Wall clock time and date at job start Tue Mar 31 2020 07:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35676 * 117.00514 * 2 1 4 4 C 1.38916 * 119.68723 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.11095 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48445 * 359.74113 * 5 4 3 7 7 C 1.38049 * 119.28935 * 0.52307 * 6 5 4 8 8 C 1.50700 * 119.58317 * 179.73499 * 7 6 5 9 9 N 1.46903 * 109.46813 * 94.72675 * 8 7 6 10 10 C 1.46899 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.53039 * 109.46583 * 205.00192 * 10 9 8 12 12 C 1.53192 * 109.31624 * 178.61346 * 11 10 9 13 13 N 1.46925 * 108.89163 * 54.56131 * 12 11 10 14 14 C 1.36940 * 120.62821 * 126.46045 * 13 12 11 15 15 H 1.08000 * 119.99751 * 331.92858 * 14 13 12 16 16 C 1.38810 * 120.00078 * 151.92771 * 14 13 12 17 17 N 1.31619 * 119.99689 * 343.17980 * 16 14 13 18 18 Si 1.86795 * 119.99988 * 163.18147 * 16 14 13 19 19 H 1.48509 * 109.47304 * 59.99932 * 18 16 14 20 20 H 1.48501 * 109.47440 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47535 * 299.99868 * 18 16 14 22 22 C 1.46954 * 118.71946 * 306.64559 * 13 12 11 23 23 C 1.53044 * 109.46101 * 84.92983 * 10 9 8 24 24 N 1.31959 * 120.83604 * 359.46251 * 7 6 5 25 25 H 1.09008 * 109.46966 * 299.99490 * 1 2 3 26 26 H 1.09004 * 109.47434 * 59.99284 * 1 2 3 27 27 H 1.08997 * 109.47440 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.44693 * 359.96463 * 4 3 2 29 29 H 1.08002 * 120.75513 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.35491 * 180.26343 * 6 5 4 31 31 H 1.09000 * 109.47062 * 334.73044 * 8 7 6 32 32 H 1.08997 * 109.47256 * 214.72884 * 8 7 6 33 33 H 1.00899 * 110.99999 * 56.04963 * 9 8 7 34 34 H 1.09004 * 109.44624 * 324.97296 * 10 9 8 35 35 H 1.09005 * 109.49298 * 58.66331 * 11 10 9 36 36 H 1.08998 * 109.49763 * 298.56931 * 11 10 9 37 37 H 1.08997 * 109.58838 * 174.42439 * 12 11 10 38 38 H 1.09002 * 109.58672 * 294.71002 * 12 11 10 39 39 H 0.97000 * 119.99637 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47125 * 293.56762 * 22 13 12 41 41 H 1.09000 * 109.71403 * 173.28134 * 22 13 12 42 42 H 1.09000 * 109.50000 * 301.34400 * 23 10 9 43 43 H 1.09003 * 109.49095 * 61.43609 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6490 -0.0066 7 6 1.8772 3.5096 -0.0003 8 6 1.0046 4.7384 -0.0001 9 7 0.6222 5.0675 -1.3798 10 6 -0.2313 6.2624 -1.4187 11 6 -1.0958 6.2308 -2.6812 12 6 -2.0090 7.4606 -2.7009 13 7 -1.1835 8.6684 -2.5651 14 6 -1.2824 9.6870 -3.4750 15 1 -1.5811 9.4761 -4.4912 16 6 -0.9989 10.9905 -3.0912 17 7 -0.9608 11.3069 -1.8141 18 14 -0.6716 12.2954 -4.3870 19 1 -1.8616 12.4308 -5.2650 20 1 -0.3968 13.5949 -3.7227 21 1 0.5034 11.8984 -5.2037 22 6 -0.2468 8.7603 -1.4365 23 6 0.6467 7.5159 -1.4309 24 7 1.3186 2.3141 0.0002 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0229 0.3694 -0.0004 29 1 5.1255 2.5945 -0.0019 30 1 3.6995 4.6313 -0.0114 31 1 1.5539 5.5739 0.4338 32 1 0.1082 4.5473 0.5897 33 1 0.1681 4.2845 -1.8257 34 1 -0.8742 6.2780 -0.5386 35 1 -1.7038 5.3261 -2.6831 36 1 -0.4538 6.2401 -3.5620 37 1 -2.5550 7.4952 -3.6436 38 1 -2.7145 7.4052 -1.8719 39 1 -0.7630 12.2178 -1.5459 40 1 -0.8069 8.8121 -0.5028 41 1 0.3701 9.6526 -1.5425 42 1 1.2789 7.5259 -0.5430 43 1 1.2722 7.5132 -2.3235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616473448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:13 Heat of formation + Delta-G solvation = 20.263800 kcal Electronic energy + Delta-G solvation = -22959.509171 eV Core-core repulsion = 19619.524665 eV Total energy + Delta-G solvation = -3339.984505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79667 -38.42363 -37.79283 -35.18807 -32.94564 -32.17481 -31.00813 -29.91491 -29.21726 -27.55868 -25.82290 -24.21777 -23.12056 -22.39921 -21.84222 -21.11711 -19.07930 -18.34950 -16.96453 -16.64772 -16.19970 -16.12792 -15.49367 -14.87442 -14.65547 -14.61647 -14.10723 -13.83480 -13.44430 -13.38603 -13.17368 -13.07059 -12.49057 -12.32068 -12.16964 -12.04844 -11.78442 -11.37274 -11.30514 -10.98714 -10.84468 -10.68304 -10.24334 -10.18940 -10.05337 -9.88335 -9.79790 -9.53114 -9.47508 -8.61539 -8.45153 -8.16350 -6.63856 -5.75850 -3.18009 0.95810 1.14948 2.90117 3.40769 3.46273 3.48062 3.55410 3.97934 4.52026 4.52688 4.66924 4.87214 4.94040 5.04838 5.11598 5.14432 5.32650 5.36870 5.41593 5.44694 5.49140 5.56325 5.70799 5.76543 5.89007 5.92736 6.06081 6.15727 6.26689 6.35974 6.42873 6.59936 6.66131 6.78024 6.80330 7.01659 7.04904 7.33460 7.42588 7.58210 7.71183 7.74193 7.82853 8.48781 9.24878 9.88264 10.45285 11.32947 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.002937 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.891785 B = 9532.539041 C =10017.700838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.318 3.682 4 C -0.196 4.196 5 C -0.043 4.043 6 C -0.188 4.188 7 C 0.178 3.822 8 C 0.108 3.892 9 N -0.680 5.680 10 C 0.097 3.903 11 C -0.133 4.133 12 C 0.149 3.851 13 N -0.592 5.592 14 C -0.252 4.252 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.171 3.829 23 C -0.125 4.125 24 N -0.537 5.537 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.338 0.662 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.254 0.746 40 H 0.015 0.985 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 -19.847 5.537 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.139 3.861 4 C -0.217 4.217 5 C -0.068 4.068 6 C -0.208 4.208 7 C 0.041 3.959 8 C -0.022 4.022 9 N -0.311 5.311 10 C -0.012 4.012 11 C -0.172 4.172 12 C 0.021 3.979 13 N -0.314 5.314 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.044 3.956 23 C -0.165 4.165 24 N -0.261 5.261 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.751 -19.656 5.485 21.495 hybrid contribution 0.007 0.415 -0.235 0.477 sum 6.758 -19.241 5.250 21.058 Atomic orbital electron populations 1.22838 0.77228 1.02776 1.02598 1.86219 1.22936 1.24686 1.88017 1.19787 0.89368 0.84549 0.92429 1.21025 0.91992 0.99580 1.09094 1.21422 1.00581 0.91216 0.93592 1.21849 0.94012 1.00140 1.04839 1.20878 0.92140 0.91128 0.91762 1.20874 0.97195 0.92391 0.91755 1.60694 1.47924 1.07677 1.14838 1.21519 0.92643 0.89749 0.97281 1.22208 0.98518 0.98849 0.97657 1.20845 0.91842 0.86422 0.98741 1.44043 1.41821 1.15927 1.29659 1.19147 1.42794 0.85794 0.90426 0.91794 1.25038 1.01787 0.97008 0.95813 1.70024 1.52380 1.18470 1.13964 0.86368 0.78448 0.80901 0.81033 1.20932 1.21660 1.21004 1.20798 0.90867 0.94796 0.89098 1.22210 0.98391 0.95280 1.00572 1.67085 1.41165 0.98474 1.19389 0.92355 0.92213 0.88760 0.84367 0.84108 0.84207 0.89036 0.93595 0.84453 0.94448 0.93500 0.91500 0.92691 0.96669 0.93624 0.96717 0.89403 0.93643 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.55 10.48 -18.73 -0.20 -3.74 16 3 C 0.32 3.88 7.49 -17.12 -0.13 3.75 16 4 C -0.20 -1.99 10.04 -39.28 -0.39 -2.39 16 5 C -0.04 -0.40 10.17 -39.31 -0.40 -0.80 16 6 C -0.19 -2.04 9.71 -39.43 -0.38 -2.43 16 7 C 0.18 2.24 6.29 -82.61 -0.52 1.72 16 8 C 0.11 1.41 5.79 -4.97 -0.03 1.38 16 9 N -0.68 -10.03 6.30 -107.94 -0.68 -10.71 16 10 C 0.10 1.65 2.46 -67.67 -0.17 1.48 16 11 C -0.13 -2.34 5.36 -26.61 -0.14 -2.48 16 12 C 0.15 3.15 6.51 -3.71 -0.02 3.12 16 13 N -0.59 -14.98 3.00 -172.30 -0.52 -15.50 16 14 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 15 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.36 11.20 55.49 0.62 -25.73 16 18 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.17 4.09 5.30 -3.70 -0.02 4.07 16 23 C -0.12 -2.42 5.59 -26.61 -0.15 -2.57 16 24 N -0.54 -7.02 9.13 -9.55 -0.09 -7.11 16 25 H 0.06 0.53 8.10 -51.92 -0.42 0.11 16 26 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.09 1.15 7.31 -51.93 -0.38 0.77 16 32 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.34 4.87 8.32 -39.29 -0.33 4.54 16 34 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 35 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 42 H 0.04 0.80 7.42 -51.93 -0.39 0.41 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -30.66 348.90 -9.00 -39.66 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.84 Total: 1.96 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.54 Total: -0.88 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.66 Total: -59.04 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.66 -9.00 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616473448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.925 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds