Wall clock time and date at job start Tue Mar 31 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35682 * 117.00227 * 2 1 4 4 C 1.38919 * 119.68676 * 180.02562 * 3 2 1 5 5 C 1.38372 * 119.11181 * 179.97438 * 4 3 2 6 6 C 1.38836 * 118.48664 * 0.02562 * 5 4 3 7 7 C 1.38043 * 119.28740 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.58121 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47167 * 95.00002 * 8 7 6 10 10 C 1.46965 * 110.99928 * 189.99820 * 9 8 7 11 11 C 1.53051 * 109.36478 * 176.80885 * 10 9 8 12 12 N 1.46953 * 109.36263 * 58.40072 * 11 10 9 13 13 C 1.46900 * 111.00084 * 176.81102 * 12 11 10 14 14 C 1.50698 * 109.47171 * 64.48759 * 13 12 11 15 15 H 1.08004 * 119.99614 * 4.82620 * 14 13 12 16 16 C 1.37880 * 120.00350 * 184.81626 * 14 13 12 17 17 N 1.31519 * 119.99446 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00268 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47044 * 89.99948 * 18 16 14 20 20 H 1.48497 * 109.47504 * 210.00580 * 18 16 14 21 21 H 1.48503 * 109.47139 * 330.00519 * 18 16 14 22 22 C 1.46957 * 110.88284 * 300.68153 * 12 11 10 23 23 C 1.46953 * 111.00102 * 66.20121 * 9 8 7 24 24 N 1.31962 * 120.83617 * 0.27312 * 7 6 5 25 25 H 1.08998 * 109.47476 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46846 * 299.99799 * 1 2 3 27 27 H 1.08996 * 109.47245 * 59.99384 * 1 2 3 28 28 H 1.08003 * 120.44457 * 0.02562 * 4 3 2 29 29 H 1.07999 * 120.76058 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.35196 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47170 * 334.99515 * 8 7 6 32 32 H 1.09006 * 109.47139 * 214.99443 * 8 7 6 33 33 H 1.09000 * 109.48364 * 56.84383 * 10 9 8 34 34 H 1.09000 * 109.48758 * 296.77807 * 10 9 8 35 35 H 1.08998 * 109.48855 * 178.36930 * 11 10 9 36 36 H 1.08998 * 109.48710 * 298.43772 * 11 10 9 37 37 H 1.08993 * 109.47259 * 184.49509 * 13 12 11 38 38 H 1.09011 * 109.46884 * 304.49398 * 13 12 11 39 39 H 0.97001 * 119.99405 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48521 * 299.35194 * 22 12 11 41 41 H 1.09000 * 109.48942 * 179.28974 * 22 12 11 42 42 H 1.08998 * 109.48781 * 303.15376 * 23 9 8 43 43 H 1.08998 * 109.49073 * 63.22395 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2504 3.6492 -0.0005 7 6 1.8771 3.5097 0.0000 8 6 1.0045 4.7384 0.0001 9 7 0.6221 5.0674 -1.3796 10 6 -0.0270 6.3843 -1.4464 11 6 -0.3372 6.7237 -2.9062 12 7 -1.2047 5.6828 -3.4747 13 6 -1.5871 6.0118 -4.8544 14 6 -0.3593 6.0181 -5.7281 15 1 0.5960 5.7238 -5.3191 16 6 -0.4555 6.3993 -7.0496 17 7 -1.6188 6.7579 -7.5475 18 14 1.0663 6.4064 -8.1328 19 1 1.2163 5.0804 -8.7845 20 1 0.9284 7.4567 -9.1735 21 1 2.2643 6.6877 -7.3015 22 6 -0.5557 4.3659 -3.4079 23 6 -0.2455 4.0265 -1.9481 24 7 1.3186 2.3141 0.0054 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 4.0229 0.3695 -0.0014 29 1 5.1254 2.5947 -0.0011 30 1 3.6994 4.6314 -0.0005 31 1 1.5537 5.5740 0.4341 32 1 0.1079 4.5473 0.5898 33 1 0.6400 7.1398 -1.0311 34 1 -0.9539 6.3623 -0.8732 35 1 -0.8447 7.6871 -2.9556 36 1 0.5922 6.7724 -3.4735 37 1 -2.2920 5.2669 -5.2235 38 1 -2.0541 6.9966 -4.8769 39 1 -1.6863 7.0265 -8.4772 40 1 0.3712 4.3879 -3.9810 41 1 -1.2226 3.6104 -3.8232 42 1 0.2620 3.0631 -1.8987 43 1 -1.1749 3.9778 -1.3807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:57 Heat of formation + Delta-G solvation = 16.619044 kcal Electronic energy + Delta-G solvation = -23579.795245 eV Core-core repulsion = 20239.652691 eV Total energy + Delta-G solvation = -3340.142554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77630 -38.77684 -37.87800 -35.21106 -32.77980 -32.27708 -31.16353 -30.25161 -28.53849 -27.25352 -25.86417 -24.15063 -23.22185 -22.73566 -21.98722 -21.26359 -19.05430 -18.19303 -16.87663 -16.41800 -16.17054 -16.07726 -15.56431 -14.86906 -14.65040 -14.62641 -14.15626 -14.11508 -13.71767 -13.51438 -13.25124 -12.87674 -12.73991 -12.25957 -11.91768 -11.84161 -11.74687 -11.73751 -11.21903 -11.03678 -10.82641 -10.64372 -10.49588 -10.32957 -10.08762 -9.91095 -9.81905 -9.66590 -9.46096 -8.53477 -8.40464 -8.06608 -7.13127 -5.99874 -4.08574 1.03097 1.22099 2.99622 3.29548 3.36184 3.40075 3.58129 4.04208 4.40300 4.43566 4.62360 4.92787 5.01487 5.09672 5.12718 5.20763 5.24428 5.30527 5.35268 5.38309 5.51003 5.57486 5.66917 5.70627 5.89973 5.92132 5.98343 6.05990 6.11713 6.21160 6.32004 6.38588 6.65689 6.81803 6.89736 7.13633 7.23737 7.29233 7.41665 7.55523 7.81783 7.93163 8.09408 8.30862 8.34610 9.02292 9.58227 11.05180 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.003882 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.960522 B = 7211.534369 C = 7392.496091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.320 3.680 4 C -0.196 4.196 5 C -0.042 4.042 6 C -0.191 4.191 7 C 0.183 3.817 8 C 0.102 3.898 9 N -0.531 5.531 10 C 0.060 3.940 11 C 0.065 3.935 12 N -0.543 5.543 13 C 0.187 3.813 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.064 3.936 23 C 0.062 3.938 24 N -0.532 5.532 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -8.333 18.113 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.140 3.860 4 C -0.217 4.217 5 C -0.068 4.068 6 C -0.212 4.212 7 C 0.046 3.954 8 C -0.027 4.027 9 N -0.256 5.256 10 C -0.067 4.067 11 C -0.064 4.064 12 N -0.268 5.268 13 C 0.061 3.939 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.065 4.065 23 C -0.066 4.066 24 N -0.257 5.257 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.014 -8.604 17.952 21.106 hybrid contribution 1.483 0.129 -0.866 1.722 sum 8.497 -8.475 17.086 20.879 Atomic orbital electron populations 1.22852 0.77132 1.02804 1.02692 1.86218 1.23007 1.24635 1.87936 1.19801 0.89348 0.84605 0.92197 1.21016 0.92045 0.99550 1.09102 1.21385 1.00481 0.91252 0.93657 1.21779 0.93981 0.99975 1.05415 1.20743 0.91909 0.91148 0.91568 1.20977 0.97436 0.92916 0.91341 1.62152 1.43729 1.03333 1.16407 1.22246 0.96487 0.89494 0.98502 1.21907 0.96994 0.95389 0.92084 1.62690 1.39529 1.01053 1.23517 1.19730 0.95490 0.97056 0.81612 1.21779 0.95609 1.45399 0.95809 0.92319 1.24960 0.95791 0.95002 0.98034 1.69951 1.23539 1.45072 1.14565 0.86652 0.83590 0.77736 0.80401 1.20682 1.21180 1.19917 1.21938 0.98468 0.92572 0.93473 1.22263 0.94153 0.94170 0.95986 1.67124 1.40992 0.98419 1.19146 0.88776 0.92415 0.91989 0.84406 0.84220 0.84468 0.89209 0.93171 0.91151 0.94597 0.91291 0.93377 0.95486 0.94841 0.92876 0.93531 0.91582 0.90846 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -3.87 10.48 -18.75 -0.20 -4.07 16 3 C 0.32 4.19 7.49 -17.12 -0.13 4.06 16 4 C -0.20 -2.16 10.04 -39.28 -0.39 -2.56 16 5 C -0.04 -0.42 10.17 -39.31 -0.40 -0.82 16 6 C -0.19 -2.13 9.71 -39.43 -0.38 -2.51 16 7 C 0.18 2.39 5.69 -82.61 -0.47 1.92 16 8 C 0.10 1.30 5.27 -4.98 -0.03 1.27 16 9 N -0.53 -8.39 4.70 -235.90 -1.11 -9.50 16 10 C 0.06 0.95 5.61 -3.76 -0.02 0.93 16 11 C 0.07 1.29 5.32 -3.77 -0.02 1.27 16 12 N -0.54 -11.97 4.92 -235.91 -1.16 -13.13 16 13 C 0.19 4.89 5.14 -4.98 -0.03 4.86 16 14 C -0.55 -15.23 7.67 -34.44 -0.26 -15.50 16 15 H 0.06 1.65 5.81 -52.48 -0.31 1.34 16 16 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.06 1.33 5.24 -3.77 -0.02 1.31 16 23 C 0.06 1.08 5.35 -3.77 -0.02 1.05 16 24 N -0.53 -7.38 7.64 -9.55 -0.07 -7.45 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 29 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.09 0.94 7.92 -51.93 -0.41 0.52 16 32 H 0.05 0.65 8.12 -51.93 -0.42 0.22 16 33 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 36 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.93 8.12 -51.92 -0.42 0.51 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.05 1.07 6.45 -51.93 -0.34 0.74 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.27 6.18 -51.93 -0.32 0.95 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -31.16 345.60 -9.61 -40.78 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.78 Total: -1.30 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.22 Total: -1.52 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.61 Total: -55.83 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.20 Total: -4.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.16 -9.61 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.396 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds