Wall clock time and date at job start Tue Mar 31 2020 07:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.38301 * 119.96242 * 269.72865 * 5 4 2 7 7 C 1.38267 * 120.15308 * 179.72549 * 6 5 4 8 8 C 1.38130 * 120.07002 * 0.54066 * 7 6 5 9 9 C 1.38891 * 119.92310 * 359.73306 * 8 7 6 10 10 N 1.39680 * 120.07013 * 180.02562 * 9 8 7 11 11 C 1.46499 * 120.00272 * 359.97438 * 10 9 8 12 12 C 1.50698 * 109.47174 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99831 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00188 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00282 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47182 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99939 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00234 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47239 * 90.00004 * 20 18 16 22 22 H 1.48496 * 109.47252 * 210.00103 * 20 18 16 23 23 H 1.48498 * 109.47130 * 330.00368 * 20 18 16 24 24 C 1.38086 * 119.96415 * 89.99453 * 5 4 2 25 25 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 26 26 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 27 27 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 28 28 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 29 29 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 31 31 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 32 32 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 33 33 H 1.08001 * 119.92631 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.96685 * 180.27631 * 7 6 5 35 35 H 1.08002 * 120.03441 * 179.74623 * 8 7 6 36 36 H 0.97005 * 119.99258 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.46873 * 300.00345 * 11 10 9 38 38 H 1.09004 * 109.46729 * 59.99639 * 11 10 9 39 39 H 0.96998 * 119.99706 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.46670 * 299.99820 * 15 14 12 41 41 H 1.08998 * 109.47040 * 59.99687 * 15 14 12 42 42 H 0.96998 * 120.00487 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.03432 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 3.9690 -2.0612 0.3049 7 6 5.3318 -2.2333 0.1466 8 6 6.2117 -1.3034 0.6651 9 6 5.7260 -0.1916 1.3412 10 7 6.6130 0.7510 1.8663 11 6 8.0574 0.5673 1.7046 12 6 8.7857 1.7146 2.3559 13 8 8.1598 2.5990 2.9011 14 7 10.1326 1.7581 2.3327 15 6 10.8406 2.8732 2.9663 16 6 12.3264 2.6843 2.7999 17 1 12.7054 1.8202 2.2743 18 6 13.2019 3.6150 3.3177 19 7 12.7404 4.6674 3.9573 20 14 15.0436 3.3806 3.1120 21 1 15.4878 4.0301 1.8526 22 1 15.7525 3.9956 4.2628 23 1 15.3548 1.9296 3.0570 24 6 4.3559 -0.0189 1.4936 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 -1.0253 -0.0709 28 1 1.6459 1.8948 0.8900 29 1 3.0850 1.3425 -0.0005 30 1 1.6459 1.8949 -0.8899 31 1 1.7976 -0.2247 2.0628 32 1 1.5091 -1.7406 1.1755 33 1 3.2834 -2.7923 -0.0974 34 1 5.7088 -3.0980 -0.3793 35 1 7.2762 -1.4405 0.5446 36 1 6.2725 1.5272 2.3380 37 1 8.3594 -0.3688 2.1743 38 1 8.3032 0.5370 0.6431 39 1 10.6331 1.0510 1.8964 40 1 10.5388 3.8092 2.4963 41 1 10.5944 2.9037 4.0277 42 1 13.3563 5.3220 4.3219 43 1 3.9749 0.8447 2.0184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689481090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:49 Heat of formation + Delta-G solvation = -9.100597 kcal Electronic energy + Delta-G solvation = -21998.153893 eV Core-core repulsion = 18656.896052 eV Total energy + Delta-G solvation = -3341.257841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86684 -38.96920 -37.39204 -35.16769 -34.26596 -32.44712 -31.57390 -30.28118 -27.96051 -27.65204 -26.87230 -25.87556 -22.89048 -22.42569 -22.21237 -20.42705 -19.79438 -17.89236 -16.75061 -16.27584 -15.81593 -15.69311 -15.49602 -15.41681 -15.31987 -14.89264 -14.68879 -14.21078 -13.70687 -13.52797 -13.48017 -12.93093 -12.64462 -12.56469 -12.47028 -12.20756 -12.02811 -11.90983 -11.83305 -11.68241 -11.33627 -11.04558 -10.93899 -10.87871 -10.38593 -10.06130 -9.48162 -9.29853 -8.89330 -8.82022 -8.54341 -8.03919 -7.35940 -6.22904 -4.30501 1.37120 1.66014 3.13957 3.20634 3.25754 3.28373 3.33040 3.63567 4.05141 4.09357 4.31359 4.62641 4.79652 4.93022 5.05818 5.08772 5.13420 5.18357 5.23478 5.27441 5.36791 5.38725 5.41999 5.44368 5.48453 5.55019 5.58230 5.78813 5.81384 6.00544 6.31877 6.51285 6.64817 6.71863 6.76096 6.87402 7.17240 7.25714 7.37229 7.41436 7.57640 7.82123 7.89193 8.46557 8.66201 8.91557 9.36113 10.87222 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035438 B = 0.002331 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.915605 B =12011.539716 C =12594.309215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.018 3.982 4 C 0.093 3.907 5 C -0.034 4.034 6 C -0.164 4.164 7 C -0.072 4.072 8 C -0.201 4.201 9 C 0.224 3.776 10 N -0.732 5.732 11 C 0.104 3.896 12 C 0.493 3.507 13 O -0.554 6.554 14 N -0.706 5.706 15 C 0.249 3.751 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.191 4.191 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.411 0.589 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.393 0.607 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.267 0.733 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.731 -13.236 -8.000 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.131 4.131 4 C -0.034 4.034 5 C -0.035 4.035 6 C -0.185 4.185 7 C -0.091 4.091 8 C -0.224 4.224 9 C 0.120 3.880 10 N -0.364 5.364 11 C -0.025 4.025 12 C 0.277 3.723 13 O -0.433 6.433 14 N -0.354 5.354 15 C 0.129 3.871 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.214 4.214 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.249 0.751 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.226 0.774 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.724 -12.645 -7.938 24.738 hybrid contribution 0.977 0.392 0.643 1.234 sum -18.747 -12.253 -7.295 23.554 Atomic orbital electron populations 1.22396 0.87305 1.02198 1.00524 1.61983 1.07471 1.14285 1.42681 1.22512 1.01980 0.88198 1.00363 1.21073 0.91924 0.98712 0.91703 1.19318 0.93782 0.94061 0.96311 1.20660 0.95089 0.99042 1.03664 1.20846 0.93068 0.97809 0.97339 1.20676 0.99879 0.96160 1.05724 1.17765 0.89253 0.89034 0.91954 1.44448 1.03173 1.26473 1.62283 1.21100 0.81957 0.98126 1.01283 1.20353 0.83724 0.87127 0.81102 1.90653 1.66922 1.39677 1.46077 1.46418 1.05048 1.27692 1.56236 1.19157 0.90673 0.83874 0.93401 1.21206 0.90339 1.08947 1.37896 0.91774 1.24961 0.99659 0.94796 0.94626 1.69966 1.35392 1.11140 1.35706 0.86386 0.84062 0.78443 0.77857 1.20410 1.20972 1.19702 1.20413 0.91084 1.01792 1.08104 0.91302 0.95713 0.91359 0.95696 0.90323 0.91520 0.94017 0.89958 0.86687 0.86332 0.86186 0.75106 0.89675 0.89668 0.77380 0.95383 0.95375 0.92364 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.07 0.57 0.75 16 2 N -0.54 -5.07 5.01 -252.72 -1.27 -6.34 16 3 C 0.02 0.16 9.25 60.06 0.56 0.72 16 4 C 0.09 0.86 5.12 -4.98 -0.03 0.83 16 5 C -0.03 -0.37 4.89 -104.65 -0.51 -0.88 16 6 C -0.16 -1.73 9.69 -39.55 -0.38 -2.11 16 7 C -0.07 -0.75 10.04 -39.61 -0.40 -1.15 16 8 C -0.20 -2.34 9.31 -39.38 -0.37 -2.71 16 9 C 0.22 2.88 6.65 -83.79 -0.56 2.32 16 10 N -0.73 -10.22 5.70 -59.81 -0.34 -10.56 16 11 C 0.10 1.42 5.39 -5.20 -0.03 1.39 16 12 C 0.49 9.27 7.90 -10.99 -0.09 9.18 16 13 O -0.55 -12.60 15.67 5.55 0.09 -12.52 16 14 N -0.71 -14.09 5.55 -61.47 -0.34 -14.43 16 15 C 0.25 6.43 5.43 -5.19 -0.03 6.40 16 16 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 17 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.88 -25.70 13.29 55.43 0.74 -24.97 16 20 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 C -0.19 -2.28 7.75 -39.38 -0.31 -2.58 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.84 5.89 -51.93 -0.31 0.53 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.38 8.06 -51.92 -0.42 -0.04 16 32 H 0.08 0.66 8.00 -51.93 -0.42 0.24 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.24 6.73 -52.49 -0.35 0.89 16 36 H 0.41 6.21 7.45 -40.82 -0.30 5.91 16 37 H 0.09 1.01 7.95 -51.93 -0.41 0.59 16 38 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 39 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.12 1.32 7.98 -52.49 -0.42 0.90 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -31.29 359.13 -9.43 -40.72 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.72 Total: 8.18 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.98 Total: -0.99 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -1.21 Total: -56.30 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.29 -9.43 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689481090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.620 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds