Wall clock time and date at job start Tue Mar 31 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28827 * 125.15244 * 2 1 4 4 C 1.30105 * 110.78291 * 180.24541 * 3 2 1 5 5 C 1.40093 * 107.72288 * 359.82190 * 4 3 2 6 6 C 1.36997 * 125.14997 * 179.80471 * 2 1 3 7 7 C 1.47166 * 127.04712 * 359.95106 * 6 2 1 8 8 O 1.21627 * 119.99813 * 92.62852 * 7 6 2 9 9 N 1.34769 * 119.99960 * 272.91035 * 7 6 2 10 10 C 1.46502 * 119.99799 * 185.01535 * 9 7 6 11 11 C 1.53004 * 109.47057 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47076 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47037 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00196 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99977 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00184 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00182 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47294 * 60.00140 * 17 15 13 19 19 H 1.48504 * 109.47303 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47105 * 300.00151 * 17 15 13 21 21 C 1.50395 * 124.20572 * 179.70296 * 5 4 3 22 22 C 1.53500 * 108.11897 * 343.84730 * 21 5 4 23 23 C 1.53031 * 109.68585 * 50.01502 * 22 21 5 24 24 C 1.50862 * 129.06081 * 180.02562 * 4 3 2 25 25 H 1.08991 * 109.47539 * 274.94751 * 1 2 3 26 26 H 1.09004 * 109.46696 * 34.94702 * 1 2 3 27 27 H 1.08999 * 109.46914 * 154.94144 * 1 2 3 28 28 H 0.97001 * 120.00610 * 5.01004 * 9 7 6 29 29 H 1.09009 * 109.46947 * 299.99628 * 10 9 7 30 30 H 1.08996 * 109.47472 * 59.99072 * 10 9 7 31 31 H 1.08995 * 109.47040 * 299.99716 * 11 10 9 32 32 H 1.09000 * 109.47187 * 59.99962 * 11 10 9 33 33 H 1.09001 * 109.47259 * 300.00233 * 12 11 10 34 34 H 1.09005 * 109.47202 * 59.99580 * 12 11 10 35 35 H 0.96996 * 120.00514 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.73146 * 103.50387 * 21 5 4 37 37 H 1.08993 * 109.73477 * 224.19144 * 21 5 4 38 38 H 1.08996 * 109.43713 * 289.94666 * 22 21 5 39 39 H 1.08996 * 109.43437 * 170.07894 * 22 21 5 40 40 H 1.09002 * 109.40414 * 168.42677 * 23 22 21 41 41 H 1.09000 * 109.40665 * 48.67883 * 23 22 21 42 42 H 1.08999 * 109.72603 * 282.78973 * 24 4 3 43 43 H 1.09004 * 109.71900 * 43.39670 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2067 1.0533 0.0000 4 6 3.4671 0.7304 -0.0052 5 6 3.5490 -0.6681 -0.0048 6 6 2.2537 -1.1201 0.0038 7 6 1.8038 -2.5213 0.0096 8 8 1.6631 -3.1192 -1.0402 9 7 1.5421 -3.1402 1.1778 10 6 1.2009 -4.5649 1.1916 11 6 0.9533 -5.0161 2.6325 12 6 0.5963 -6.5038 2.6469 13 6 0.3531 -6.9483 4.0661 14 1 0.4437 -6.2405 4.8767 15 6 0.0139 -8.2584 4.3297 16 7 -0.0969 -9.1204 3.3425 17 14 -0.2883 -8.8093 6.0887 18 1 -1.4089 -8.0254 6.6675 19 1 -0.6347 -10.2533 6.1027 20 1 0.9391 -8.5874 6.8947 21 6 4.8401 -1.4394 -0.0163 22 6 5.9646 -0.4815 -0.4337 23 6 5.8955 0.7934 0.4100 24 6 4.6787 1.6293 -0.0067 25 1 -0.3634 0.0886 1.0237 26 1 -0.3633 0.8424 -0.5887 27 1 -0.3633 -0.9309 -0.4353 28 1 1.5798 -2.6425 2.0096 29 1 0.3004 -4.7285 0.5995 30 1 2.0240 -5.1398 0.7675 31 1 1.8539 -4.8525 3.2243 32 1 0.1303 -4.4411 3.0570 33 1 -0.3045 -6.6670 2.0552 34 1 1.4190 -7.0790 2.2222 35 1 -0.3359 -10.0420 3.5278 36 1 5.0426 -1.8329 0.9798 37 1 4.7721 -2.2602 -0.7302 38 1 5.8511 -0.2259 -1.4871 39 1 6.9290 -0.9658 -0.2805 40 1 6.8040 1.3766 0.2600 41 1 5.8078 0.5264 1.4631 42 1 4.8354 2.0338 -1.0067 43 1 4.5322 2.4452 0.7011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610805656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:21 Heat of formation + Delta-G solvation = 10.024462 kcal Electronic energy + Delta-G solvation = -22792.427604 eV Core-core repulsion = 19451.999088 eV Total energy + Delta-G solvation = -3340.428516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.76958 -39.34090 -37.23485 -35.53593 -33.42831 -32.91101 -32.17851 -31.21026 -29.38438 -27.53247 -26.77369 -23.96548 -23.52145 -22.36422 -21.97712 -20.76859 -19.60473 -19.26721 -17.63114 -16.69741 -16.35202 -16.04815 -15.56625 -15.30968 -14.95493 -14.54216 -14.43066 -14.05056 -13.92810 -13.63545 -13.26556 -13.13179 -12.97281 -12.69491 -12.33206 -12.01237 -11.92239 -11.81610 -11.44615 -11.07673 -11.00176 -10.92342 -10.81394 -10.68209 -10.36450 -10.23032 -9.93797 -9.48870 -9.19833 -9.11379 -8.97324 -8.71074 -8.40952 -6.05685 -4.09181 1.58216 2.01186 2.48045 2.68101 3.25000 3.29406 3.34489 3.36497 4.08710 4.40787 4.54257 4.61890 4.69098 4.72740 4.86411 4.92594 5.12205 5.14401 5.29553 5.30100 5.35800 5.37885 5.44736 5.59682 5.66450 5.68164 5.73702 5.84773 5.91525 6.05317 6.06738 6.12198 6.28686 6.44289 6.50131 6.63707 6.71404 6.91423 7.47196 7.57997 7.69913 7.92302 7.95176 8.10077 8.33328 8.97166 9.55290 11.05528 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.002866 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.907296 B = 9766.435370 C =10176.494417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.285 5.285 3 N -0.279 5.279 4 C 0.033 3.967 5 C -0.156 4.156 6 C -0.018 4.018 7 C 0.586 3.414 8 O -0.524 6.524 9 N -0.710 5.710 10 C 0.115 3.885 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.049 4.049 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.030 4.030 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.401 0.599 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.388 21.578 -6.333 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.073 5.073 3 N -0.108 5.108 4 C -0.127 4.127 5 C -0.166 4.166 6 C -0.145 4.145 7 C 0.368 3.632 8 O -0.399 6.399 9 N -0.360 5.360 10 C -0.007 4.007 11 C -0.159 4.159 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.087 4.087 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.069 4.069 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.236 0.764 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.314 21.815 -7.136 24.090 hybrid contribution 0.068 -0.865 1.349 1.604 sum 7.383 20.950 -5.787 22.954 Atomic orbital electron populations 1.22152 0.73058 1.05375 1.04520 1.45681 1.07173 1.01437 1.53012 1.72773 1.03659 1.13302 1.21110 1.21842 0.91943 0.93227 1.05689 1.20315 0.93146 0.94168 1.09017 1.21035 0.91716 0.89064 1.12664 1.17034 0.77649 0.83959 0.84541 1.90854 1.51067 1.66425 1.31537 1.46238 1.68905 1.12576 1.08302 1.21780 1.00937 0.77835 1.00189 1.21906 1.00797 1.01201 0.91989 1.19021 0.97098 0.87772 0.97385 1.21153 1.47489 0.94891 0.92755 0.92686 1.25023 0.95408 0.96818 0.97138 1.69948 1.48087 1.04034 1.31173 0.86638 0.78712 0.77583 0.84945 1.20242 1.21238 1.20207 1.20029 0.89557 0.96918 1.02171 1.21568 0.98082 0.95554 1.00144 1.21572 0.97089 0.96314 1.00470 1.19987 0.88702 0.95751 1.02433 0.89589 0.88497 0.88807 0.76440 0.91314 0.91318 0.92551 0.92667 0.96246 0.96204 0.92814 0.90507 0.90636 0.91625 0.91205 0.91045 0.91428 0.90265 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.22 59.85 0.67 1.47 16 2 N -0.28 -3.62 3.77 -64.10 -0.24 -3.86 16 3 N -0.28 -3.69 11.89 33.65 0.40 -3.29 16 4 C 0.03 0.41 7.13 -82.55 -0.59 -0.18 16 5 C -0.16 -2.01 6.02 -104.45 -0.63 -2.64 16 6 C -0.02 -0.25 6.70 -82.31 -0.55 -0.80 16 7 C 0.59 9.04 6.95 -12.64 -0.09 8.95 16 8 O -0.52 -9.97 17.12 5.25 0.09 -9.88 16 9 N -0.71 -10.06 5.55 -61.46 -0.34 -10.40 16 10 C 0.11 1.92 5.68 -4.04 -0.02 1.90 16 11 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.05 -0.53 6.22 -27.77 -0.17 -0.70 16 22 C -0.12 -0.96 5.88 -26.46 -0.16 -1.11 16 23 C -0.12 -0.85 5.85 -26.51 -0.16 -1.01 16 24 C -0.03 -0.26 6.31 -27.60 -0.17 -0.43 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.85 7.67 -51.93 -0.40 0.46 16 28 H 0.40 4.84 8.46 -40.82 -0.35 4.49 16 29 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -33.23 357.62 -8.59 -41.82 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.05 Total: -0.59 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.56 Total: -9.67 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.55 Total: -43.27 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.23 -8.59 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610805656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.845 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds