3 2 1 5 5 C 1.39837 * 107.86099 * 359.76255 * 4 3 2 6 6 C 1.37650 * 125.67886 * 179.86512 * 2 1 3 7 7 C 1.46679 * 126.23310 * 0.02562 * 6 2 1 8 8 O 1.21697 * 119.99822 * 25.20816 * 7 6 2 9 9 N 1.34772 * 120.00191 * 205.21167 * 7 6 2 10 10 C 1.47081 * 120.87877 * 359.65405 * 9 7 6 11 11 C 1.53247 * 108.51939 * 129.09352 * 10 9 7 12 12 N 1.46904 * 109.33789 * 53.82939 * 11 10 9 13 13 C 1.46903 * 110.99752 * 172.74820 * 12 11 10 14 14 C 1.53000 * 109.46797 * 294.30173 * 13 12 11 15 15 C 1.50700 * 109.46806 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99948 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00008 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46790 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46797 * 119.99952 * 19 17 15 22 22 H 1.48497 * 109.47188 * 240.00186 * 19 17 15 23 23 C 1.46895 * 111.26913 * 296.89700 * 12 11 10 24 24 C 1.47086 * 120.88425 * 179.97438 * 9 7 6 25 25 H 1.08999 * 109.46819 * 264.57801 * 1 2 3 26 26 H 1.08999 * 109.47069 * 24.57686 * 1 2 3 27 27 H 1.09004 * 109.47197 * 144.57924 * 1 2 3 28 28 H 1.07999 * 125.56666 * 0.06772 * 3 2 1 29 29 H 1.07991 * 126.06854 * 179.74287 * 4 3 2 30 30 H 1.08002 * 126.45459 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.62905 * 248.80077 * 10 9 7 32 32 H 1.08993 * 109.62930 * 9.38540 * 10 9 7 33 33 H 1.09003 * 109.48941 * 293.87623 * 11 10 9 34 34 H 1.08994 * 109.49523 * 173.79006 * 11 10 9 35 35 H 1.09002 * 109.47080 * 54.29739 * 13 12 11 36 36 H 1.09001 * 109.47116 * 174.30264 * 13 12 11 37 37 H 1.08998 * 109.47212 * 300.00086 * 14 13 12 38 38 H 1.09001 * 109.47214 * 60.00150 * 14 13 12 39 39 H 0.97001 * 120.00100 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.49366 * 303.14554 * 23 12 11 41 41 H 1.08999 * 109.49396 * 183.06873 * 23 12 11 42 42 H 1.09001 * 109.62507 * 350.62098 * 24 9 7 43 43 H 1.08999 * 109.62946 * 111.19703 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 -0.0060 5 6 3.5780 -0.6888 -0.0043 6 6 2.2679 -1.1181 0.0026 7 6 1.8125 -2.5124 0.0054 8 8 0.7173 -2.7957 -0.4433 9 7 2.6068 -3.4798 0.5049 10 6 3.9370 -3.1603 1.0451 11 6 4.0587 -3.7840 2.4396 12 7 3.7485 -5.2177 2.3600 13 6 4.0197 -5.8868 3.6394 14 6 5.5218 -5.8471 3.9273 15 6 5.7999 -6.5329 5.2401 16 1 4.9865 -6.9545 5.8120 17 6 7.0927 -6.6221 5.7110 18 7 8.0830 -6.1083 5.0148 19 14 7.4374 -7.4716 7.3386 20 1 6.1620 -7.9602 7.9217 21 1 8.3505 -8.6207 7.1135 22 1 8.0735 -6.5096 8.2741 23 6 2.3605 -5.4398 1.9336 24 6 2.1695 -4.8841 0.5178 25 1 -0.3633 -0.0971 1.0231 26 1 -0.3633 0.9346 -0.4274 27 1 -0.3634 -0.8375 -0.5956 28 1 1.9082 2.1235 0.0010 29 1 4.4132 1.3611 -0.0114 30 1 4.4583 -1.3144 -0.0083 31 1 4.7062 -3.5718 0.3915 32 1 4.0532 -2.0789 1.1163 33 1 3.3579 -3.2974 3.1180 34 1 5.0753 -3.6518 2.8097 35 1 3.4830 -5.3747 4.4381 36 1 3.6874 -6.9235 3.5848 37 1 6.0585 -6.3590 3.1286 38 1 5.8540 -4.8104 3.9819 39 1 8.9925 -6.1707 5.3463 40 1 1.6834 -4.9301 2.6191 41 1 2.1455 -6.5083 1.9368 42 1 1.1170 -4.9423 0.2402 43 1 2.7691 -5.4609 -0.1863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603849768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:50 Heat of formation + Delta-G solvation = 20.291776 kcal Electronic energy + Delta-G solvation = -23401.527349 eV Core-core repulsion = 20061.544057 eV Total energy + Delta-G solvation = -3339.983292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.50161 -40.72681 -39.03797 -36.41823 -34.96980 -33.82867 -32.62322 -31.62801 -30.26263 -28.32427 -27.44115 -25.90373 -24.87794 -23.79882 -22.08773 -21.76845 -21.24810 -20.03692 -18.60367 -18.20184 -17.53334 -16.82189 -16.61656 -16.47360 -16.22020 -15.85976 -15.75195 -15.53772 -14.95143 -14.77230 -14.49642 -14.27300 -14.06793 -13.86225 -13.57007 -13.26182 -13.20401 -13.01834 -12.86890 -12.82702 -12.57703 -12.33614 -12.31598 -11.94104 -11.75375 -11.30582 -11.20967 -11.05402 -10.51672 -9.92442 -9.64909 -9.26220 -9.12693 -8.18173 -6.28541 0.46631 1.41401 1.42102 1.51664 1.54710 1.81826 2.20451 2.24225 2.41752 2.99989 3.15493 3.43421 3.88147 3.94836 3.96421 4.11283 4.20262 4.22764 4.29379 4.33799 4.42517 4.51565 4.52957 4.56828 4.66541 4.69010 4.72327 4.78968 4.85279 5.00714 5.08622 5.13825 5.25707 5.36267 5.47297 5.67592 5.77381 5.83037 5.98580 6.05950 6.18465 6.27158 6.32429 6.35410 6.88139 6.98725 7.40173 8.93775 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.003250 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.953018 B = 8613.412020 C = 9281.805901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.421 5.421 3 C 0.024 3.976 4 C -0.220 4.220 5 C -0.155 4.155 6 C -0.086 4.086 7 C 0.585 3.415 8 O -0.586 6.586 9 N -0.597 5.597 10 C 0.090 3.910 11 C 0.043 3.957 12 N -0.545 5.545 13 C 0.079 3.921 14 C 0.038 3.962 15 C -0.544 4.544 16 H 0.057 0.943 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.963 3.037 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.046 3.954 24 C 0.124 3.876 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.206 0.794 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.016 0.984 36 H 0.067 0.933 37 H -0.004 1.004 38 H -0.001 1.001 39 H 0.264 0.736 40 H 0.026 0.974 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.009 14.488 -10.909 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.094 5.094 3 C -0.111 4.111 4 C -0.243 4.243 5 C -0.181 4.181 6 C -0.199 4.199 7 C 0.376 3.624 8 O -0.469 6.469 9 N -0.328 5.328 10 C -0.031 4.031 11 C -0.086 4.086 12 N -0.269 5.269 13 C -0.048 4.048 14 C 0.000 4.000 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.083 4.083 24 C 0.002 3.998 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.098 0.902 28 H 0.223 0.777 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.520 14.098 -11.487 22.660 hybrid contribution 0.011 -0.359 1.533 1.575 sum -13.509 13.740 -9.954 21.687 Atomic orbital electron populations 1.22364 0.75332 1.06054 1.04078 1.44101 1.07538 1.04916 1.52877 1.22718 0.90437 0.92434 1.05496 1.21248 0.97333 0.94567 1.11135 1.21992 0.94543 0.96716 1.04834 1.19964 0.91719 0.87241 1.20958 1.17321 0.83446 0.84431 0.77159 1.90718 1.22568 1.83899 1.49723 1.47929 1.17969 1.07464 1.59462 1.22887 0.83046 1.03695 0.93515 1.22484 1.01574 0.87727 0.96773 1.62008 1.22415 1.11537 1.30981 1.21993 0.97716 0.97567 0.87504 1.18918 0.90889 0.95460 0.94718 1.21637 0.93153 1.37025 1.06460 0.92479 1.25894 0.96140 0.96272 1.01122 1.70093 1.00018 1.46587 1.40081 0.85438 0.78379 0.78242 0.79202 1.18826 1.20403 1.20374 1.22490 0.88389 1.02027 0.95395 1.21752 1.01592 0.79807 0.96693 0.90582 0.86172 0.90206 0.77681 0.81695 0.81646 0.89540 0.84904 0.95680 0.89933 0.96560 0.91492 0.98520 0.98228 0.92753 0.95568 0.88276 0.88758 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 10.74 127.77 1.37 2.37 16 2 N -0.42 -8.72 3.16 -534.31 -1.69 -10.41 16 3 C 0.02 0.38 11.37 83.48 0.95 1.33 16 4 C -0.22 -3.85 10.81 22.01 0.24 -3.61 16 5 C -0.15 -3.38 8.57 22.57 0.19 -3.18 16 6 C -0.09 -2.20 6.54 40.35 0.26 -1.93 16 7 C 0.59 17.39 7.57 86.45 0.65 18.05 16 8 O -0.59 -19.89 14.51 -4.34 -0.06 -19.95 16 9 N -0.60 -16.79 3.01 -822.53 -2.47 -19.27 16 10 C 0.09 2.39 5.47 86.35 0.47 2.87 16 11 C 0.04 1.42 5.46 86.38 0.47 1.89 16 12 N -0.54 -19.22 4.63 -895.13 -4.14 -23.37 16 13 C 0.08 3.31 4.90 86.30 0.42 3.74 16 14 C 0.04 1.95 4.90 29.85 0.15 2.10 16 15 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 16 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 17 C 0.00 0.23 5.46 84.66 0.46 0.69 16 18 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 19 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.05 1.33 5.62 86.40 0.49 1.82 16 24 C 0.12 3.34 6.60 86.36 0.57 3.91 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.12 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.08 1.67 6.43 -2.38 -0.02 1.65 16 28 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.17 2.09 8.06 -2.92 -0.02 2.07 16 30 H 0.17 3.23 5.70 -2.91 -0.02 3.21 16 31 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.13 3.11 3.50 -2.39 -0.01 3.10 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 3.02 6.16 -2.39 -0.01 3.01 16 35 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 36 H 0.07 2.71 7.97 -2.39 -0.02 2.69 16 37 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.00 -0.03 6.40 -2.39 -0.02 -0.04 16 39 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.10 2.61 7.99 -2.39 -0.02 2.59 16 42 H 0.09 2.52 7.06 -2.39 -0.02 2.50 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.04 341.06 1.88 -69.16 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.00 Total: 13.67 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 6.94 Total: -0.42 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -8.02 Total: -108.36 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.06 Total: -19.95 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.04 1.88 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603849768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.455 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds