Wall clock time and date at job start Tue Mar 31 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28827 * 125.15244 * 2 1 4 4 C 1.30105 * 110.78291 * 180.24541 * 3 2 1 5 5 C 1.40093 * 107.72288 * 359.82190 * 4 3 2 6 6 C 1.36997 * 125.14997 * 179.80471 * 2 1 3 7 7 C 1.47166 * 127.04712 * 359.95106 * 6 2 1 8 8 O 1.21627 * 119.99813 * 92.62852 * 7 6 2 9 9 N 1.34769 * 119.99960 * 272.91035 * 7 6 2 10 10 C 1.46502 * 119.99799 * 185.01535 * 9 7 6 11 11 C 1.53004 * 109.47057 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47076 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47037 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00196 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99977 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00184 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00182 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47294 * 60.00140 * 17 15 13 19 19 H 1.48504 * 109.47303 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47105 * 300.00151 * 17 15 13 21 21 C 1.50395 * 124.20572 * 179.70296 * 5 4 3 22 22 C 1.53500 * 108.11897 * 343.84730 * 21 5 4 23 23 C 1.53031 * 109.68585 * 50.01502 * 22 21 5 24 24 C 1.50862 * 129.06081 * 180.02562 * 4 3 2 25 25 H 1.08991 * 109.47539 * 274.94751 * 1 2 3 26 26 H 1.09004 * 109.46696 * 34.94702 * 1 2 3 27 27 H 1.08999 * 109.46914 * 154.94144 * 1 2 3 28 28 H 0.97001 * 120.00610 * 5.01004 * 9 7 6 29 29 H 1.09009 * 109.46947 * 299.99628 * 10 9 7 30 30 H 1.08996 * 109.47472 * 59.99072 * 10 9 7 31 31 H 1.08995 * 109.47040 * 299.99716 * 11 10 9 32 32 H 1.09000 * 109.47187 * 59.99962 * 11 10 9 33 33 H 1.09001 * 109.47259 * 300.00233 * 12 11 10 34 34 H 1.09005 * 109.47202 * 59.99580 * 12 11 10 35 35 H 0.96996 * 120.00514 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.73146 * 103.50387 * 21 5 4 37 37 H 1.08993 * 109.73477 * 224.19144 * 21 5 4 38 38 H 1.08996 * 109.43713 * 289.94666 * 22 21 5 39 39 H 1.08996 * 109.43437 * 170.07894 * 22 21 5 40 40 H 1.09002 * 109.40414 * 168.42677 * 23 22 21 41 41 H 1.09000 * 109.40665 * 48.67883 * 23 22 21 42 42 H 1.08999 * 109.72603 * 282.78973 * 24 4 3 43 43 H 1.09004 * 109.71900 * 43.39670 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2067 1.0533 0.0000 4 6 3.4671 0.7304 -0.0052 5 6 3.5490 -0.6681 -0.0048 6 6 2.2537 -1.1201 0.0038 7 6 1.8038 -2.5213 0.0096 8 8 1.6631 -3.1192 -1.0402 9 7 1.5421 -3.1402 1.1778 10 6 1.2009 -4.5649 1.1916 11 6 0.9533 -5.0161 2.6325 12 6 0.5963 -6.5038 2.6469 13 6 0.3531 -6.9483 4.0661 14 1 0.4437 -6.2405 4.8767 15 6 0.0139 -8.2584 4.3297 16 7 -0.0969 -9.1204 3.3425 17 14 -0.2883 -8.8093 6.0887 18 1 -1.4089 -8.0254 6.6675 19 1 -0.6347 -10.2533 6.1027 20 1 0.9391 -8.5874 6.8947 21 6 4.8401 -1.4394 -0.0163 22 6 5.9646 -0.4815 -0.4337 23 6 5.8955 0.7934 0.4100 24 6 4.6787 1.6293 -0.0067 25 1 -0.3634 0.0886 1.0237 26 1 -0.3633 0.8424 -0.5887 27 1 -0.3633 -0.9309 -0.4353 28 1 1.5798 -2.6425 2.0096 29 1 0.3004 -4.7285 0.5995 30 1 2.0240 -5.1398 0.7675 31 1 1.8539 -4.8525 3.2243 32 1 0.1303 -4.4411 3.0570 33 1 -0.3045 -6.6670 2.0552 34 1 1.4190 -7.0790 2.2222 35 1 -0.3359 -10.0420 3.5278 36 1 5.0426 -1.8329 0.9798 37 1 4.7721 -2.2602 -0.7302 38 1 5.8511 -0.2259 -1.4871 39 1 6.9290 -0.9658 -0.2805 40 1 6.8040 1.3766 0.2600 41 1 5.8078 0.5264 1.4631 42 1 4.8354 2.0338 -1.0067 43 1 4.5322 2.4452 0.7011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610805656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:21 Heat of formation + Delta-G solvation = -11.024212 kcal Electronic energy + Delta-G solvation = -22793.340343 eV Core-core repulsion = 19451.999088 eV Total energy + Delta-G solvation = -3341.341255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.71585 -40.64289 -37.96907 -37.07227 -35.26654 -33.83161 -33.27612 -32.69286 -30.32988 -28.69015 -28.12716 -25.51233 -24.40250 -23.52954 -22.94052 -22.38376 -20.77898 -20.10454 -18.75459 -18.47638 -17.62207 -17.05093 -16.87077 -16.55573 -16.42021 -15.84020 -15.50279 -15.19539 -14.78832 -14.69535 -14.30453 -14.15551 -13.86035 -13.78806 -13.70879 -13.57111 -13.42605 -12.73319 -12.71926 -12.58890 -12.44970 -12.28379 -11.79280 -11.70639 -11.68940 -11.61665 -11.33537 -11.18025 -11.14800 -10.54921 -10.31555 -10.10015 -9.62028 -8.19820 -6.31224 0.56562 0.94032 1.41860 1.44386 1.52194 1.55145 1.60041 2.09250 2.42126 3.14139 3.27234 3.45097 3.90561 4.02498 4.03729 4.08906 4.13809 4.16469 4.22073 4.33161 4.48341 4.50865 4.54139 4.61922 4.66840 4.69595 4.86838 4.90411 4.99496 5.06928 5.14292 5.19890 5.23858 5.25061 5.31207 5.50316 5.50663 5.57436 5.69675 5.75903 5.83678 6.20613 6.27361 6.86046 6.88615 7.00532 7.38458 8.91976 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.002866 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.907296 B = 9766.435370 C =10176.494417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.287 5.287 3 N -0.291 5.291 4 C 0.027 3.973 5 C -0.163 4.163 6 C -0.040 4.040 7 C 0.596 3.404 8 O -0.565 6.565 9 N -0.694 5.694 10 C 0.128 3.872 11 C -0.102 4.102 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.052 4.052 22 C -0.113 4.113 23 C -0.111 4.111 24 C -0.031 4.031 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.415 0.585 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.069 0.931 33 H -0.006 1.006 34 H -0.006 1.006 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 23.565 -4.779 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.075 5.075 3 N -0.121 5.121 4 C -0.133 4.133 5 C -0.174 4.174 6 C -0.167 4.167 7 C 0.380 3.620 8 O -0.443 6.443 9 N -0.345 5.345 10 C 0.005 3.995 11 C -0.140 4.140 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.091 4.091 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.069 4.069 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.252 0.748 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.192 23.842 -5.552 25.814 hybrid contribution -0.217 -1.464 0.821 1.693 sum 7.975 22.378 -4.730 24.223 Atomic orbital electron populations 1.22423 0.71433 1.05864 1.06129 1.45988 1.08182 1.00825 1.52522 1.72774 1.04298 1.13472 1.21553 1.22454 0.92597 0.93479 1.04760 1.20690 0.93412 0.94949 1.08344 1.20874 0.92641 0.88488 1.14702 1.17151 0.76544 0.84460 0.83892 1.90831 1.52899 1.67572 1.32974 1.45969 1.68241 1.11463 1.08853 1.21413 1.00206 0.79174 0.98682 1.21609 1.01723 0.97282 0.93367 1.18926 0.95023 0.91454 0.95874 1.21650 1.46955 0.95392 0.94074 0.91607 1.25991 0.95152 0.97072 1.01723 1.70094 1.49271 1.04413 1.33669 0.85500 0.79130 0.77007 0.79409 1.19072 1.21194 1.19056 1.20127 0.89857 0.97004 1.02064 1.21577 0.97686 0.95631 1.00126 1.21572 0.97541 0.95806 0.99983 1.20177 0.87635 0.95678 1.03442 0.87623 0.86811 0.89348 0.74803 0.92232 0.92361 0.91339 0.91280 0.98744 0.98766 0.92789 0.89995 0.92288 0.91909 0.89520 0.88460 0.91601 0.89259 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 11.22 127.77 1.43 2.80 16 2 N -0.29 -7.04 3.77 -356.72 -1.34 -8.38 16 3 N -0.29 -7.33 11.89 -47.46 -0.56 -7.90 16 4 C 0.03 0.62 7.13 43.32 0.31 0.93 16 5 C -0.16 -4.10 6.02 -19.76 -0.12 -4.22 16 6 C -0.04 -1.10 6.70 40.44 0.27 -0.83 16 7 C 0.60 18.49 6.95 86.59 0.60 19.09 16 8 O -0.57 -22.07 17.12 -4.12 -0.07 -22.14 16 9 N -0.69 -19.34 5.55 -466.62 -2.59 -21.93 16 10 C 0.13 4.33 5.68 86.38 0.49 4.82 16 11 C -0.10 -3.77 5.27 30.60 0.16 -3.61 16 12 C 0.02 1.26 4.97 29.85 0.15 1.41 16 13 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 14 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 17 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 C -0.05 -1.10 6.22 29.92 0.19 -0.91 16 22 C -0.11 -1.65 5.88 30.77 0.18 -1.47 16 23 C -0.11 -1.32 5.85 30.74 0.18 -1.14 16 24 C -0.03 -0.46 6.31 30.03 0.19 -0.27 16 25 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.09 1.59 7.67 -2.39 -0.02 1.57 16 28 H 0.42 9.41 8.46 -92.71 -0.78 8.62 16 29 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -72.23 357.62 2.69 -69.54 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.21 Total: 14.17 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.73 Total: -12.52 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -4.21 Total: -94.27 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.07 Total: -22.14 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.23 2.69 -69.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610805656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.516 kcal (2) G-P(sol) polarization free energy of solvation -72.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds