Wall clock time and date at job start Tue Mar 31 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35682 * 117.00227 * 2 1 4 4 C 1.38919 * 119.68676 * 180.02562 * 3 2 1 5 5 C 1.38372 * 119.11181 * 179.97438 * 4 3 2 6 6 C 1.38836 * 118.48664 * 0.02562 * 5 4 3 7 7 C 1.38043 * 119.28740 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.58121 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47167 * 95.00002 * 8 7 6 10 10 C 1.46965 * 110.99928 * 189.99820 * 9 8 7 11 11 C 1.53051 * 109.36478 * 176.80885 * 10 9 8 12 12 N 1.46953 * 109.36263 * 58.40072 * 11 10 9 13 13 C 1.46900 * 111.00084 * 176.81102 * 12 11 10 14 14 C 1.50698 * 109.47171 * 64.48759 * 13 12 11 15 15 H 1.08004 * 119.99614 * 4.82620 * 14 13 12 16 16 C 1.37880 * 120.00350 * 184.81626 * 14 13 12 17 17 N 1.31519 * 119.99446 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00268 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47044 * 89.99948 * 18 16 14 20 20 H 1.48497 * 109.47504 * 210.00580 * 18 16 14 21 21 H 1.48503 * 109.47139 * 330.00519 * 18 16 14 22 22 C 1.46957 * 110.88284 * 300.68153 * 12 11 10 23 23 C 1.46953 * 111.00102 * 66.20121 * 9 8 7 24 24 N 1.31962 * 120.83617 * 0.27312 * 7 6 5 25 25 H 1.08998 * 109.47476 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46846 * 299.99799 * 1 2 3 27 27 H 1.08996 * 109.47245 * 59.99384 * 1 2 3 28 28 H 1.08003 * 120.44457 * 0.02562 * 4 3 2 29 29 H 1.07999 * 120.76058 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.35196 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.47170 * 334.99515 * 8 7 6 32 32 H 1.09006 * 109.47139 * 214.99443 * 8 7 6 33 33 H 1.09000 * 109.48364 * 56.84383 * 10 9 8 34 34 H 1.09000 * 109.48758 * 296.77807 * 10 9 8 35 35 H 1.08998 * 109.48855 * 178.36930 * 11 10 9 36 36 H 1.08998 * 109.48710 * 298.43772 * 11 10 9 37 37 H 1.08993 * 109.47259 * 184.49509 * 13 12 11 38 38 H 1.09011 * 109.46884 * 304.49398 * 13 12 11 39 39 H 0.97001 * 119.99405 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48521 * 299.35194 * 22 12 11 41 41 H 1.09000 * 109.48942 * 179.28974 * 22 12 11 42 42 H 1.08998 * 109.48781 * 303.15376 * 23 9 8 43 43 H 1.08998 * 109.49073 * 63.22395 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2504 3.6492 -0.0005 7 6 1.8771 3.5097 0.0000 8 6 1.0045 4.7384 0.0001 9 7 0.6221 5.0674 -1.3796 10 6 -0.0270 6.3843 -1.4464 11 6 -0.3372 6.7237 -2.9062 12 7 -1.2047 5.6828 -3.4747 13 6 -1.5871 6.0118 -4.8544 14 6 -0.3593 6.0181 -5.7281 15 1 0.5960 5.7238 -5.3191 16 6 -0.4555 6.3993 -7.0496 17 7 -1.6188 6.7579 -7.5475 18 14 1.0663 6.4064 -8.1328 19 1 1.2163 5.0804 -8.7845 20 1 0.9284 7.4567 -9.1735 21 1 2.2643 6.6877 -7.3015 22 6 -0.5557 4.3659 -3.4079 23 6 -0.2455 4.0265 -1.9481 24 7 1.3186 2.3141 0.0054 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 4.0229 0.3695 -0.0014 29 1 5.1254 2.5947 -0.0011 30 1 3.6994 4.6314 -0.0005 31 1 1.5537 5.5740 0.4341 32 1 0.1079 4.5473 0.5898 33 1 0.6400 7.1398 -1.0311 34 1 -0.9539 6.3623 -0.8732 35 1 -0.8447 7.6871 -2.9556 36 1 0.5922 6.7724 -3.4735 37 1 -2.2920 5.2669 -5.2235 38 1 -2.0541 6.9966 -4.8769 39 1 -1.6863 7.0265 -8.4772 40 1 0.3712 4.3879 -3.9810 41 1 -1.2226 3.6104 -3.8232 42 1 0.2620 3.0631 -1.8987 43 1 -1.1749 3.9778 -1.3807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:56 Heat of formation + Delta-G solvation = -6.745300 kcal Electronic energy + Delta-G solvation = -23580.808399 eV Core-core repulsion = 20239.652691 eV Total energy + Delta-G solvation = -3341.155708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.66428 -40.14973 -38.88654 -36.75508 -34.56210 -33.43895 -32.22819 -31.75975 -29.94782 -28.41657 -27.34198 -25.66279 -24.53254 -23.79227 -23.49209 -22.55979 -20.68528 -19.08855 -18.47163 -17.77996 -17.33973 -16.89801 -16.85789 -16.41880 -16.12537 -15.80317 -15.68018 -15.43134 -15.02766 -14.90206 -14.50275 -14.16897 -13.80018 -13.61796 -13.48216 -13.21747 -13.01339 -12.88952 -12.65718 -12.60960 -12.27804 -12.24206 -12.14990 -12.04404 -11.79092 -11.71074 -11.39079 -10.79845 -10.61877 -10.55732 -9.44460 -9.29891 -9.02929 -8.16622 -6.36016 0.16173 0.38787 1.35720 1.35907 1.47182 2.17936 2.36541 2.62690 3.08097 3.11935 3.29210 3.36914 3.78480 4.04483 4.14010 4.22631 4.25120 4.30060 4.38778 4.40976 4.44067 4.46725 4.53079 4.61044 4.67682 4.71451 4.76349 4.81335 4.91110 5.06202 5.09137 5.12167 5.22617 5.25082 5.29944 5.31743 5.54969 5.71931 5.99190 6.03087 6.08800 6.26308 6.28467 6.50319 6.84308 6.92531 7.35339 8.86053 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.003882 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.960522 B = 7211.534369 C = 7392.496091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.322 6.322 3 C 0.294 3.706 4 C -0.199 4.199 5 C -0.038 4.038 6 C -0.191 4.191 7 C 0.157 3.843 8 C 0.107 3.893 9 N -0.541 5.541 10 C 0.071 3.929 11 C 0.065 3.935 12 N -0.542 5.542 13 C 0.200 3.800 14 C -0.554 4.554 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.268 1.268 22 C 0.069 3.931 23 C 0.082 3.918 24 N -0.553 5.553 25 H 0.121 0.879 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.157 0.843 29 H 0.176 0.824 30 H 0.159 0.841 31 H 0.120 0.880 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.000 1.000 38 H 0.010 0.990 39 H 0.265 0.735 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.349 -8.314 19.450 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.229 6.229 3 C 0.115 3.885 4 C -0.219 4.219 5 C -0.063 4.063 6 C -0.212 4.212 7 C 0.021 3.979 8 C -0.021 4.021 9 N -0.266 5.266 10 C -0.056 4.056 11 C -0.064 4.064 12 N -0.266 5.266 13 C 0.073 3.927 14 C -0.593 4.593 15 H 0.072 0.928 16 C -0.187 4.187 17 N -0.566 5.566 18 Si 0.782 3.218 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.060 4.060 23 C -0.047 4.047 24 N -0.278 5.278 25 H 0.139 0.861 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.175 0.825 29 H 0.193 0.807 30 H 0.176 0.824 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.018 0.982 38 H 0.028 0.972 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.425 -8.586 19.316 23.145 hybrid contribution 0.733 0.097 -1.242 1.446 sum 10.158 -8.489 18.074 22.403 Atomic orbital electron populations 1.22947 0.76373 1.04309 1.01789 1.86202 1.23858 1.24728 1.88123 1.20180 0.90368 0.84593 0.93385 1.21381 0.91431 1.01016 1.08106 1.21825 1.02187 0.90263 0.92008 1.22092 0.93346 1.01482 1.04231 1.20918 0.92955 0.90898 0.93113 1.21046 0.97776 0.94112 0.89125 1.62100 1.42966 1.02714 1.18847 1.22160 0.97775 0.90426 0.95264 1.21968 0.95132 0.94756 0.94528 1.62629 1.40779 1.02406 1.20825 1.19397 0.94519 0.94812 0.83969 1.21941 0.95731 1.45273 0.96387 0.92810 1.25801 0.98890 0.94516 0.99445 1.70067 1.25631 1.45780 1.15127 0.85572 0.79740 0.78005 0.78488 1.20087 1.20320 1.19294 1.21895 0.96664 0.91589 0.95816 1.21961 0.94535 0.94802 0.93388 1.67043 1.41930 0.99020 1.19794 0.86107 0.92589 0.93550 0.82548 0.80694 0.82382 0.86230 0.93348 0.87707 0.93944 0.91365 0.95846 0.98181 0.97163 0.92562 0.96156 0.92576 0.90777 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 1.99 16 2 O -0.32 -7.85 10.48 -90.00 -0.94 -8.80 16 3 C 0.29 7.44 7.49 84.79 0.63 8.07 16 4 C -0.20 -3.96 10.04 22.46 0.23 -3.74 16 5 C -0.04 -0.62 10.17 22.44 0.23 -0.40 16 6 C -0.19 -3.69 9.71 22.37 0.22 -3.47 16 7 C 0.16 3.80 5.69 42.49 0.24 4.05 16 8 C 0.11 2.46 5.27 85.56 0.45 2.91 16 9 N -0.54 -16.18 4.70 -900.27 -4.23 -20.41 16 10 C 0.07 2.09 5.61 86.31 0.48 2.58 16 11 C 0.06 2.55 5.32 86.31 0.46 3.01 16 12 N -0.54 -24.50 4.92 -900.30 -4.43 -28.92 16 13 C 0.20 10.91 5.14 85.56 0.44 11.35 16 14 C -0.55 -31.67 7.67 25.60 0.20 -31.48 16 15 H 0.05 3.08 5.81 -2.91 -0.02 3.07 16 16 C 0.01 0.74 5.46 84.65 0.46 1.20 16 17 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 18 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 C 0.07 2.93 5.24 86.31 0.45 3.39 16 23 C 0.08 2.80 5.35 86.31 0.46 3.26 16 24 N -0.55 -14.87 7.64 -296.98 -2.27 -17.14 16 25 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.11 8.10 -2.39 -0.02 1.10 16 27 H 0.05 1.06 8.11 -2.39 -0.02 1.04 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 29 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.12 2.02 7.92 -2.39 -0.02 2.00 16 32 H 0.05 1.14 8.12 -2.38 -0.02 1.12 16 33 H 0.10 2.41 8.07 -2.39 -0.02 2.39 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 2.65 8.13 -2.39 -0.02 2.64 16 36 H 0.02 1.03 6.95 -2.39 -0.02 1.02 16 37 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.01 0.60 8.12 -2.38 -0.02 0.58 16 39 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.02 0.96 6.45 -2.39 -0.02 0.94 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 42 H 0.07 2.56 6.18 -2.39 -0.01 2.55 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.91 345.60 -2.44 -71.35 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.98 Total: 10.02 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.13 Total: 2.73 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -10.64 Total: -122.19 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.94 Total: -8.80 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.91 -2.44 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.609 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds