Wall clock time and date at job start Tue Mar 31 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 117.00019 * 2 1 4 4 C 1.38918 * 119.67966 * 180.02562 * 3 2 1 5 5 C 1.38385 * 119.10823 * 180.02562 * 4 3 2 6 6 C 1.38828 * 118.48626 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.35636 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.46959 * 90.00501 * 7 6 5 9 9 C 1.46906 * 110.99810 * 180.02562 * 8 7 6 10 10 C 1.53037 * 109.45796 * 275.02265 * 9 8 7 11 11 C 1.53193 * 109.31459 * 178.60393 * 10 9 8 12 12 N 1.46920 * 108.76519 * 54.65310 * 11 10 9 13 13 C 1.36934 * 120.63204 * 126.40803 * 12 11 10 14 14 H 1.08001 * 119.99846 * 331.83098 * 13 12 11 15 15 C 1.38808 * 120.00156 * 151.82383 * 13 12 11 16 16 N 1.31623 * 120.00281 * 343.07332 * 15 13 12 17 17 Si 1.86798 * 120.00224 * 163.07590 * 15 13 12 18 18 H 1.48501 * 109.47291 * 89.99820 * 17 15 13 19 19 H 1.48497 * 109.47476 * 210.00335 * 17 15 13 20 20 H 1.48504 * 109.47234 * 330.00258 * 17 15 13 21 21 C 1.46930 * 118.73889 * 306.38830 * 12 11 10 22 22 C 1.53041 * 109.45872 * 154.96758 * 9 8 7 23 23 C 1.38054 * 119.28707 * 0.02562 * 6 5 4 24 24 N 1.31960 * 120.83568 * 0.02562 * 23 6 5 25 25 H 1.08999 * 109.47004 * 299.99631 * 1 2 3 26 26 H 1.09002 * 109.47436 * 59.99220 * 1 2 3 27 27 H 1.09004 * 109.47590 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.44918 * 0.27850 * 4 3 2 29 29 H 1.07992 * 120.75684 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47084 * 209.99952 * 7 6 5 31 31 H 1.08997 * 109.47319 * 329.99844 * 7 6 5 32 32 H 1.00908 * 110.99965 * 303.94630 * 8 7 6 33 33 H 1.08996 * 109.46128 * 34.99657 * 9 8 7 34 34 H 1.09005 * 109.49598 * 298.56849 * 10 9 8 35 35 H 1.09002 * 109.49860 * 58.65819 * 10 9 8 36 36 H 1.09006 * 109.59097 * 294.86688 * 11 10 9 37 37 H 1.08999 * 109.70099 * 174.50958 * 11 10 9 38 38 H 0.97005 * 120.00361 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.58596 * 293.82037 * 21 12 11 40 40 H 1.09001 * 109.70287 * 173.47230 * 21 12 11 41 41 H 1.08997 * 109.50054 * 301.33269 * 22 9 8 42 42 H 1.09003 * 109.49465 * 61.40056 * 22 9 8 43 43 H 1.08006 * 119.57935 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6491 0.0005 7 6 3.8769 5.0197 0.0006 8 7 4.0798 5.4654 -1.3844 9 6 4.6907 6.8008 -1.4236 10 6 3.5970 7.8652 -1.3099 11 6 4.2405 9.2555 -1.3160 12 7 5.0825 9.3813 -2.5133 13 6 4.9161 10.4315 -3.3761 14 1 3.9488 10.9019 -3.4740 15 6 5.9905 10.8917 -4.1249 16 7 7.2189 10.5648 -3.7832 17 14 5.6932 11.9748 -5.6175 18 1 5.6919 13.4006 -5.2021 19 1 6.7708 11.7507 -6.6143 20 1 4.3805 11.6344 -6.2226 21 6 6.1069 8.3591 -2.7672 22 6 5.4426 6.9789 -2.7446 23 6 1.8771 3.5096 0.0010 24 7 1.3186 2.3140 0.0015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0228 0.3695 -0.0055 29 1 5.1254 2.5945 -0.0008 30 1 3.2187 5.7200 0.5148 31 1 4.8376 4.9802 0.5140 32 1 4.6343 4.7992 -1.9011 33 1 5.3875 6.9059 -0.5921 34 1 2.9139 7.7766 -2.1547 35 1 3.0465 7.7233 -0.3799 36 1 4.8538 9.3783 -0.4233 37 1 3.4636 10.0198 -1.3335 38 1 7.9697 10.8861 -4.3067 39 1 6.8725 8.4088 -1.9929 40 1 6.5624 8.5296 -3.7427 41 1 6.2060 6.2062 -2.8358 42 1 4.7420 6.8982 -3.5757 43 1 1.2518 4.3902 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614817288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:08 Heat of formation + Delta-G solvation = 19.064691 kcal Electronic energy + Delta-G solvation = -22709.898101 eV Core-core repulsion = 19369.861598 eV Total energy + Delta-G solvation = -3340.036502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81246 -38.50007 -37.80845 -35.28640 -33.00229 -32.24661 -31.11534 -29.91632 -28.99449 -27.58501 -25.52832 -24.15309 -23.64768 -22.32436 -21.71296 -21.12380 -19.06747 -18.60809 -17.28647 -16.81640 -16.21608 -15.84769 -15.02234 -14.85335 -14.69298 -14.57621 -14.21743 -13.92319 -13.49164 -13.43815 -13.38245 -13.13845 -12.85751 -12.30580 -12.15899 -12.10994 -11.60641 -11.38618 -11.33618 -10.99421 -10.74450 -10.67849 -10.34707 -10.20864 -10.08309 -9.91375 -9.81696 -9.58201 -9.45782 -8.60209 -8.45429 -8.19004 -6.65083 -5.77612 -3.19388 0.97764 1.07112 2.87664 3.38581 3.45630 3.48637 3.55815 4.14438 4.42636 4.51581 4.69800 4.76838 4.83083 4.94130 5.06395 5.07601 5.28376 5.36496 5.38591 5.44401 5.50013 5.59566 5.67318 5.71297 5.78016 5.93453 6.12243 6.16263 6.24383 6.35312 6.48258 6.54117 6.63918 6.67285 6.83617 7.01049 7.05571 7.31859 7.37846 7.57310 7.66694 7.67434 7.81524 8.47087 9.23209 9.86927 10.43776 11.31182 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037787 B = 0.002607 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.825961 B =10738.893082 C =10854.255490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.313 3.687 4 C -0.191 4.191 5 C -0.037 4.037 6 C -0.164 4.164 7 C 0.106 3.894 8 N -0.684 5.684 9 C 0.096 3.904 10 C -0.117 4.117 11 C 0.144 3.856 12 N -0.592 5.592 13 C -0.250 4.250 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.905 5.905 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.174 3.826 22 C -0.141 4.141 23 C 0.160 3.840 24 N -0.541 5.541 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.336 0.664 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.014 0.986 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.016 0.984 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 -18.752 9.050 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.134 3.866 4 C -0.211 4.211 5 C -0.063 4.063 6 C -0.166 4.166 7 C -0.023 4.023 8 N -0.315 5.315 9 C -0.013 4.013 10 C -0.157 4.157 11 C 0.017 3.983 12 N -0.315 5.315 13 C -0.379 4.379 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.549 5.549 17 Si 0.731 3.269 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.047 3.953 22 C -0.180 4.180 23 C 0.004 3.996 24 N -0.264 5.264 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.154 0.846 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.526 -18.798 8.900 22.875 hybrid contribution 1.512 0.456 -0.509 1.659 sum -8.014 -18.341 8.391 21.703 Atomic orbital electron populations 1.22839 0.77294 1.02772 1.02536 1.86220 1.22895 1.24770 1.88000 1.19855 0.89435 0.84733 0.92593 1.21010 0.91993 0.99429 1.08678 1.21349 1.00466 0.90903 0.93578 1.20729 0.94916 0.96128 1.04858 1.20757 0.98838 0.91382 0.91341 1.60693 1.54855 1.04387 1.11548 1.21502 0.94675 0.87295 0.97811 1.22007 0.97405 0.95760 1.00488 1.20929 0.93780 0.93748 0.89806 1.44045 1.39467 1.25093 1.22853 1.19180 0.93813 1.08748 1.16193 0.91727 1.25042 0.95046 0.98873 1.00809 1.70030 0.97289 1.48468 1.39159 0.86311 0.77329 0.80309 0.82926 1.21423 1.21590 1.20469 1.20729 0.89461 0.83387 1.01687 1.22401 0.98843 1.00548 0.96236 1.22327 0.92359 0.93359 0.91520 1.67347 1.40896 0.98825 1.19306 0.92347 0.92254 0.88771 0.84280 0.84329 0.89927 0.94441 0.84572 0.94536 0.91728 0.93549 0.96807 0.92715 0.93685 0.96622 0.89351 0.93683 0.91822 0.82176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.42 10.48 -18.73 -0.20 -3.61 16 3 C 0.31 3.68 7.49 -17.12 -0.13 3.55 16 4 C -0.19 -1.93 10.04 -39.28 -0.39 -2.33 16 5 C -0.04 -0.36 9.85 -39.31 -0.39 -0.75 16 6 C -0.16 -1.76 5.41 -104.47 -0.57 -2.33 16 7 C 0.11 1.20 5.63 -4.98 -0.03 1.17 16 8 N -0.68 -9.27 6.30 -107.95 -0.68 -9.95 16 9 C 0.10 1.57 2.46 -67.67 -0.17 1.40 16 10 C -0.12 -2.04 5.59 -26.61 -0.15 -2.19 16 11 C 0.14 3.02 6.52 -3.71 -0.02 3.00 16 12 N -0.59 -14.83 2.99 -172.32 -0.52 -15.35 16 13 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 14 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 15 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 16 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 17 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 22 C -0.14 -2.63 5.36 -26.61 -0.14 -2.77 16 23 C 0.16 1.83 10.85 -17.56 -0.19 1.64 16 24 N -0.54 -6.62 9.22 -13.33 -0.12 -6.75 16 25 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.08 0.93 7.36 -51.93 -0.38 0.54 16 31 H 0.04 0.41 8.01 -51.93 -0.42 -0.01 16 32 H 0.34 4.35 8.32 -39.29 -0.33 4.02 16 33 H 0.04 0.62 7.80 -51.93 -0.40 0.21 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.71 7.42 -51.93 -0.39 0.32 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 2.35 6.07 -51.93 -0.31 2.03 16 41 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -30.56 348.76 -8.88 -39.44 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.84 Total: 1.11 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.38 Total: -1.23 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.70 Total: -57.68 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.20 Total: -3.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.56 -8.88 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614817288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.508 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds