Wall clock time and date at job start Tue Mar 31 2020 07:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 117.00019 * 2 1 4 4 C 1.38918 * 119.67966 * 180.02562 * 3 2 1 5 5 C 1.38385 * 119.10823 * 180.02562 * 4 3 2 6 6 C 1.38828 * 118.48626 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.35636 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.46959 * 90.00501 * 7 6 5 9 9 C 1.46906 * 110.99810 * 180.02562 * 8 7 6 10 10 C 1.53037 * 109.45796 * 275.02265 * 9 8 7 11 11 C 1.53193 * 109.31459 * 178.60393 * 10 9 8 12 12 N 1.46920 * 108.76519 * 54.65310 * 11 10 9 13 13 C 1.36934 * 120.63204 * 126.40803 * 12 11 10 14 14 H 1.08001 * 119.99846 * 331.83098 * 13 12 11 15 15 C 1.38808 * 120.00156 * 151.82383 * 13 12 11 16 16 N 1.31623 * 120.00281 * 343.07332 * 15 13 12 17 17 Si 1.86798 * 120.00224 * 163.07590 * 15 13 12 18 18 H 1.48501 * 109.47291 * 89.99820 * 17 15 13 19 19 H 1.48497 * 109.47476 * 210.00335 * 17 15 13 20 20 H 1.48504 * 109.47234 * 330.00258 * 17 15 13 21 21 C 1.46930 * 118.73889 * 306.38830 * 12 11 10 22 22 C 1.53041 * 109.45872 * 154.96758 * 9 8 7 23 23 C 1.38054 * 119.28707 * 0.02562 * 6 5 4 24 24 N 1.31960 * 120.83568 * 0.02562 * 23 6 5 25 25 H 1.08999 * 109.47004 * 299.99631 * 1 2 3 26 26 H 1.09002 * 109.47436 * 59.99220 * 1 2 3 27 27 H 1.09004 * 109.47590 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.44918 * 0.27850 * 4 3 2 29 29 H 1.07992 * 120.75684 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47084 * 209.99952 * 7 6 5 31 31 H 1.08997 * 109.47319 * 329.99844 * 7 6 5 32 32 H 1.00908 * 110.99965 * 303.94630 * 8 7 6 33 33 H 1.08996 * 109.46128 * 34.99657 * 9 8 7 34 34 H 1.09005 * 109.49598 * 298.56849 * 10 9 8 35 35 H 1.09002 * 109.49860 * 58.65819 * 10 9 8 36 36 H 1.09006 * 109.59097 * 294.86688 * 11 10 9 37 37 H 1.08999 * 109.70099 * 174.50958 * 11 10 9 38 38 H 0.97005 * 120.00361 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.58596 * 293.82037 * 21 12 11 40 40 H 1.09001 * 109.70287 * 173.47230 * 21 12 11 41 41 H 1.08997 * 109.50054 * 301.33269 * 22 9 8 42 42 H 1.09003 * 109.49465 * 61.40056 * 22 9 8 43 43 H 1.08006 * 119.57935 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6491 0.0005 7 6 3.8769 5.0197 0.0006 8 7 4.0798 5.4654 -1.3844 9 6 4.6907 6.8008 -1.4236 10 6 3.5970 7.8652 -1.3099 11 6 4.2405 9.2555 -1.3160 12 7 5.0825 9.3813 -2.5133 13 6 4.9161 10.4315 -3.3761 14 1 3.9488 10.9019 -3.4740 15 6 5.9905 10.8917 -4.1249 16 7 7.2189 10.5648 -3.7832 17 14 5.6932 11.9748 -5.6175 18 1 5.6919 13.4006 -5.2021 19 1 6.7708 11.7507 -6.6143 20 1 4.3805 11.6344 -6.2226 21 6 6.1069 8.3591 -2.7672 22 6 5.4426 6.9789 -2.7446 23 6 1.8771 3.5096 0.0010 24 7 1.3186 2.3140 0.0015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0228 0.3695 -0.0055 29 1 5.1254 2.5945 -0.0008 30 1 3.2187 5.7200 0.5148 31 1 4.8376 4.9802 0.5140 32 1 4.6343 4.7992 -1.9011 33 1 5.3875 6.9059 -0.5921 34 1 2.9139 7.7766 -2.1547 35 1 3.0465 7.7233 -0.3799 36 1 4.8538 9.3783 -0.4233 37 1 3.4636 10.0198 -1.3335 38 1 7.9697 10.8861 -4.3067 39 1 6.8725 8.4088 -1.9929 40 1 6.5624 8.5296 -3.7427 41 1 6.2060 6.2062 -2.8358 42 1 4.7420 6.8982 -3.5757 43 1 1.2518 4.3902 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614817288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:07 Heat of formation + Delta-G solvation = -2.055175 kcal Electronic energy + Delta-G solvation = -22710.813927 eV Core-core repulsion = 19369.861598 eV Total energy + Delta-G solvation = -3340.952329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60543 -39.68131 -38.91927 -36.69724 -34.40932 -33.34103 -32.46309 -31.49877 -30.44157 -28.35725 -26.94220 -25.60258 -24.44012 -23.80118 -23.07822 -22.37059 -20.68032 -19.36930 -18.71888 -18.08508 -17.00765 -16.93692 -16.81752 -15.95987 -15.76722 -15.56431 -15.37012 -15.28867 -15.09741 -14.78761 -14.39314 -14.25712 -13.96027 -13.76883 -13.55415 -13.07449 -13.01276 -12.81678 -12.61662 -12.47995 -12.24585 -12.12977 -12.03150 -11.95945 -11.73768 -11.26145 -11.13179 -10.84946 -10.60542 -10.52418 -9.46401 -9.24464 -8.66447 -7.86873 -5.31526 0.16853 0.29277 1.46661 1.48379 1.58213 2.16553 2.52245 2.71966 3.25372 3.35516 3.41880 3.72743 3.84725 3.97456 4.06454 4.07776 4.15966 4.25870 4.43017 4.46301 4.49838 4.57590 4.59133 4.72452 4.74276 4.78459 4.85530 4.91406 4.98699 5.02406 5.08016 5.15055 5.29508 5.33599 5.44750 5.49496 5.55933 5.66496 5.76587 6.15038 6.24769 6.40833 6.51982 6.86146 7.16467 7.88287 8.39448 9.19588 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037787 B = 0.002607 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.825961 B =10738.893082 C =10854.255490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.295 3.705 4 C -0.193 4.193 5 C -0.033 4.033 6 C -0.166 4.166 7 C 0.111 3.889 8 N -0.683 5.683 9 C 0.108 3.892 10 C -0.104 4.104 11 C 0.140 3.860 12 N -0.611 5.611 13 C -0.262 4.262 14 H 0.064 0.936 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.272 1.272 21 C 0.179 3.821 22 C -0.126 4.126 23 C 0.148 3.852 24 N -0.559 5.559 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.343 0.657 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.014 0.986 37 H 0.052 0.948 38 H 0.250 0.750 39 H -0.003 1.003 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 -20.112 9.586 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.116 3.884 4 C -0.213 4.213 5 C -0.058 4.058 6 C -0.169 4.169 7 C -0.018 4.018 8 N -0.314 5.314 9 C -0.001 4.001 10 C -0.144 4.144 11 C 0.014 3.986 12 N -0.335 5.335 13 C -0.392 4.392 14 H 0.082 0.918 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.197 1.197 21 C 0.053 3.947 22 C -0.166 4.166 23 C -0.007 4.007 24 N -0.282 5.282 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.176 0.824 29 H 0.181 0.819 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.172 -20.181 9.455 24.498 hybrid contribution 1.666 0.838 -0.611 1.962 sum -8.506 -19.343 8.845 22.907 Atomic orbital electron populations 1.23013 0.76101 1.04510 1.02051 1.86208 1.24176 1.24615 1.87980 1.20204 0.90290 0.84858 0.93037 1.21294 0.91591 1.00480 1.07979 1.21640 1.01625 0.90279 0.92294 1.20682 0.94712 0.96182 1.05292 1.20750 0.99526 0.91643 0.89869 1.60577 1.54394 1.03162 1.13317 1.21224 0.94019 0.88718 0.96172 1.21825 0.97333 0.93780 1.01433 1.21086 0.93230 0.96104 0.88187 1.44331 1.40112 1.25031 1.24044 1.19496 0.93791 1.09169 1.16734 0.91819 1.25784 0.94850 1.00673 1.03387 1.70177 0.97899 1.49916 1.40166 0.85306 0.77197 0.78585 0.79544 1.21082 1.21798 1.19703 1.20543 0.89294 0.85916 0.98966 1.22154 0.99099 0.97919 0.97420 1.22537 0.93006 0.93435 0.91769 1.67329 1.41571 0.99276 1.20048 0.92610 0.92920 0.85978 0.82436 0.81922 0.89639 0.93244 0.83825 0.94393 0.93015 0.90603 0.96843 0.92916 0.94114 0.98533 0.92881 0.91352 0.92985 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -6.69 10.48 -89.94 -0.94 -7.63 16 3 C 0.29 6.54 7.49 84.79 0.63 7.18 16 4 C -0.19 -3.49 10.04 22.47 0.23 -3.26 16 5 C -0.03 -0.54 9.85 22.45 0.22 -0.32 16 6 C -0.17 -3.15 5.41 -19.77 -0.11 -3.26 16 7 C 0.11 2.16 5.63 85.56 0.48 2.64 16 8 N -0.68 -16.56 6.30 -495.44 -3.12 -19.68 16 9 C 0.11 3.30 2.46 44.94 0.11 3.41 16 10 C -0.10 -3.44 5.59 30.67 0.17 -3.27 16 11 C 0.14 5.78 6.52 86.36 0.56 6.34 16 12 N -0.61 -30.95 2.99 -699.10 -2.09 -33.04 16 13 C -0.26 -14.59 9.58 84.03 0.81 -13.78 16 14 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 15 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 16 N -0.94 -55.57 11.19 21.65 0.24 -55.33 16 17 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 C 0.18 8.59 5.30 86.36 0.46 9.05 16 22 C -0.13 -4.60 5.36 30.67 0.16 -4.43 16 23 C 0.15 3.13 10.85 84.63 0.92 4.05 16 24 N -0.56 -13.09 9.22 -308.95 -2.85 -15.94 16 25 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 26 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 27 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.09 1.64 7.36 -2.39 -0.02 1.62 16 31 H 0.05 0.88 8.01 -2.39 -0.02 0.86 16 32 H 0.34 7.79 8.32 -89.69 -0.75 7.04 16 33 H 0.04 1.18 7.80 -2.39 -0.02 1.16 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.08 2.08 7.42 -2.39 -0.02 2.06 16 36 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 38 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.05 2.90 6.07 -2.39 -0.01 2.89 16 41 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.50 348.76 -0.24 -66.74 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.25 Total: 14.02 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.24 Total: 3.60 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -7.82 Total: -123.99 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.94 Total: -7.63 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.50 -0.24 -66.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614817288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.681 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds