Wall clock time and date at job start Tue Mar 31 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35737 * 117.00025 * 2 1 4 4 C 1.39288 * 120.84939 * 0.02562 * 3 2 1 5 5 C 1.37945 * 119.09900 * 179.97438 * 4 3 2 6 6 N 1.31983 * 120.81913 * 359.74287 * 5 4 3 7 7 C 1.31938 * 121.86311 * 0.52404 * 6 5 4 8 8 C 1.50703 * 119.58999 * 179.75000 * 7 6 5 9 9 N 1.46899 * 109.47030 * 274.73113 * 8 7 6 10 10 C 1.46961 * 110.99628 * 169.99921 * 9 8 7 11 11 C 1.53059 * 109.36497 * 176.81099 * 10 9 8 12 12 N 1.46958 * 109.36189 * 58.39658 * 11 10 9 13 13 C 1.46899 * 111.00000 * 176.81494 * 12 11 10 14 14 C 1.50698 * 109.47250 * 64.50044 * 13 12 11 15 15 H 1.08004 * 119.99614 * 4.87245 * 14 13 12 16 16 C 1.37880 * 120.00350 * 184.86250 * 14 13 12 17 17 N 1.31515 * 120.00129 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99573 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47529 * 89.99816 * 18 16 14 20 20 H 1.48507 * 109.47127 * 209.99745 * 18 16 14 21 21 H 1.48497 * 109.47267 * 329.99133 * 18 16 14 22 22 C 1.46961 * 110.88523 * 300.68143 * 12 11 10 23 23 C 1.46952 * 111.00518 * 46.20009 * 9 8 7 24 24 C 1.37999 * 120.82342 * 359.47989 * 7 6 5 25 25 H 1.08998 * 109.47083 * 59.99631 * 1 2 3 26 26 H 1.08998 * 109.46818 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47159 * 299.99642 * 1 2 3 28 28 H 1.08007 * 120.44917 * 359.95444 * 4 3 2 29 29 H 1.07994 * 119.59017 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47284 * 154.72836 * 8 7 6 31 31 H 1.08998 * 109.47121 * 34.72812 * 8 7 6 32 32 H 1.09000 * 109.49419 * 56.84234 * 10 9 8 33 33 H 1.09004 * 109.48681 * 296.77426 * 10 9 8 34 34 H 1.08991 * 109.49044 * 178.36912 * 11 10 9 35 35 H 1.09002 * 109.48706 * 298.43917 * 11 10 9 36 36 H 1.08999 * 109.47462 * 184.50934 * 13 12 11 37 37 H 1.09002 * 109.46600 * 304.50800 * 13 12 11 38 38 H 0.97001 * 119.99631 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.48681 * 299.35712 * 22 12 11 40 40 H 1.08991 * 109.48857 * 179.28772 * 22 12 11 41 41 H 1.09003 * 109.48377 * 303.15658 * 23 9 8 42 42 H 1.08998 * 109.48995 * 63.21714 * 23 9 8 43 43 H 1.07997 * 120.45181 * 180.22936 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2865 3.6457 0.0061 7 6 4.0230 2.5511 0.0007 8 6 5.5257 2.6652 0.0012 9 7 6.0052 2.8231 -1.3783 10 6 7.4322 3.1735 -1.4029 11 6 7.9110 3.2506 -2.8547 12 7 7.1134 4.2505 -3.5783 13 6 7.5929 4.4084 -4.9578 14 6 7.3841 3.1209 -5.7127 15 1 6.8688 2.2966 -5.2421 16 6 7.8507 2.9954 -7.0040 17 7 7.6680 1.8719 -7.6630 18 14 8.7424 4.4210 -7.8176 19 1 10.1983 4.3144 -7.5454 20 1 8.5085 4.3793 -9.2835 21 1 8.2290 5.7027 -7.2709 22 6 5.6864 3.9001 -3.5537 23 6 5.2078 3.8230 -2.1020 24 6 3.4345 1.3029 0.0000 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 0.2244 2.3566 0.0002 29 1 1.4007 4.5173 0.0019 30 1 5.9584 1.7639 0.4354 31 1 5.8240 3.5319 0.5909 32 1 8.0030 2.4119 -0.8717 33 1 7.5777 4.1400 -0.9203 34 1 8.9619 3.5387 -2.8762 35 1 7.7907 2.2768 -3.3294 36 1 7.0384 5.2098 -5.4458 37 1 8.6546 4.6552 -4.9473 38 1 7.9966 1.7835 -8.5713 39 1 5.5410 2.9336 -4.0364 40 1 5.1157 4.6617 -4.0849 41 1 4.1568 3.5348 -2.0804 42 1 5.3280 4.7968 -1.6273 43 1 4.0432 0.4108 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612110128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:18 Heat of formation + Delta-G solvation = 22.551591 kcal Electronic energy + Delta-G solvation = -23364.913338 eV Core-core repulsion = 20025.028039 eV Total energy + Delta-G solvation = -3339.885299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87052 -39.01527 -38.10979 -35.27774 -32.53379 -31.78190 -31.53055 -30.20800 -28.81087 -27.77862 -26.12071 -23.95216 -23.63785 -22.87595 -21.61298 -20.98146 -18.97992 -18.13478 -17.17520 -16.72104 -16.20920 -15.88223 -15.77841 -15.16668 -14.66624 -14.39179 -14.27743 -14.15016 -13.92243 -13.77491 -13.42908 -13.16166 -12.58870 -12.29399 -12.27141 -11.97676 -11.86177 -11.70930 -11.44437 -11.12206 -10.84417 -10.59316 -10.44885 -10.17524 -10.05477 -9.86256 -9.58191 -9.41961 -9.22316 -9.00382 -8.54883 -7.99420 -7.12731 -6.05672 -4.05102 0.94650 1.22761 2.85535 3.30490 3.38089 3.42676 3.58621 4.14272 4.40683 4.43584 4.45229 4.68880 4.77205 4.80415 4.98760 5.03636 5.06713 5.13254 5.27613 5.34646 5.51745 5.58013 5.65489 5.72725 5.82594 5.91139 5.94489 5.99577 6.12655 6.20582 6.35031 6.39899 6.63884 6.84691 6.93182 6.96594 6.97387 7.12682 7.32445 7.40560 7.61565 7.94036 8.11875 8.16398 8.50509 8.98919 9.57283 11.07278 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.003539 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.375499 B = 7910.479647 C = 8459.325360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.166 3.834 4 C -0.267 4.267 5 C 0.137 3.863 6 N -0.500 5.500 7 C 0.172 3.828 8 C 0.103 3.897 9 N -0.530 5.530 10 C 0.061 3.939 11 C 0.062 3.938 12 N -0.537 5.537 13 C 0.155 3.845 14 C -0.549 4.549 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C 0.063 3.937 23 C 0.065 3.935 24 C -0.184 4.184 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.137 0.863 29 H 0.157 0.843 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 -0.176 18.543 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.113 3.887 4 C -0.288 4.288 5 C -0.021 4.021 6 N -0.213 5.213 7 C 0.036 3.964 8 C -0.025 4.025 9 N -0.255 5.255 10 C -0.067 4.067 11 C -0.066 4.066 12 N -0.261 5.261 13 C 0.028 3.972 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.066 4.066 23 C -0.063 4.063 24 C -0.206 4.206 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.174 0.826 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.016 0.317 18.376 21.958 hybrid contribution -0.372 -0.152 -0.714 0.820 sum -12.388 0.165 17.662 21.574 Atomic orbital electron populations 1.23125 0.77879 1.04303 1.01597 1.86079 1.21813 1.26427 1.87860 1.19325 0.92432 0.84517 0.92441 1.22178 1.01372 0.93365 1.11889 1.22514 0.90063 0.96925 0.92556 1.67635 1.06894 1.31938 1.14851 1.20923 0.96298 0.87413 0.91804 1.21029 0.87767 1.02113 0.91593 1.62343 1.03682 1.47898 1.11594 1.22236 0.87406 0.98766 0.98300 1.21949 0.96837 0.96363 0.91487 1.62620 1.02248 1.44345 1.16861 1.20144 0.95358 0.96865 0.84850 1.21731 1.38123 0.99945 0.98990 0.90486 1.24977 0.95470 0.95487 0.97162 1.69938 1.46626 1.25443 1.11776 0.86803 0.80421 0.83631 0.78572 1.20240 1.21380 1.18898 1.21980 0.89997 1.00785 0.93858 1.22224 0.96500 0.92973 0.94557 1.21290 0.91812 0.99924 1.07542 0.92265 0.87915 0.92477 0.84570 0.82558 0.89219 0.92821 0.90990 0.94524 0.91326 0.92737 0.95508 0.95777 0.92765 0.92922 0.91568 0.91381 0.94206 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.16 16 2 O -0.31 -3.38 10.51 -18.92 -0.20 -3.58 16 3 C 0.17 1.96 6.74 -38.82 -0.26 1.70 16 4 C -0.27 -2.70 9.11 -39.30 -0.36 -3.06 16 5 C 0.14 1.51 11.17 -17.59 -0.20 1.31 16 6 N -0.50 -6.79 8.73 -9.55 -0.08 -6.87 16 7 C 0.17 2.32 4.91 -82.63 -0.41 1.92 16 8 C 0.10 1.37 5.60 -4.98 -0.03 1.35 16 9 N -0.53 -8.68 4.85 -235.90 -1.14 -9.83 16 10 C 0.06 0.98 5.58 -3.76 -0.02 0.96 16 11 C 0.06 1.24 5.32 -3.76 -0.02 1.22 16 12 N -0.54 -11.69 4.92 -235.91 -1.16 -12.85 16 13 C 0.15 3.82 4.21 -4.98 -0.02 3.80 16 14 C -0.55 -15.59 8.23 -34.44 -0.28 -15.88 16 15 H 0.08 2.40 6.06 -52.48 -0.32 2.08 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 18 Si 0.88 21.73 27.37 -169.99 -4.65 17.08 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.26 -6.32 6.68 56.52 0.38 -5.94 16 22 C 0.06 1.31 5.24 -3.77 -0.02 1.29 16 23 C 0.07 1.16 4.79 -3.77 -0.02 1.14 16 24 C -0.18 -2.36 9.68 -39.30 -0.38 -2.74 16 25 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 28 H 0.14 0.98 6.47 -52.48 -0.34 0.64 16 29 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.09 1.01 8.04 -51.93 -0.42 0.60 16 31 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 35 H 0.05 1.24 6.95 -51.93 -0.36 0.88 16 36 H 0.03 0.67 7.54 -51.93 -0.39 0.28 16 37 H 0.02 0.59 7.28 -51.93 -0.38 0.22 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.05 1.26 6.45 -51.93 -0.34 0.92 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.07 1.20 5.97 -51.93 -0.31 0.89 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -32.75 338.64 -9.09 -41.84 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.61 Total: -0.03 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.12 Total: -3.86 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -1.61 Total: -56.56 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.20 Total: -3.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.65 Total: 17.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.75 -9.09 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612110128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.394 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds