Wall clock time and date at job start Tue Mar 31 2020 07:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.38301 * 119.96242 * 269.72865 * 5 4 2 7 7 C 1.38267 * 120.15308 * 179.72549 * 6 5 4 8 8 C 1.38130 * 120.07002 * 0.54066 * 7 6 5 9 9 C 1.38891 * 119.92310 * 359.73306 * 8 7 6 10 10 N 1.39680 * 120.07013 * 180.02562 * 9 8 7 11 11 C 1.46499 * 120.00272 * 359.97438 * 10 9 8 12 12 C 1.50698 * 109.47174 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99831 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00188 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00282 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47182 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99939 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99887 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00234 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47239 * 90.00004 * 20 18 16 22 22 H 1.48496 * 109.47252 * 210.00103 * 20 18 16 23 23 H 1.48498 * 109.47130 * 330.00368 * 20 18 16 24 24 C 1.38086 * 119.96415 * 89.99453 * 5 4 2 25 25 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 26 26 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 27 27 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 28 28 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 29 29 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 31 31 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 32 32 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 33 33 H 1.08001 * 119.92631 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.96685 * 180.27631 * 7 6 5 35 35 H 1.08002 * 120.03441 * 179.74623 * 8 7 6 36 36 H 0.97005 * 119.99258 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.46873 * 300.00345 * 11 10 9 38 38 H 1.09004 * 109.46729 * 59.99639 * 11 10 9 39 39 H 0.96998 * 119.99706 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.46670 * 299.99820 * 15 14 12 41 41 H 1.08998 * 109.47040 * 59.99687 * 15 14 12 42 42 H 0.96998 * 120.00487 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.03432 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 3.9690 -2.0612 0.3049 7 6 5.3318 -2.2333 0.1466 8 6 6.2117 -1.3034 0.6651 9 6 5.7260 -0.1916 1.3412 10 7 6.6130 0.7510 1.8663 11 6 8.0574 0.5673 1.7046 12 6 8.7857 1.7146 2.3559 13 8 8.1598 2.5990 2.9011 14 7 10.1326 1.7581 2.3327 15 6 10.8406 2.8732 2.9663 16 6 12.3264 2.6843 2.7999 17 1 12.7054 1.8202 2.2743 18 6 13.2019 3.6150 3.3177 19 7 12.7404 4.6674 3.9573 20 14 15.0436 3.3806 3.1120 21 1 15.4878 4.0301 1.8526 22 1 15.7525 3.9956 4.2628 23 1 15.3548 1.9296 3.0570 24 6 4.3559 -0.0189 1.4936 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 -1.0253 -0.0709 28 1 1.6459 1.8948 0.8900 29 1 3.0850 1.3425 -0.0005 30 1 1.6459 1.8949 -0.8899 31 1 1.7976 -0.2247 2.0628 32 1 1.5091 -1.7406 1.1755 33 1 3.2834 -2.7923 -0.0974 34 1 5.7088 -3.0980 -0.3793 35 1 7.2762 -1.4405 0.5446 36 1 6.2725 1.5272 2.3380 37 1 8.3594 -0.3688 2.1743 38 1 8.3032 0.5370 0.6431 39 1 10.6331 1.0510 1.8964 40 1 10.5388 3.8092 2.4963 41 1 10.5944 2.9037 4.0277 42 1 13.3563 5.3220 4.3219 43 1 3.9749 0.8447 2.0184 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689481090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:48 Heat of formation + Delta-G solvation = -31.854294 kcal Electronic energy + Delta-G solvation = -21999.140567 eV Core-core repulsion = 18656.896052 eV Total energy + Delta-G solvation = -3342.244515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96749 -40.28447 -38.18641 -36.41242 -35.89556 -34.41415 -32.36476 -31.38816 -29.54241 -28.46447 -27.61780 -27.23200 -24.57373 -23.43353 -23.04617 -21.68953 -21.02228 -19.32316 -18.17905 -17.53699 -17.06519 -16.82490 -16.74602 -16.49922 -16.36945 -16.16331 -15.56790 -15.52995 -14.93119 -14.68280 -14.55528 -14.25984 -13.97385 -13.90976 -13.55685 -13.22607 -13.17341 -12.95674 -12.87698 -12.72492 -12.63170 -12.46653 -12.24622 -12.12075 -11.68131 -11.51130 -10.99076 -10.95304 -10.82709 -9.91995 -9.70057 -9.26681 -8.31314 -8.31000 -6.47635 0.53378 0.79146 1.43267 1.45289 1.56545 1.60655 2.07644 2.38186 2.74446 2.87104 3.04313 3.33008 3.80281 3.86959 4.03450 4.24448 4.26921 4.33273 4.39106 4.45197 4.46690 4.59369 4.61169 4.70236 4.70915 4.80913 4.96712 5.03351 5.04240 5.07395 5.17827 5.20408 5.42232 5.45455 5.61877 5.68806 5.81444 5.83967 5.96810 6.03567 6.12942 6.40686 6.62497 6.70913 6.83048 7.20314 7.37550 8.81068 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035438 B = 0.002331 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.915605 B =12011.539716 C =12594.309215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.020 3.980 4 C 0.095 3.905 5 C -0.039 4.039 6 C -0.166 4.166 7 C -0.073 4.073 8 C -0.208 4.208 9 C 0.206 3.794 10 N -0.744 5.744 11 C 0.121 3.879 12 C 0.492 3.508 13 O -0.598 6.598 14 N -0.700 5.700 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.087 0.913 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.985 3.015 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.254 1.254 24 C -0.201 4.201 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.401 0.599 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.413 0.587 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.269 0.731 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.452 -15.967 -9.614 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.128 4.128 4 C -0.033 4.033 5 C -0.040 4.040 6 C -0.187 4.187 7 C -0.092 4.092 8 C -0.231 4.231 9 C 0.103 3.897 10 N -0.376 5.376 11 C -0.007 4.007 12 C 0.278 3.722 13 O -0.480 6.480 14 N -0.350 5.350 15 C 0.143 3.857 16 C -0.594 4.594 17 H 0.105 0.895 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.178 1.178 24 C -0.224 4.224 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.237 0.763 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.249 0.751 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.077 0.923 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.469 -15.447 -9.594 26.640 hybrid contribution 0.747 1.224 1.130 1.825 sum -18.722 -14.223 -8.464 24.989 Atomic orbital electron populations 1.22454 0.85880 1.03162 1.00923 1.62000 1.08822 1.13987 1.42711 1.22457 1.00951 0.88682 1.00734 1.21089 0.91092 0.99466 0.91609 1.19543 0.94561 0.93931 0.95980 1.20964 0.95696 0.99014 1.02987 1.21177 0.92927 0.98231 0.96833 1.20922 1.00950 0.95815 1.05438 1.17952 0.89327 0.89479 0.92963 1.44469 1.03298 1.26727 1.63096 1.21063 0.81298 0.96082 1.02225 1.21276 0.83098 0.87811 0.79978 1.90635 1.67718 1.41831 1.47833 1.46101 1.05731 1.26859 1.56321 1.18575 0.91574 0.84402 0.91150 1.21626 0.90444 1.09613 1.37705 0.89530 1.26077 1.05357 0.94277 0.94015 1.70130 1.37433 1.12375 1.37019 0.85146 0.77039 0.79253 0.77729 1.19636 1.21116 1.17788 1.20502 0.91270 1.02111 1.08544 0.90699 0.95478 0.90160 0.95665 0.91983 0.90825 0.94315 0.88424 0.84939 0.83773 0.84763 0.76252 0.86944 0.87008 0.75106 0.99325 0.99296 0.92256 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.57 127.69 1.22 1.52 16 2 N -0.55 -9.64 5.01 -953.46 -4.78 -14.42 16 3 C 0.02 0.37 9.25 127.69 1.18 1.55 16 4 C 0.09 1.62 5.12 85.56 0.44 2.06 16 5 C -0.04 -0.80 4.89 -19.88 -0.10 -0.90 16 6 C -0.17 -3.11 9.69 22.29 0.22 -2.90 16 7 C -0.07 -1.33 10.04 22.25 0.22 -1.11 16 8 C -0.21 -4.38 9.31 22.40 0.21 -4.17 16 9 C 0.21 5.10 6.65 38.21 0.25 5.35 16 10 N -0.74 -20.53 5.70 -343.13 -1.96 -22.49 16 11 C 0.12 3.11 5.39 85.63 0.46 3.57 16 12 C 0.49 18.61 7.90 87.66 0.69 19.30 16 13 O -0.60 -28.39 15.67 -3.04 -0.05 -28.44 16 14 N -0.70 -28.03 5.55 -466.79 -2.59 -30.62 16 15 C 0.27 14.23 5.43 85.63 0.46 14.70 16 16 C -0.56 -29.53 9.28 25.60 0.24 -29.30 16 17 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 20 Si 0.99 41.64 29.54 68.60 2.03 43.67 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 24 C -0.20 -4.77 7.75 22.40 0.17 -4.60 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 28 H 0.02 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.06 1.34 5.89 -2.39 -0.01 1.33 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.68 8.06 -2.38 -0.02 0.66 16 32 H 0.10 1.35 8.00 -2.39 -0.02 1.33 16 33 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.13 2.34 6.73 -2.91 -0.02 2.32 16 36 H 0.40 12.58 7.45 -92.70 -0.69 11.88 16 37 H 0.11 2.33 7.95 -2.39 -0.02 2.31 16 38 H 0.11 2.33 7.95 -2.39 -0.02 2.31 16 39 H 0.41 13.16 8.32 -92.71 -0.77 12.39 16 40 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 41 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.11 2.63 7.98 -2.91 -0.02 2.61 16 Total: -1.00 -70.10 359.13 -1.37 -71.48 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.45 Total: 30.47 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 6.14 Total: 5.67 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -9.04 Total: -122.85 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -70.10 -1.37 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689481090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.622 kcal (2) G-P(sol) polarization free energy of solvation -70.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds