Wall clock time and date at job start Tue Mar 31 2020 07:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34876 * 125.65492 * 2 1 4 4 C 1.35632 * 109.06841 * 180.02562 * 3 2 1 5 5 C 1.39596 * 107.90315 * 0.02562 * 4 3 2 6 6 C 1.37873 * 125.64356 * 179.70468 * 2 1 3 7 7 C 1.41359 * 126.30512 * 359.97438 * 6 2 1 8 8 O 1.21438 * 119.99561 * 0.02562 * 7 6 2 9 9 C 1.50701 * 119.99874 * 180.02562 * 7 6 2 10 10 N 1.46897 * 109.46776 * 179.97438 * 9 7 6 11 11 C 1.46957 * 111.00579 * 293.80248 * 10 9 7 12 12 C 1.53042 * 109.36757 * 176.80982 * 11 10 9 13 13 N 1.46960 * 109.36352 * 58.40317 * 12 11 10 14 14 C 1.46899 * 110.99924 * 176.81245 * 13 12 11 15 15 C 1.50694 * 109.47444 * 58.98825 * 14 13 12 16 16 H 1.07998 * 119.99973 * 4.99547 * 15 14 13 17 17 C 1.37876 * 120.00070 * 184.98710 * 15 14 13 18 18 N 1.31514 * 119.99893 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00083 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47093 * 90.00012 * 19 17 15 21 21 H 1.48503 * 109.46811 * 210.00121 * 19 17 15 22 22 H 1.48498 * 109.47047 * 329.99800 * 19 17 15 23 23 C 1.46950 * 110.87779 * 300.67783 * 13 12 11 24 24 C 1.46960 * 110.99899 * 170.00296 * 10 9 7 25 25 H 1.09002 * 109.47277 * 90.01758 * 1 2 3 26 26 H 1.09005 * 109.46300 * 330.02175 * 1 2 3 27 27 H 1.08993 * 109.47472 * 210.02472 * 1 2 3 28 28 H 1.08004 * 125.46119 * 359.97438 * 3 2 1 29 29 H 1.08000 * 126.05259 * 180.02562 * 4 3 2 30 30 H 1.07995 * 126.53446 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.47012 * 300.00069 * 9 7 6 32 32 H 1.09003 * 109.46641 * 60.00719 * 9 7 6 33 33 H 1.09002 * 109.48571 * 296.78271 * 11 10 9 34 34 H 1.09000 * 109.48938 * 56.84216 * 11 10 9 35 35 H 1.09000 * 109.49464 * 298.43534 * 12 11 10 36 36 H 1.09001 * 109.49053 * 178.36921 * 12 11 10 37 37 H 1.09004 * 109.47123 * 178.99480 * 14 13 12 38 38 H 1.09002 * 109.47173 * 298.98877 * 14 13 12 39 39 H 0.97003 * 119.99697 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.49264 * 299.35232 * 23 13 12 41 41 H 1.09009 * 109.48832 * 179.28977 * 23 13 12 42 42 H 1.09008 * 109.48691 * 303.15587 * 24 10 9 43 43 H 1.08987 * 109.48881 * 63.22241 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0959 0.0000 4 6 3.5511 0.7087 -0.0006 5 6 3.5831 -0.6868 -0.0015 6 6 2.2684 -1.1204 0.0058 7 6 1.8304 -2.4644 0.0132 8 8 0.6423 -2.7157 0.0145 9 6 2.8378 -3.5852 0.0195 10 7 2.1350 -4.8751 0.0272 11 6 1.3971 -5.0655 1.2838 12 6 0.6169 -6.3805 1.2200 13 7 1.5514 -7.4908 0.9880 14 6 0.8486 -8.7807 0.9957 15 6 -0.2107 -8.7821 -0.0762 16 1 -0.2950 -7.9448 -0.7531 17 6 -1.0720 -9.8524 -0.1929 18 7 -1.9960 -9.8538 -1.1287 19 14 -0.9264 -11.3005 0.9781 20 1 -1.7806 -11.0617 2.1692 21 1 -1.3706 -12.5395 0.2906 22 1 0.4878 -11.4513 1.4054 23 6 2.2892 -7.3005 -0.2685 24 6 3.0695 -5.9854 -0.2047 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3632 0.8903 0.5135 27 1 -0.3634 -0.8897 0.5142 28 1 1.9016 2.1178 -0.0004 29 1 4.4095 1.3641 -0.0003 30 1 4.4654 -1.3096 -0.0018 31 1 3.4629 -3.5169 -0.8708 32 1 3.4627 -3.5070 0.9092 33 1 2.0997 -5.0994 2.1165 34 1 0.7030 -4.2374 1.4269 35 1 -0.1047 -6.3361 0.4042 36 1 0.0918 -6.5379 2.1621 37 1 1.5606 -9.5835 0.8040 38 1 0.3813 -8.9341 1.9684 39 1 -2.6022 -10.6066 -1.2105 40 1 1.5867 -7.2665 -1.1012 41 1 2.9834 -8.1287 -0.4116 42 1 3.5946 -5.8280 -1.1469 43 1 3.7910 -6.0298 0.6110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000640139508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:08 Heat of formation + Delta-G solvation = 41.504998 kcal Electronic energy + Delta-G solvation = -23396.793893 eV Core-core repulsion = 20057.730475 eV Total energy + Delta-G solvation = -3339.063418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70743 -39.36849 -37.94908 -34.99810 -33.23412 -32.28482 -30.74346 -30.27518 -28.85000 -26.76613 -26.58516 -24.25118 -22.93877 -22.33089 -21.22433 -20.58102 -19.04075 -19.00694 -17.40351 -16.73971 -15.92049 -15.72802 -15.42487 -14.96394 -14.78869 -14.18435 -14.17462 -14.13357 -13.80733 -13.55394 -13.44982 -13.03741 -12.58472 -12.53681 -12.46626 -12.27650 -12.17829 -11.95966 -11.71791 -11.16578 -10.91683 -10.65681 -10.46332 -10.23972 -10.05431 -9.93789 -9.52338 -9.37136 -9.00587 -8.54228 -8.47023 -8.02333 -7.13741 -6.04638 -4.04126 0.98847 2.43708 2.55247 3.07803 3.30927 3.38307 3.42389 3.88291 4.39800 4.44047 4.57347 4.71695 4.99108 5.01906 5.10552 5.16016 5.24476 5.26135 5.28586 5.37470 5.42279 5.50791 5.66096 5.80280 5.88149 5.94481 5.95850 6.02071 6.20334 6.35375 6.50677 6.62411 6.73670 6.84318 6.94047 6.94996 6.99188 7.10412 7.27750 7.38512 7.61786 7.69111 8.11512 8.15792 8.51292 9.00413 9.58042 11.08391 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032250 B = 0.003239 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.001076 B = 8643.575501 C = 9132.428894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.408 5.408 3 C 0.020 3.980 4 C -0.216 4.216 5 C -0.119 4.119 6 C -0.088 4.088 7 C 0.416 3.584 8 O -0.447 6.447 9 C 0.023 3.977 10 N -0.524 5.524 11 C 0.056 3.944 12 C 0.066 3.934 13 N -0.538 5.538 14 C 0.155 3.845 15 C -0.549 4.549 16 H 0.077 0.923 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.062 3.938 24 C 0.061 3.939 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.167 0.833 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.263 0.737 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 21.464 3.281 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.080 5.080 3 C -0.117 4.117 4 C -0.240 4.240 5 C -0.145 4.145 6 C -0.198 4.198 7 C 0.295 3.705 8 O -0.323 6.323 9 C -0.107 4.107 10 N -0.249 5.249 11 C -0.071 4.071 12 C -0.063 4.063 13 N -0.262 5.262 14 C 0.028 3.972 15 C -0.588 4.588 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.067 4.067 24 C -0.067 4.067 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.184 0.816 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.297 21.158 3.212 23.749 hybrid contribution -0.035 -0.655 0.441 0.790 sum 10.263 20.503 3.653 23.217 Atomic orbital electron populations 1.22355 0.75943 1.05376 1.04247 1.43978 1.07021 1.05435 1.51523 1.22027 0.91008 0.91794 1.06897 1.20878 0.95928 0.95281 1.11898 1.21597 0.94733 0.95321 1.02894 1.19967 0.91015 0.89084 1.19780 1.20244 0.90229 0.87319 0.72719 1.90556 1.18726 1.86533 1.36516 1.22214 0.95481 0.89907 1.03055 1.61925 1.26701 1.00046 1.36243 1.22364 0.97016 0.99242 0.88512 1.21911 0.94325 0.88568 1.01501 1.62635 1.27486 1.03557 1.32542 1.20140 0.93382 0.87110 0.96557 1.21727 1.14899 1.05972 1.16186 0.90458 1.24981 0.94788 0.98160 0.95187 1.69941 1.19116 1.31525 1.33170 0.86800 0.79037 0.82280 0.81274 1.20260 1.21379 1.18922 1.21947 0.97087 0.94344 0.93295 1.22242 0.93628 0.90940 0.99892 0.90296 0.89907 0.87672 0.81560 0.83983 0.83457 0.87615 0.91682 0.95333 0.90014 0.92427 0.91533 0.95544 0.95759 0.92766 0.92793 0.91303 0.91030 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.54 59.85 0.63 1.17 16 2 N -0.41 -4.26 3.15 -121.91 -0.38 -4.65 16 3 C 0.02 0.17 11.34 -17.15 -0.19 -0.02 16 4 C -0.22 -1.84 10.81 -40.01 -0.43 -2.27 16 5 C -0.12 -1.15 10.31 -39.00 -0.40 -1.55 16 6 C -0.09 -1.04 6.70 -83.89 -0.56 -1.60 16 7 C 0.42 5.70 6.64 -33.12 -0.22 5.48 16 8 O -0.45 -7.51 12.50 5.42 0.07 -7.44 16 9 C 0.02 0.29 4.70 -4.98 -0.02 0.26 16 10 N -0.52 -8.64 4.44 -235.92 -1.05 -9.69 16 11 C 0.06 0.99 5.26 -3.77 -0.02 0.97 16 12 C 0.07 1.38 5.24 -3.77 -0.02 1.36 16 13 N -0.54 -11.70 4.92 -235.92 -1.16 -12.86 16 14 C 0.15 3.83 4.21 -4.98 -0.02 3.81 16 15 C -0.55 -15.71 8.21 -34.44 -0.28 -16.00 16 16 H 0.08 2.44 6.07 -52.49 -0.32 2.12 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 19 Si 0.88 21.82 27.37 -169.99 -4.65 17.17 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.26 -6.32 6.69 56.52 0.38 -5.94 16 23 C 0.06 1.23 5.32 -3.77 -0.02 1.21 16 24 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.10 1.14 6.24 -51.93 -0.32 0.82 16 28 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.15 1.09 7.93 -52.49 -0.42 0.68 16 31 H 0.11 1.11 8.03 -51.93 -0.42 0.70 16 32 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.45 5.85 -51.93 -0.30 1.14 16 35 H 0.06 1.42 6.62 -51.93 -0.34 1.07 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.03 0.66 7.52 -51.93 -0.39 0.27 16 38 H 0.02 0.60 7.29 -51.93 -0.38 0.23 16 39 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.05 1.24 6.78 -51.93 -0.35 0.89 16 41 H 0.07 1.30 8.12 -51.92 -0.42 0.87 16 42 H 0.07 0.98 8.07 -51.92 -0.42 0.56 16 43 H 0.04 0.53 8.14 -51.94 -0.42 0.11 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -34.01 339.36 -9.60 -43.61 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.62 Total: 0.22 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.69 Total: -4.25 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -1.82 Total: -54.43 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.07 Total: -7.44 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.65 Total: 17.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.01 -9.60 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640139508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.118 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds