Wall clock time and date at job start Tue Mar 31 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34876 * 125.65492 * 2 1 4 4 C 1.35632 * 109.06841 * 180.02562 * 3 2 1 5 5 C 1.39596 * 107.90315 * 0.02562 * 4 3 2 6 6 C 1.37873 * 125.64356 * 179.70468 * 2 1 3 7 7 C 1.41359 * 126.30512 * 359.97438 * 6 2 1 8 8 O 1.21438 * 119.99561 * 0.02562 * 7 6 2 9 9 C 1.50701 * 119.99874 * 180.02562 * 7 6 2 10 10 N 1.46897 * 109.46776 * 179.97438 * 9 7 6 11 11 C 1.46957 * 111.00579 * 293.80248 * 10 9 7 12 12 C 1.53042 * 109.36757 * 176.80982 * 11 10 9 13 13 N 1.46960 * 109.36352 * 58.40317 * 12 11 10 14 14 C 1.46899 * 110.99924 * 176.81245 * 13 12 11 15 15 C 1.50694 * 109.47444 * 58.98825 * 14 13 12 16 16 H 1.07998 * 119.99973 * 4.99547 * 15 14 13 17 17 C 1.37876 * 120.00070 * 184.98710 * 15 14 13 18 18 N 1.31514 * 119.99893 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00083 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47093 * 90.00012 * 19 17 15 21 21 H 1.48503 * 109.46811 * 210.00121 * 19 17 15 22 22 H 1.48498 * 109.47047 * 329.99800 * 19 17 15 23 23 C 1.46950 * 110.87779 * 300.67783 * 13 12 11 24 24 C 1.46960 * 110.99899 * 170.00296 * 10 9 7 25 25 H 1.09002 * 109.47277 * 90.01758 * 1 2 3 26 26 H 1.09005 * 109.46300 * 330.02175 * 1 2 3 27 27 H 1.08993 * 109.47472 * 210.02472 * 1 2 3 28 28 H 1.08004 * 125.46119 * 359.97438 * 3 2 1 29 29 H 1.08000 * 126.05259 * 180.02562 * 4 3 2 30 30 H 1.07995 * 126.53446 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.47012 * 300.00069 * 9 7 6 32 32 H 1.09003 * 109.46641 * 60.00719 * 9 7 6 33 33 H 1.09002 * 109.48571 * 296.78271 * 11 10 9 34 34 H 1.09000 * 109.48938 * 56.84216 * 11 10 9 35 35 H 1.09000 * 109.49464 * 298.43534 * 12 11 10 36 36 H 1.09001 * 109.49053 * 178.36921 * 12 11 10 37 37 H 1.09004 * 109.47123 * 178.99480 * 14 13 12 38 38 H 1.09002 * 109.47173 * 298.98877 * 14 13 12 39 39 H 0.97003 * 119.99697 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.49264 * 299.35232 * 23 13 12 41 41 H 1.09009 * 109.48832 * 179.28977 * 23 13 12 42 42 H 1.09008 * 109.48691 * 303.15587 * 24 10 9 43 43 H 1.08987 * 109.48881 * 63.22241 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0959 0.0000 4 6 3.5511 0.7087 -0.0006 5 6 3.5831 -0.6868 -0.0015 6 6 2.2684 -1.1204 0.0058 7 6 1.8304 -2.4644 0.0132 8 8 0.6423 -2.7157 0.0145 9 6 2.8378 -3.5852 0.0195 10 7 2.1350 -4.8751 0.0272 11 6 1.3971 -5.0655 1.2838 12 6 0.6169 -6.3805 1.2200 13 7 1.5514 -7.4908 0.9880 14 6 0.8486 -8.7807 0.9957 15 6 -0.2107 -8.7821 -0.0762 16 1 -0.2950 -7.9448 -0.7531 17 6 -1.0720 -9.8524 -0.1929 18 7 -1.9960 -9.8538 -1.1287 19 14 -0.9264 -11.3005 0.9781 20 1 -1.7806 -11.0617 2.1692 21 1 -1.3706 -12.5395 0.2906 22 1 0.4878 -11.4513 1.4054 23 6 2.2892 -7.3005 -0.2685 24 6 3.0695 -5.9854 -0.2047 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3632 0.8903 0.5135 27 1 -0.3634 -0.8897 0.5142 28 1 1.9016 2.1178 -0.0004 29 1 4.4095 1.3641 -0.0003 30 1 4.4654 -1.3096 -0.0018 31 1 3.4629 -3.5169 -0.8708 32 1 3.4627 -3.5070 0.9092 33 1 2.0997 -5.0994 2.1165 34 1 0.7030 -4.2374 1.4269 35 1 -0.1047 -6.3361 0.4042 36 1 0.0918 -6.5379 2.1621 37 1 1.5606 -9.5835 0.8040 38 1 0.3813 -8.9341 1.9684 39 1 -2.6022 -10.6066 -1.2105 40 1 1.5867 -7.2665 -1.1012 41 1 2.9834 -8.1287 -0.4116 42 1 3.5946 -5.8280 -1.1469 43 1 3.7910 -6.0298 0.6110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000640139508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:07 Heat of formation + Delta-G solvation = 16.443579 kcal Electronic energy + Delta-G solvation = -23397.880638 eV Core-core repulsion = 20057.730475 eV Total energy + Delta-G solvation = -3340.150162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.45203 -40.57624 -39.29566 -36.55725 -34.48869 -33.89703 -31.83057 -31.74616 -30.33680 -28.11418 -27.43872 -25.78915 -24.46413 -23.47604 -22.83275 -21.32089 -20.67776 -19.87578 -18.89358 -18.21589 -17.17015 -16.79817 -16.50336 -16.26935 -16.02491 -15.84444 -15.78011 -15.42376 -14.99645 -14.80240 -14.42655 -14.20364 -14.15918 -13.87359 -13.62748 -13.27506 -13.17819 -13.05598 -12.93432 -12.85816 -12.65682 -12.29409 -12.13268 -12.07526 -11.75621 -11.73973 -11.47966 -10.80295 -10.58471 -9.69913 -9.30204 -9.16872 -9.01819 -8.32241 -6.38194 0.14562 1.34592 1.36068 1.48866 1.75774 1.87150 2.26195 2.33113 2.80411 3.02328 3.30158 3.36363 3.94899 3.99941 4.16900 4.20759 4.23353 4.31243 4.37203 4.41005 4.46810 4.50034 4.57464 4.58202 4.60199 4.68458 4.70977 4.88488 4.94545 5.03214 5.10724 5.14821 5.19600 5.22422 5.29551 5.49690 5.81821 5.99108 6.01747 6.05943 6.17349 6.31035 6.33095 6.38203 6.69243 6.74990 7.28333 8.84722 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032250 B = 0.003239 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.001076 B = 8643.575501 C = 9132.428894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.421 5.421 3 C 0.032 3.968 4 C -0.226 4.226 5 C -0.107 4.107 6 C -0.132 4.132 7 C 0.413 3.587 8 O -0.498 6.498 9 C 0.026 3.974 10 N -0.552 5.552 11 C 0.073 3.927 12 C 0.070 3.930 13 N -0.528 5.528 14 C 0.161 3.839 15 C -0.550 4.550 16 H 0.027 0.973 17 C 0.007 3.993 18 N -0.950 5.950 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.243 1.243 23 C 0.060 3.940 24 C 0.071 3.929 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.201 0.799 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.007 0.993 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.008 0.992 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.610 22.802 4.875 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.093 5.093 3 C -0.106 4.106 4 C -0.250 4.250 5 C -0.133 4.133 6 C -0.241 4.241 7 C 0.297 3.703 8 O -0.378 6.378 9 C -0.102 4.102 10 N -0.277 5.277 11 C -0.055 4.055 12 C -0.059 4.059 13 N -0.252 5.252 14 C 0.033 3.967 15 C -0.589 4.589 16 H 0.046 0.954 17 C -0.191 4.191 18 N -0.591 5.591 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.166 1.166 23 C -0.069 4.069 24 C -0.056 4.056 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.096 0.904 28 H 0.218 0.782 29 H 0.186 0.814 30 H 0.187 0.813 31 H 0.149 0.851 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.025 0.975 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.026 0.974 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.464 22.519 4.807 26.674 hybrid contribution -0.983 -0.875 -0.151 1.324 sum 12.481 21.645 4.656 25.416 Atomic orbital electron populations 1.22351 0.75755 1.05576 1.04190 1.44198 1.07482 1.05809 1.51822 1.22735 0.90999 0.92678 1.04227 1.21294 0.96878 0.95156 1.11630 1.21995 0.94418 0.96316 1.00603 1.19917 0.92265 0.88718 1.23183 1.20601 0.89712 0.88679 0.71345 1.90553 1.20440 1.87210 1.39594 1.22326 0.95265 0.87264 1.05361 1.61793 1.28115 1.02073 1.35760 1.22095 0.97077 0.96430 0.89933 1.21859 0.94017 0.90667 0.99377 1.62690 1.26641 1.02471 1.33350 1.20032 0.92481 0.89103 0.95052 1.21900 1.16242 1.04442 1.16341 0.95441 1.26015 0.94159 1.01707 0.97182 1.70109 1.20475 1.32918 1.35575 0.85588 0.80292 0.77658 0.78619 1.19243 1.20868 1.16578 1.22037 0.96438 0.97714 0.90687 1.22166 0.92933 0.88314 1.02182 0.90516 0.86708 0.90414 0.78194 0.81445 0.81267 0.85120 0.89049 0.93459 0.90635 0.97497 0.91565 0.94734 0.95242 0.92515 0.97367 0.90118 0.88340 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 10.54 127.77 1.35 2.44 16 2 N -0.42 -8.28 3.15 -539.61 -1.70 -9.98 16 3 C 0.03 0.43 11.34 83.62 0.95 1.38 16 4 C -0.23 -3.06 10.81 21.99 0.24 -2.82 16 5 C -0.11 -1.75 10.31 22.65 0.23 -1.52 16 6 C -0.13 -2.96 6.70 39.01 0.26 -2.69 16 7 C 0.41 11.31 6.64 26.45 0.18 11.49 16 8 O -0.50 -17.69 12.50 -3.52 -0.04 -17.74 16 9 C 0.03 0.61 4.70 85.56 0.40 1.01 16 10 N -0.55 -17.94 4.44 -900.30 -4.00 -21.94 16 11 C 0.07 2.57 5.26 86.31 0.45 3.02 16 12 C 0.07 3.06 5.24 86.31 0.45 3.52 16 13 N -0.53 -23.16 4.92 -900.30 -4.43 -27.59 16 14 C 0.16 8.01 4.21 85.56 0.36 8.37 16 15 C -0.55 -33.01 8.21 25.60 0.21 -32.80 16 16 H 0.03 1.88 6.07 -2.91 -0.02 1.86 16 17 C 0.01 0.41 5.47 84.65 0.46 0.88 16 18 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 19 Si 0.96 45.25 27.37 68.60 1.88 47.13 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.24 -10.55 6.69 99.48 0.67 -9.89 16 23 C 0.06 2.40 5.32 86.31 0.46 2.86 16 24 C 0.07 2.14 5.61 86.31 0.48 2.62 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.08 1.83 6.24 -2.39 -0.01 1.81 16 28 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 29 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.17 1.85 7.93 -2.91 -0.02 1.83 16 31 H 0.13 2.36 8.03 -2.39 -0.02 2.34 16 32 H 0.09 1.68 8.12 -2.39 -0.02 1.66 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.79 5.85 -2.39 -0.01 2.77 16 35 H 0.01 0.36 6.62 -2.39 -0.02 0.34 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.03 1.67 7.52 -2.38 -0.02 1.65 16 38 H 0.03 1.44 7.29 -2.39 -0.02 1.42 16 39 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 40 H 0.01 0.39 6.78 -2.39 -0.02 0.38 16 41 H 0.08 2.99 8.12 -2.38 -0.02 2.97 16 42 H 0.10 2.43 8.07 -2.38 -0.02 2.41 16 43 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -79.58 339.36 -0.56 -80.14 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.95 Total: 13.66 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 6.49 Total: -2.25 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -9.83 Total: -120.94 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.04 Total: -17.74 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -79.58 -0.56 -80.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640139508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.584 kcal (2) G-P(sol) polarization free energy of solvation -79.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds