Wall clock time and date at job start Tue Mar 31 2020 07:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35737 * 117.00025 * 2 1 4 4 C 1.39288 * 120.84939 * 0.02562 * 3 2 1 5 5 C 1.37945 * 119.09900 * 179.97438 * 4 3 2 6 6 N 1.31983 * 120.81913 * 359.74287 * 5 4 3 7 7 C 1.31938 * 121.86311 * 0.52404 * 6 5 4 8 8 C 1.50703 * 119.58999 * 179.75000 * 7 6 5 9 9 N 1.46899 * 109.47030 * 274.73113 * 8 7 6 10 10 C 1.46961 * 110.99628 * 169.99921 * 9 8 7 11 11 C 1.53059 * 109.36497 * 176.81099 * 10 9 8 12 12 N 1.46958 * 109.36189 * 58.39658 * 11 10 9 13 13 C 1.46899 * 111.00000 * 176.81494 * 12 11 10 14 14 C 1.50698 * 109.47250 * 64.50044 * 13 12 11 15 15 H 1.08004 * 119.99614 * 4.87245 * 14 13 12 16 16 C 1.37880 * 120.00350 * 184.86250 * 14 13 12 17 17 N 1.31515 * 120.00129 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99573 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47529 * 89.99816 * 18 16 14 20 20 H 1.48507 * 109.47127 * 209.99745 * 18 16 14 21 21 H 1.48497 * 109.47267 * 329.99133 * 18 16 14 22 22 C 1.46961 * 110.88523 * 300.68143 * 12 11 10 23 23 C 1.46952 * 111.00518 * 46.20009 * 9 8 7 24 24 C 1.37999 * 120.82342 * 359.47989 * 7 6 5 25 25 H 1.08998 * 109.47083 * 59.99631 * 1 2 3 26 26 H 1.08998 * 109.46818 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47159 * 299.99642 * 1 2 3 28 28 H 1.08007 * 120.44917 * 359.95444 * 4 3 2 29 29 H 1.07994 * 119.59017 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47284 * 154.72836 * 8 7 6 31 31 H 1.08998 * 109.47121 * 34.72812 * 8 7 6 32 32 H 1.09000 * 109.49419 * 56.84234 * 10 9 8 33 33 H 1.09004 * 109.48681 * 296.77426 * 10 9 8 34 34 H 1.08991 * 109.49044 * 178.36912 * 11 10 9 35 35 H 1.09002 * 109.48706 * 298.43917 * 11 10 9 36 36 H 1.08999 * 109.47462 * 184.50934 * 13 12 11 37 37 H 1.09002 * 109.46600 * 304.50800 * 13 12 11 38 38 H 0.97001 * 119.99631 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.48681 * 299.35712 * 22 12 11 40 40 H 1.08991 * 109.48857 * 179.28772 * 22 12 11 41 41 H 1.09003 * 109.48377 * 303.15658 * 23 9 8 42 42 H 1.08998 * 109.48995 * 63.21714 * 23 9 8 43 43 H 1.07997 * 120.45181 * 180.22936 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2865 3.6457 0.0061 7 6 4.0230 2.5511 0.0007 8 6 5.5257 2.6652 0.0012 9 7 6.0052 2.8231 -1.3783 10 6 7.4322 3.1735 -1.4029 11 6 7.9110 3.2506 -2.8547 12 7 7.1134 4.2505 -3.5783 13 6 7.5929 4.4084 -4.9578 14 6 7.3841 3.1209 -5.7127 15 1 6.8688 2.2966 -5.2421 16 6 7.8507 2.9954 -7.0040 17 7 7.6680 1.8719 -7.6630 18 14 8.7424 4.4210 -7.8176 19 1 10.1983 4.3144 -7.5454 20 1 8.5085 4.3793 -9.2835 21 1 8.2290 5.7027 -7.2709 22 6 5.6864 3.9001 -3.5537 23 6 5.2078 3.8230 -2.1020 24 6 3.4345 1.3029 0.0000 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 0.2244 2.3566 0.0002 29 1 1.4007 4.5173 0.0019 30 1 5.9584 1.7639 0.4354 31 1 5.8240 3.5319 0.5909 32 1 8.0030 2.4119 -0.8717 33 1 7.5777 4.1400 -0.9203 34 1 8.9619 3.5387 -2.8762 35 1 7.7907 2.2768 -3.3294 36 1 7.0384 5.2098 -5.4458 37 1 8.6546 4.6552 -4.9473 38 1 7.9966 1.7835 -8.5713 39 1 5.5410 2.9336 -4.0364 40 1 5.1157 4.6617 -4.0849 41 1 4.1568 3.5348 -2.0804 42 1 5.3280 4.7968 -1.6273 43 1 4.0432 0.4108 -0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612110128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:17 Heat of formation + Delta-G solvation = -2.705028 kcal Electronic energy + Delta-G solvation = -23366.008547 eV Core-core repulsion = 20025.028039 eV Total energy + Delta-G solvation = -3340.980508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74722 -40.24731 -39.19655 -36.80392 -34.53504 -32.90896 -32.50691 -31.72175 -30.33139 -28.65591 -27.54208 -25.40329 -24.71211 -24.22789 -23.15300 -22.23720 -20.66370 -18.97714 -18.83831 -18.00628 -17.38108 -16.79788 -16.71251 -16.30640 -16.20985 -15.83904 -15.73556 -15.63681 -15.32951 -14.79920 -14.58172 -14.44532 -14.17006 -13.92031 -13.58154 -13.24843 -13.11031 -12.84238 -12.60599 -12.46730 -12.31843 -12.14678 -12.11497 -12.05296 -11.72827 -11.65471 -11.41948 -10.78476 -10.51475 -10.12518 -9.86007 -9.27731 -8.99840 -8.30831 -6.36415 0.06234 0.34543 1.35786 1.37318 1.49958 2.15576 2.34378 2.62878 3.03827 3.15983 3.29887 3.33183 3.68349 3.88392 4.02955 4.09638 4.17801 4.25891 4.31823 4.35307 4.39558 4.46057 4.50146 4.58153 4.68085 4.70332 4.72584 4.81905 4.88377 4.93188 4.96958 5.02802 5.07153 5.13921 5.15529 5.24118 5.50951 5.53744 5.98561 6.05232 6.17384 6.22303 6.34506 6.39780 6.70669 7.04394 7.30273 8.85680 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.003539 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.375499 B = 7910.479647 C = 8459.325360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.156 3.844 4 C -0.258 4.258 5 C 0.129 3.871 6 N -0.523 5.523 7 C 0.155 3.845 8 C 0.108 3.892 9 N -0.547 5.547 10 C 0.070 3.930 11 C 0.062 3.938 12 N -0.531 5.531 13 C 0.161 3.839 14 C -0.550 4.550 15 H 0.032 0.968 16 C 0.010 3.990 17 N -0.948 5.948 18 Si 0.952 3.048 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.247 1.247 22 C 0.067 3.933 23 C 0.086 3.914 24 C -0.202 4.202 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.168 0.832 29 H 0.186 0.814 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.015 0.985 36 H 0.027 0.973 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.011 0.989 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 1.481 19.972 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.103 3.897 4 C -0.279 4.279 5 C -0.028 4.028 6 N -0.237 5.237 7 C 0.020 3.980 8 C -0.020 4.020 9 N -0.273 5.273 10 C -0.057 4.057 11 C -0.067 4.067 12 N -0.254 5.254 13 C 0.034 3.966 14 C -0.588 4.588 15 H 0.050 0.950 16 C -0.188 4.188 17 N -0.589 5.589 18 Si 0.775 3.225 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.170 1.170 22 C -0.062 4.062 23 C -0.042 4.042 24 C -0.224 4.224 25 H 0.084 0.916 26 H 0.138 0.862 27 H 0.093 0.907 28 H 0.186 0.814 29 H 0.203 0.797 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.517 1.970 19.841 23.542 hybrid contribution -0.371 -0.800 -1.107 1.415 sum -12.888 1.170 18.734 22.769 Atomic orbital electron populations 1.23452 0.75645 1.05999 1.02749 1.86060 1.24180 1.26208 1.87686 1.19498 0.92409 0.85516 0.92309 1.22492 1.02902 0.92347 1.10119 1.23051 0.89535 0.98477 0.91711 1.67618 1.08213 1.32107 1.15771 1.20927 0.96372 0.87775 0.92966 1.21068 0.88115 1.03267 0.89508 1.62275 1.03731 1.47436 1.13840 1.22162 0.87556 1.00465 0.95550 1.22013 0.97445 0.93690 0.93511 1.62665 1.02788 1.44884 1.15098 1.20023 0.95896 0.94647 0.86071 1.21892 1.37231 1.00317 0.99403 0.95025 1.25959 0.96455 0.98568 0.97824 1.70095 1.48305 1.28066 1.12398 0.85634 0.79370 0.80137 0.77315 1.18927 1.21006 1.17041 1.21943 0.89761 0.98357 0.96144 1.21925 0.96516 0.93527 0.92253 1.21400 0.92817 0.99810 1.08333 0.91579 0.86152 0.90728 0.81447 0.79750 0.87307 0.92152 0.88250 0.93246 0.90309 0.96702 0.95449 0.94846 0.92524 0.97066 0.91692 0.91402 0.93887 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.84 113.37 1.12 1.28 16 2 O -0.33 -6.84 10.51 -90.61 -0.95 -7.79 16 3 C 0.16 3.54 6.74 22.76 0.15 3.70 16 4 C -0.26 -4.68 9.11 22.45 0.20 -4.47 16 5 C 0.13 2.59 11.17 84.60 0.95 3.54 16 6 N -0.52 -13.57 8.73 -184.13 -1.61 -15.17 16 7 C 0.16 4.10 4.91 42.49 0.21 4.31 16 8 C 0.11 2.74 5.60 85.56 0.48 3.22 16 9 N -0.55 -17.65 4.85 -900.25 -4.37 -22.02 16 10 C 0.07 2.17 5.58 86.31 0.48 2.65 16 11 C 0.06 2.48 5.32 86.31 0.46 2.94 16 12 N -0.53 -23.21 4.92 -900.27 -4.43 -27.63 16 13 C 0.16 7.96 4.21 85.56 0.36 8.32 16 14 C -0.55 -32.30 8.23 25.60 0.21 -32.09 16 15 H 0.03 2.11 6.06 -2.91 -0.02 2.09 16 16 C 0.01 0.58 5.47 84.66 0.46 1.04 16 17 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 18 Si 0.95 44.72 27.37 68.60 1.88 46.59 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.82 6.68 99.48 0.66 -10.16 16 22 C 0.07 2.87 5.24 86.31 0.45 3.32 16 23 C 0.09 3.03 4.79 86.31 0.41 3.44 16 24 C -0.20 -5.14 9.68 22.45 0.22 -4.93 16 25 H 0.07 0.63 7.71 -2.39 -0.02 0.61 16 26 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.55 7.71 -2.38 -0.02 0.53 16 28 H 0.17 1.85 6.47 -2.91 -0.02 1.83 16 29 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.11 2.30 8.04 -2.38 -0.02 2.28 16 31 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 32 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.08 2.94 8.12 -2.39 -0.02 2.92 16 35 H 0.01 0.70 6.95 -2.39 -0.02 0.68 16 36 H 0.03 1.35 7.54 -2.39 -0.02 1.33 16 37 H 0.03 1.60 7.28 -2.39 -0.02 1.58 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.01 0.56 6.45 -2.38 -0.02 0.55 16 40 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.07 2.40 5.97 -2.39 -0.01 2.39 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -73.48 338.64 -2.06 -75.54 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.95 Total: 14.35 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.16 Total: -3.74 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -10.10 Total: -124.96 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.95 Total: -7.79 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.59 kcal Total: -73.48 -2.06 -75.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612110128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.835 kcal (2) G-P(sol) polarization free energy of solvation -73.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds