Wall clock time and date at job start Tue Mar 31 2020 07:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35676 * 117.00514 * 2 1 4 4 C 1.38916 * 119.68723 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.11095 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48445 * 359.74113 * 5 4 3 7 7 C 1.38049 * 119.28935 * 0.52307 * 6 5 4 8 8 C 1.50700 * 119.58317 * 179.73499 * 7 6 5 9 9 N 1.46903 * 109.46813 * 94.72675 * 8 7 6 10 10 C 1.46899 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.53039 * 109.46583 * 205.00192 * 10 9 8 12 12 C 1.53192 * 109.31624 * 178.61346 * 11 10 9 13 13 N 1.46925 * 108.89163 * 54.56131 * 12 11 10 14 14 C 1.36940 * 120.62821 * 126.46045 * 13 12 11 15 15 H 1.08000 * 119.99751 * 331.92858 * 14 13 12 16 16 C 1.38810 * 120.00078 * 151.92771 * 14 13 12 17 17 N 1.31619 * 119.99689 * 343.17980 * 16 14 13 18 18 Si 1.86795 * 119.99988 * 163.18147 * 16 14 13 19 19 H 1.48509 * 109.47304 * 59.99932 * 18 16 14 20 20 H 1.48501 * 109.47440 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47535 * 299.99868 * 18 16 14 22 22 C 1.46954 * 118.71946 * 306.64559 * 13 12 11 23 23 C 1.53044 * 109.46101 * 84.92983 * 10 9 8 24 24 N 1.31959 * 120.83604 * 359.46251 * 7 6 5 25 25 H 1.09008 * 109.46966 * 299.99490 * 1 2 3 26 26 H 1.09004 * 109.47434 * 59.99284 * 1 2 3 27 27 H 1.08997 * 109.47440 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.44693 * 359.96463 * 4 3 2 29 29 H 1.08002 * 120.75513 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.35491 * 180.26343 * 6 5 4 31 31 H 1.09000 * 109.47062 * 334.73044 * 8 7 6 32 32 H 1.08997 * 109.47256 * 214.72884 * 8 7 6 33 33 H 1.00899 * 110.99999 * 56.04963 * 9 8 7 34 34 H 1.09004 * 109.44624 * 324.97296 * 10 9 8 35 35 H 1.09005 * 109.49298 * 58.66331 * 11 10 9 36 36 H 1.08998 * 109.49763 * 298.56931 * 11 10 9 37 37 H 1.08997 * 109.58838 * 174.42439 * 12 11 10 38 38 H 1.09002 * 109.58672 * 294.71002 * 12 11 10 39 39 H 0.97000 * 119.99637 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47125 * 293.56762 * 22 13 12 41 41 H 1.09000 * 109.71403 * 173.28134 * 22 13 12 42 42 H 1.09000 * 109.50000 * 301.34400 * 23 10 9 43 43 H 1.09003 * 109.49095 * 61.43609 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6490 -0.0066 7 6 1.8772 3.5096 -0.0003 8 6 1.0046 4.7384 -0.0001 9 7 0.6222 5.0675 -1.3798 10 6 -0.2313 6.2624 -1.4187 11 6 -1.0958 6.2308 -2.6812 12 6 -2.0090 7.4606 -2.7009 13 7 -1.1835 8.6684 -2.5651 14 6 -1.2824 9.6870 -3.4750 15 1 -1.5811 9.4761 -4.4912 16 6 -0.9989 10.9905 -3.0912 17 7 -0.9608 11.3069 -1.8141 18 14 -0.6716 12.2954 -4.3870 19 1 -1.8616 12.4308 -5.2650 20 1 -0.3968 13.5949 -3.7227 21 1 0.5034 11.8984 -5.2037 22 6 -0.2468 8.7603 -1.4365 23 6 0.6467 7.5159 -1.4309 24 7 1.3186 2.3141 0.0002 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0229 0.3694 -0.0004 29 1 5.1255 2.5945 -0.0019 30 1 3.6995 4.6313 -0.0114 31 1 1.5539 5.5739 0.4338 32 1 0.1082 4.5473 0.5897 33 1 0.1681 4.2845 -1.8257 34 1 -0.8742 6.2780 -0.5386 35 1 -1.7038 5.3261 -2.6831 36 1 -0.4538 6.2401 -3.5620 37 1 -2.5550 7.4952 -3.6436 38 1 -2.7145 7.4052 -1.8719 39 1 -0.7630 12.2178 -1.5459 40 1 -0.8069 8.8121 -0.5028 41 1 0.3701 9.6526 -1.5425 42 1 1.2789 7.5259 -0.5430 43 1 1.2722 7.5132 -2.3235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616473448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:12 Heat of formation + Delta-G solvation = -1.051033 kcal Electronic energy + Delta-G solvation = -22960.433451 eV Core-core repulsion = 19619.524665 eV Total energy + Delta-G solvation = -3340.908786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62200 -39.68865 -38.91230 -36.68011 -34.35898 -33.34305 -32.27874 -31.60530 -30.65767 -28.43433 -27.13861 -25.82816 -24.02448 -23.81329 -23.20291 -22.50952 -20.74013 -19.18963 -18.69290 -17.72889 -17.05159 -16.97791 -16.87333 -16.43714 -16.03736 -15.69281 -15.36917 -15.28811 -14.98859 -14.79604 -14.31087 -14.20814 -13.79492 -13.70472 -13.39898 -13.14759 -12.99095 -12.85584 -12.62203 -12.55083 -12.45757 -12.11634 -12.04674 -11.92951 -11.77074 -11.30253 -11.16282 -10.84154 -10.61639 -10.53008 -9.49734 -9.35288 -8.67846 -7.86708 -5.32020 0.12652 0.35625 1.47623 1.50327 1.57109 2.15624 2.52470 2.67098 3.08388 3.27249 3.43350 3.70705 3.78695 3.98870 4.11627 4.13239 4.20550 4.36734 4.41104 4.41493 4.44691 4.52634 4.56549 4.58466 4.72641 4.75520 4.79570 4.87505 4.97734 5.05735 5.08822 5.13148 5.21440 5.28286 5.39228 5.51824 5.53795 5.65710 5.77278 6.04844 6.24416 6.37994 6.42445 6.87826 7.16086 7.87156 8.39060 9.19991 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031492 B = 0.002937 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.891785 B = 9532.539041 C =10017.700838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.320 6.320 3 C 0.296 3.704 4 C -0.195 4.195 5 C -0.036 4.036 6 C -0.192 4.192 7 C 0.157 3.843 8 C 0.112 3.888 9 N -0.675 5.675 10 C 0.108 3.892 11 C -0.120 4.120 12 C 0.144 3.856 13 N -0.611 5.611 14 C -0.265 4.265 15 H 0.065 0.935 16 C -0.050 4.050 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.178 3.822 23 C -0.109 4.109 24 N -0.554 5.554 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.122 0.878 28 H 0.160 0.840 29 H 0.176 0.824 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.342 0.658 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.013 0.987 39 H 0.250 0.750 40 H -0.006 1.006 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.218 -21.557 5.111 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.228 6.228 3 C 0.117 3.883 4 C -0.216 4.216 5 C -0.061 4.061 6 C -0.213 4.213 7 C 0.021 3.979 8 C -0.017 4.017 9 N -0.307 5.307 10 C -0.002 4.002 11 C -0.159 4.159 12 C 0.018 3.982 13 N -0.335 5.335 14 C -0.396 4.396 15 H 0.083 0.917 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.204 1.204 22 C 0.052 3.948 23 C -0.149 4.149 24 N -0.279 5.279 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.178 0.822 29 H 0.194 0.806 30 H 0.169 0.831 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.161 0.839 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.985 -21.404 5.051 23.397 hybrid contribution -0.396 0.866 -0.070 0.954 sum 7.590 -20.538 4.981 22.455 Atomic orbital electron populations 1.22976 0.76272 1.04426 1.01877 1.86210 1.23974 1.24518 1.88096 1.20157 0.90360 0.84523 0.93286 1.21399 0.91422 1.00945 1.07788 1.21830 1.02206 0.90171 0.91874 1.22077 0.93510 1.01420 1.04266 1.20828 0.92844 0.90716 0.93551 1.20841 0.97284 0.93119 0.90490 1.60559 1.46980 1.06966 1.16191 1.21254 0.92221 0.89804 0.96888 1.22028 0.98129 0.98198 0.97554 1.20997 0.92216 0.86355 0.98642 1.44322 1.42980 1.16705 1.29485 1.19486 1.42295 0.86733 0.91048 0.91701 1.25804 1.02094 0.99009 0.97662 1.70179 1.53612 1.18564 1.15745 0.85341 0.78446 0.78039 0.78615 1.20112 1.21917 1.20433 1.20593 0.90633 0.95679 0.87910 1.21954 0.97756 0.94334 1.00854 1.66991 1.42003 0.98902 1.20039 0.92974 0.92987 0.85969 0.82188 0.80620 0.83062 0.88608 0.94026 0.83912 0.94744 0.90400 0.92234 0.92585 0.96881 0.94075 0.98759 0.92791 0.91812 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.84 16 2 O -0.32 -6.91 10.48 -89.94 -0.94 -7.85 16 3 C 0.30 6.80 7.49 84.79 0.63 7.44 16 4 C -0.20 -3.48 10.04 22.47 0.23 -3.25 16 5 C -0.04 -0.55 10.17 22.45 0.23 -0.32 16 6 C -0.19 -3.75 9.71 22.37 0.22 -3.53 16 7 C 0.16 3.73 6.29 42.49 0.27 4.00 16 8 C 0.11 2.79 5.79 85.56 0.50 3.28 16 9 N -0.68 -18.81 6.30 -495.43 -3.12 -21.93 16 10 C 0.11 3.55 2.46 44.94 0.11 3.66 16 11 C -0.12 -4.05 5.36 30.67 0.16 -3.88 16 12 C 0.14 6.05 6.51 86.36 0.56 6.61 16 13 N -0.61 -31.38 3.00 -699.03 -2.10 -33.48 16 14 C -0.27 -14.89 9.58 84.03 0.81 -14.09 16 15 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 16 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 17 N -0.94 -55.94 11.20 21.65 0.24 -55.70 16 18 Si 0.97 45.34 29.59 68.60 2.03 47.37 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 C 0.18 8.75 5.30 86.36 0.46 9.20 16 23 C -0.11 -4.20 5.59 30.67 0.17 -4.03 16 24 N -0.55 -13.92 9.13 -296.99 -2.71 -16.63 16 25 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 26 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 27 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.10 2.27 7.31 -2.39 -0.02 2.25 16 32 H 0.04 1.07 8.05 -2.39 -0.02 1.05 16 33 H 0.34 9.23 8.32 -89.69 -0.75 8.48 16 34 H 0.03 1.18 7.80 -2.38 -0.02 1.16 16 35 H 0.08 2.17 8.10 -2.38 -0.02 2.16 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 41 H 0.05 3.00 6.07 -2.39 -0.01 2.99 16 42 H 0.06 2.19 7.42 -2.39 -0.02 2.18 16 43 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -66.93 348.90 -0.42 -67.34 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.25 Total: 16.41 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.93 Total: 4.48 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -7.69 Total: -127.75 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.94 Total: -7.85 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -66.93 -0.42 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616473448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.291 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds